data_6BW
#
_chem_comp.id 6BW
_chem_comp.name (2R,5S,10R)-6,10-dimethyl-2-(prop-1-en-2-yl)spiro[4.5]dec-6-ene
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H24"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-03-04
_chem_comp.pdbx_modified_date 2016-09-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 204.351
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6BW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5IKH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6BW C01 C1 C 0 1 N N N N N N -9.815 44.217 -10.686 3.496 -0.626 0.322 C01 6BW 1
6BW C02 C2 C 0 1 N N N N N N -9.630 42.728 -10.490 2.375 -1.613 0.182 C02 6BW 2
6BW C03 C3 C 0 1 N N N N N N -10.182 41.863 -11.366 1.129 -1.282 0.058 C03 6BW 3
6BW C04 C4 C 0 1 N N S N N N -10.980 42.365 -12.557 0.641 0.135 0.029 C04 6BW 4
6BW C05 C5 C 0 1 N N N N N N -12.223 41.678 -13.102 -0.643 0.269 0.863 C05 6BW 5
6BW C06 C6 C 0 1 N N R N N N -12.018 41.504 -14.623 -1.746 0.748 -0.104 C06 6BW 6
6BW C07 C7 C 0 1 N N N N N N -12.850 40.408 -15.328 -3.061 0.091 0.230 C07 6BW 7
6BW C08 C8 C 0 1 N N N N N N -12.582 39.106 -15.108 -4.095 0.826 0.560 C08 6BW 8
6BW C09 C9 C 0 1 N N N N N N -13.750 40.802 -16.475 -3.186 -1.410 0.186 C09 6BW 9
6BW C10 C10 C 0 1 N N N N N N -9.907 42.218 -13.620 0.278 0.534 -1.414 C10 6BW 10
6BW C11 C11 C 0 1 N N N N N N -10.487 41.346 -14.713 -1.250 0.296 -1.500 C11 6BW 11
6BW C12 C12 C 0 1 N N R N N N -11.683 43.695 -12.304 1.710 1.086 0.568 C12 6BW 12
6BW C13 C13 C 0 1 N N N N N N -11.319 44.713 -13.368 1.310 2.532 0.269 C13 6BW 13
6BW C14 C14 C 0 1 N N N N N N -11.307 44.273 -10.956 3.039 0.763 -0.126 C14 6BW 14
6BW C15 C15 C 0 1 N N N N N N -9.998 40.376 -11.159 0.110 -2.385 -0.063 C15 6BW 15
6BW H1 H1 H 0 1 N N N N N N -9.233 44.590 -11.541 3.811 -0.583 1.365 H1 6BW 16
6BW H2 H2 H 0 1 N N N N N N -9.544 44.783 -9.783 4.337 -0.944 -0.295 H2 6BW 17
6BW H3 H3 H 0 1 N N N N N N -9.058 42.359 -9.652 2.622 -2.665 0.183 H3 6BW 18
6BW H4 H4 H 0 1 N N N N N N -13.111 42.298 -12.910 -0.913 -0.696 1.291 H4 6BW 19
6BW H5 H5 H 0 1 N N N N N N -12.351 40.696 -12.624 -0.497 1.002 1.657 H5 6BW 20
6BW H6 H6 H 0 1 N N N N N N -12.275 42.463 -15.097 -1.842 1.833 -0.066 H6 6BW 21
6BW H7 H7 H 0 1 N N N N N N -11.784 38.825 -14.437 -5.037 0.355 0.799 H7 6BW 22
6BW H8 H8 H 0 1 N N N N N N -13.166 38.344 -15.602 -4.005 1.901 0.592 H8 6BW 23
6BW H9 H9 H 0 1 N N N N N N -13.854 41.897 -16.500 -3.494 -1.719 -0.813 H9 6BW 24
6BW H10 H10 H 0 1 N N N N N N -13.311 40.454 -17.422 -2.224 -1.862 0.426 H10 6BW 25
6BW H11 H11 H 0 1 N N N N N N -14.740 40.342 -16.339 -3.932 -1.734 0.912 H11 6BW 26
6BW H12 H12 H 0 1 N N N N N N -9.013 41.742 -13.191 0.511 1.584 -1.590 H12 6BW 27
6BW H13 H13 H 0 1 N N N N N N -9.639 43.205 -14.026 0.805 -0.098 -2.129 H13 6BW 28
6BW H14 H14 H 0 1 N N N N N N -10.202 40.295 -14.554 -1.468 -0.760 -1.664 H14 6BW 29
6BW H15 H15 H 0 1 N N N N N N -10.127 41.679 -15.698 -1.694 0.909 -2.284 H15 6BW 30
6BW H16 H16 H 0 1 N N N N N N -12.770 43.529 -12.329 1.814 0.949 1.644 H16 6BW 31
6BW H17 H17 H 0 1 N N N N N N -11.838 45.661 -13.162 0.290 2.706 0.611 H17 6BW 32
6BW H18 H18 H 0 1 N N N N N N -10.232 44.881 -13.358 1.987 3.211 0.788 H18 6BW 33
