data_71L
#
_chem_comp.id 71L
_chem_comp.name 4,6-dimethylpyridin-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H10 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-08-10
_chem_comp.pdbx_modified_date 2017-02-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 122.168
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 71L
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5SX9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
71L C4 C1 C 0 1 Y N N N N N 57.941 45.850 73.259 -0.587 -1.205 0.002 C4 71L 1
71L C6 C2 C 0 1 Y N N N N N 57.642 43.898 71.934 -0.786 1.095 0.001 C6 71L 2
71L C7 C3 C 0 1 Y N N N N N 57.578 43.114 73.094 0.586 1.252 0.004 C7 71L 3
71L C8 C4 C 0 1 N N N N N N 57.507 43.268 70.569 -1.674 2.312 -0.002 C8 71L 4
71L C3 C5 C 0 1 Y N N N N N 57.883 45.104 74.441 0.801 -1.121 -0.001 C3 71L 5
71L C2 C6 C 0 1 Y N N N N N 57.700 43.722 74.355 1.400 0.127 0.001 C2 71L 6
71L C1 C7 C 0 1 N N N N N N 57.632 42.902 75.616 2.901 0.261 -0.002 C1 71L 7
71L N5 N1 N 0 1 Y N N N N N 57.823 45.242 72.044 -1.329 -0.108 -0.001 N5 71L 8
71L N9 N2 N 0 1 N N N N N N 58.140 47.317 73.333 -1.202 -2.452 -0.000 N9 71L 9
71L H1 H1 H 0 1 N N N N N N 57.435 42.046 73.019 1.022 2.240 0.005 H1 71L 10
71L H2 H2 H 0 1 N N N N N N 57.580 44.047 69.796 -1.891 2.606 1.025 H2 71L 11
71L H3 H3 H 0 1 N N N N N N 58.311 42.532 70.424 -1.167 3.130 -0.515 H3 71L 12
71L H4 H4 H 0 1 N N N N N N 56.531 42.766 70.492 -2.605 2.081 -0.518 H4 71L 13
71L H5 H5 H 0 1 N N N N N N 57.978 45.588 75.402 1.404 -2.017 -0.003 H5 71L 14
71L H6 H6 H 0 1 N N N N N N 58.643 42.567 75.891 3.264 0.292 1.025 H6 71L 15
71L H7 H7 H 0 1 N N N N N N 57.215 43.514 76.429 3.341 -0.592 -0.518 H7 71L 16
71L H8 H8 H 0 1 N N N N N N 56.988 42.026 75.449 3.182 1.181 -0.515 H8 71L 17
71L H9 H9 H 0 1 N N N N N N 58.163 47.698 72.409 -0.663 -3.258 -0.003 H9 71L 18
71L H10 H10 H 0 1 N N N N N N 57.387 47.730 73.845 -2.170 -2.515 0.001 H10 71L 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
71L C8 C6 SING N N 1
71L C6 N5 DOUB Y N 2
71L C6 C7 SING Y N 3
71L N5 C4 SING Y N 4
71L C7 C2 DOUB Y N 5
71L C4 N9 SING N N 6
71L C4 C3 DOUB Y N 7
71L C2 C3 SING Y N 8
71L C2 C1 SING N N 9
71L C7 H1 SING N N 10
71L C8 H2 SING N N 11
71L C8 H3 SING N N 12
71L C8 H4 SING N N 13
71L C3 H5 SING N N 14
71L C1 H6 SING N N 15
71L C1 H7 SING N N 16
71L C1 H8 SING N N 17
71L N9 H9 SING N N 18
71L N9 H10 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
71L SMILES ACDLabs 12.01 c1(N)cc(cc(n1)C)C
71L InChI InChI 1.03 InChI=1S/C7H10N2/c1-5-3-6(2)9-7(8)4-5/h3-4H,1-2H3,(H2,8,9)
71L InChIKey InChI 1.03 BRBUBVKGJRPRRD-UHFFFAOYSA-N
71L SMILES_CANONICAL CACTVS 3.385 Cc1cc(C)nc(N)c1
71L SMILES CACTVS 3.385 Cc1cc(C)nc(N)c1
71L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 Cc1cc(nc(c1)N)C
71L SMILES "OpenEye OEToolkits" 2.0.5 Cc1cc(nc(c1)N)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
71L "SYSTEMATIC NAME" ACDLabs 12.01 4,6-dimethylpyridin-2-amine
71L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 4,6-dimethylpyridin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
71L 'Create component' 2016-08-10 RCSB
71L 'Initial release' 2017-02-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