6BW H19 H19 H 0 1 N N N N N N -11.623 44.336 -14.356 1.369 2.711 -0.805 H19 6BW 34
6BW H20 H20 H 0 1 N N N N N N -11.631 45.324 -10.922 3.788 1.504 0.154 H20 6BW 35
6BW H21 H21 H 0 1 N N N N N N -11.827 43.703 -10.172 2.899 0.771 -1.207 H21 6BW 36
6BW H22 H22 H 0 1 N N N N N N -9.398 40.203 -10.253 0.614 -3.351 -0.025 H22 6BW 37
6BW H23 H23 H 0 1 N N N N N N -10.982 39.897 -11.044 -0.601 -2.315 0.760 H23 6BW 38
6BW H24 H24 H 0 1 N N N N N N -9.481 39.946 -12.029 -0.419 -2.288 -1.010 H24 6BW 39
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6BW C09 C07 SING N N 1
6BW C07 C08 DOUB N N 2
6BW C07 C06 SING N N 3
6BW C11 C06 SING N N 4
6BW C11 C10 SING N N 5
6BW C06 C05 SING N N 6
6BW C10 C04 SING N N 7
6BW C13 C12 SING N N 8
6BW C05 C04 SING N N 9
6BW C04 C12 SING N N 10
6BW C04 C03 SING N N 11
6BW C12 C14 SING N N 12
6BW C03 C15 SING N N 13
6BW C03 C02 DOUB N N 14
6BW C14 C01 SING N N 15
6BW C01 C02 SING N N 16
6BW C01 H1 SING N N 17
6BW C01 H2 SING N N 18
6BW C02 H3 SING N N 19
6BW C05 H4 SING N N 20
6BW C05 H5 SING N N 21
6BW C06 H6 SING N N 22
6BW C08 H7 SING N N 23
6BW C08 H8 SING N N 24
6BW C09 H9 SING N N 25
6BW C09 H10 SING N N 26
6BW C09 H11 SING N N 27
6BW C10 H12 SING N N 28
6BW C10 H13 SING N N 29
6BW C11 H14 SING N N 30
6BW C11 H15 SING N N 31
6BW C12 H16 SING N N 32
6BW C13 H17 SING N N 33
6BW C13 H18 SING N N 34
6BW C13 H19 SING N N 35
6BW C14 H20 SING N N 36
6BW C14 H21 SING N N 37
6BW C15 H22 SING N N 38
6BW C15 H23 SING N N 39
6BW C15 H24 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6BW SMILES ACDLabs 12.01 C1C=C(C)C2(C(C1)C)CC(\C(=C)C)CC2
6BW InChI InChI 1.03 InChI=1S/C15H24/c1-11(2)14-8-9-15(10-14)12(3)6-5-7-13(15)4/h6,13-14H,1,5,7-10H2,2-4H3/t13-,14-,15-/m1/s1
6BW InChIKey InChI 1.03 WEZDOYDDKIHCLM-RBSFLKMASA-N
6BW SMILES_CANONICAL CACTVS 3.385 C[C@@H]1CCC=C(C)[C@]12CC[C@H](C2)C(C)=C
6BW SMILES CACTVS 3.385 C[CH]1CCC=C(C)[C]12CC[CH](C2)C(C)=C
6BW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 C[C@@H]1CCC=C([C@]12CC[C@H](C2)C(=C)C)C
6BW SMILES "OpenEye OEToolkits" 2.0.4 CC1CCC=C(C12CCC(C2)C(=C)C)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6BW "SYSTEMATIC NAME" ACDLabs 12.01 (2R,5S,10R)-6,10-dimethyl-2-(prop-1-en-2-yl)spiro[4.5]dec-6-ene
6BW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 (3~{R},5~{S},6~{R})-6,10-dimethyl-3-prop-1-en-2-yl-spiro[4.5]dec-9-ene
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6BW 'Create component' 2016-03-04 RCSB
6BW 'Initial release' 2016-10-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6BW C01 C 3.000 -0.263 1
6BW C02 C 3.750 1.036 2
6BW C03 C 5.250 1.036 3
6BW C04 C 6.000 -0.263 4
6BW C05 C 6.882 0.951 5
6BW C06 C 8.308 0.487 6
6BW C07 C 9.522 1.369 7
6BW C08 C 9.365 2.861 8
6BW C09 C 10.892 0.759 9
6BW C10 C 6.882 -1.476 10
6BW C11 C 8.308 -1.013 11
6BW C12 C 5.250 -1.562 12
6BW C13 C 6.000 -2.861 13
6BW C14 C 3.750 -1.562 14
6BW C15 C 6.000 2.335 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6BW C09 C07 SINGLE NONE 1
6BW C07 C08 DOUBLE NONE 2
6BW C06 C07 SINGLE BEGINDASH 3
6BW C11 C06 SINGLE NONE 4
6BW C11 C10 SINGLE NONE 5
6BW C06 C05 SINGLE NONE 6
6BW C04 C10 SINGLE BEGINDASH 7
6BW C12 C13 SINGLE BEGINDASH 8