71L C4 C 6.404 1.215 1
71L C6 C 7.702 -1.035 2
71L C7 C 6.404 -1.785 3
71L C8 C 9.002 -1.785 4
71L C3 C 5.104 0.465 5
71L C2 C 5.104 -1.035 6
71L C1 C 3.805 -1.785 7
71L N5 N 7.702 0.465 8
71L N9 N 6.404 2.715 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
71L C8 C6 SINGLE NONE 1
71L C6 N5 SINGLE NONE 2
71L C6 C7 DOUBLE NONE 3
71L N5 C4 DOUBLE NONE 4
71L C7 C2 SINGLE NONE 5
71L C4 N9 SINGLE NONE 6
71L C4 C3 SINGLE NONE 7
71L C2 C3 DOUBLE NONE 8
71L C2 C1 SINGLE NONE 9
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
71L MurckoScaffold S1 scaffold c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
71L pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
71L C4 S1 1
71L C6 S1 1
71L C7 S1 1
71L C3 S1 1
71L C2 S1 1
71L N5 S1 1
71L C4 F1 1
71L C3 F1 1
71L C2 F1 1
71L C7 F1 1
71L C6 F1 1
71L N5 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 71L
_pdbe_chem_comp_rdkit_properties.exactmw 122.084
_pdbe_chem_comp_rdkit_properties.amw 122.171
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 68.887
_pdbe_chem_comp_rdkit_properties.tpsa 38.910
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.791
_pdbe_chem_comp_rdkit_properties.CrippenMR 36.767
_pdbe_chem_comp_rdkit_properties.chi0v 4.394
_pdbe_chem_comp_rdkit_properties.chi1v 2.171
_pdbe_chem_comp_rdkit_properties.chi2v 0.698
_pdbe_chem_comp_rdkit_properties.chi3v 0.698
_pdbe_chem_comp_rdkit_properties.chi4v 0.423
_pdbe_chem_comp_rdkit_properties.chi0n 14.394
_pdbe_chem_comp_rdkit_properties.chi1n 7.065
_pdbe_chem_comp_rdkit_properties.chi2n 0.698
_pdbe_chem_comp_rdkit_properties.chi3n 0.698
_pdbe_chem_comp_rdkit_properties.chi4n 0.423
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.050
_pdbe_chem_comp_rdkit_properties.kappa1 1.192
_pdbe_chem_comp_rdkit_properties.kappa2 2.052
_pdbe_chem_comp_rdkit_properties.kappa3 1.420
_pdbe_chem_comp_rdkit_properties.Phi 0.272
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
71L UniChem ZINC ZINC000019118456
71L UniChem eMolecules 534292
71L UniChem fdasrs 7NVZ9DW9Q5
71L UniChem NMRShiftDB 10346
71L UniChem BindingDb 50091805
71L UniChem 'EPA CompTox Dashboard' DTXSID9052189
71L UniChem ChemicalBook CB3760123
71L UniChem 'Probes And Drugs' PD119381
71L UniChem Nikkaji J51.282F
71L UniChem SureChEMBL SCHEMBL94111
71L UniChem 'PubChem TPHARMA' 16201632
71L UniChem PubChem 21507
71L UniChem Mcule MCULE-5790822228
71L UniChem ACTor 5407-87-4
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
71L C4 -0.664 1.454 -0.304 ETKDGv3 1
71L C6 1.367 0.186 -0.168 ETKDGv3 2
71L C7 0.708 -0.939 0.152 ETKDGv3 3
71L C8 2.859 0.189 -0.275 ETKDGv3 4
71L C3 -1.425 0.236 0.050 ETKDGv3 5
71L C2 -0.770 -0.918 0.253 ETKDGv3 6
71L C1 -1.515 -2.157 0.650 ETKDGv3 7
71L N5 0.634 1.403 -0.398 ETKDGv3 8
71L N9 -1.346 2.685 -0.538 ETKDGv3 9
71L H1 1.250 -1.860 0.336 ETKDGv3 10
71L H2 3.221 1.193 -0.582 ETKDGv3 11
71L H3 3.186 -0.554 -1.033 ETKDGv3 12
71L H4 3.308 -0.066 0.708 ETKDGv3 13
71L H5 -2.503 0.283 0.143 ETKDGv3 14
71L H6 -2.471 -2.233 0.090 ETKDGv3 15
71L H7 -0.913 -3.063 0.429 ETKDGv3 16
71L H8 -1.731 -2.126 1.739 ETKDGv3 17
71L H9 -0.811 3.547 -0.787 ETKDGv3 18
71L H10 -2.386 2.740 -0.465 ETKDGv3 19
#