6BW C05 C04 SINGLE NONE 9
6BW C04 C12 SINGLE NONE 10
6BW C04 C03 SINGLE NONE 11
6BW C12 C14 SINGLE NONE 12
6BW C03 C15 SINGLE NONE 13
6BW C03 C02 DOUBLE NONE 14
6BW C14 C01 SINGLE NONE 15
6BW C01 C02 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6BW MurckoScaffold S1 scaffold C1=CC2(CCC1)CCCC2 InChI=1S/C10H16/c1-2-6-10(7-3-1)8-4-5-9-10/h2,6H,1,3-5,7-9H2 XWMQTBGGOQTTMW-UHFFFAOYSA-N
6BW cyclopentane F1 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6BW C01 S1 1
6BW C02 S1 1
6BW C03 S1 1
6BW C04 S1 1
6BW C05 S1 1
6BW C06 S1 1
6BW C10 S1 1
6BW C11 S1 1
6BW C12 S1 1
6BW C14 S1 1
6BW C04 F1 1
6BW C10 F1 1
6BW C11 F1 1
6BW C06 F1 1
6BW C05 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6BW
_pdbe_chem_comp_rdkit_properties.exactmw 204.188
_pdbe_chem_comp_rdkit_properties.amw 204.357
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 39
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 0
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.733
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 128.177
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.725
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.743
_pdbe_chem_comp_rdkit_properties.chi0v 7.500
_pdbe_chem_comp_rdkit_properties.chi1v 4
_pdbe_chem_comp_rdkit_properties.chi2v 2.062
_pdbe_chem_comp_rdkit_properties.chi3v 2.062
_pdbe_chem_comp_rdkit_properties.chi4v 1.250
_pdbe_chem_comp_rdkit_properties.chi0n 31.500
_pdbe_chem_comp_rdkit_properties.chi1n 16
_pdbe_chem_comp_rdkit_properties.chi2n 2.062
_pdbe_chem_comp_rdkit_properties.chi3n 2.062
_pdbe_chem_comp_rdkit_properties.chi4n 1.250
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.520
_pdbe_chem_comp_rdkit_properties.kappa1 1.688
_pdbe_chem_comp_rdkit_properties.kappa2 3.808
_pdbe_chem_comp_rdkit_properties.kappa3 1.684
_pdbe_chem_comp_rdkit_properties.Phi 0.429
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6BW UniChem PDBe 6BW
6BW UniChem ChEBI 46971
6BW UniChem PubChem 14355861
6BW UniChem NMRShiftDB 70109093
6BW UniChem Nikkaji J1.160.714D
6BW UniChem MetaboLights MTBLC46971
6BW UniChem BRENDA 164873
6BW UniChem Rhea 46971
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6BW C01 -3.183 -1.173 -0.939 ETKDGv3 1
6BW C02 -2.622 -0.031 -1.737 ETKDGv3 2
6BW C03 -1.422 0.508 -1.435 ETKDGv3 3
6BW C04 -0.681 0.003 -0.175 ETKDGv3 4
6BW C05 0.499 0.922 0.263 ETKDGv3 5
6BW C06 1.634 -0.013 0.676 ETKDGv3 6
6BW C07 2.994 0.677 0.661 ETKDGv3 7
6BW C08 3.235 1.651 1.556 ETKDGv3 8
6BW C09 4.073 0.294 -0.324 ETKDGv3 9
6BW C10 -0.015 -1.369 -0.479 ETKDGv3 10
6BW C11 1.485 -1.203 -0.266 ETKDGv3 11
6BW C12 -1.766 -0.095 0.966 ETKDGv3 12
6BW C13 -1.235 -0.502 2.356 ETKDGv3 13
6BW C14 -2.970 -1.002 0.577 ETKDGv3 14
6BW C15 -0.898 1.625 -2.310 ETKDGv3 15
6BW H1 -2.683 -2.107 -1.275 ETKDGv3 16
6BW H2 -4.266 -1.284 -1.158 ETKDGv3 17
6BW H3 -3.202 0.339 -2.578 ETKDGv3 18
6BW H4 0.886 1.549 -0.562 ETKDGv3 19
6BW H5 0.223 1.618 1.084 ETKDGv3 20
6BW H6 1.455 -0.381 1.709 ETKDGv3 21
6BW H7 2.480 1.941 2.280 ETKDGv3 22
6BW H8 4.188 2.171 1.581 ETKDGv3 23
6BW H9 5.029 0.825 -0.123 ETKDGv3 24
6BW H10 3.747 0.552 -1.352 ETKDGv3 25
6BW H11 4.273 -0.796 -0.259 ETKDGv3 26
6BW H12 -0.392 -2.173 0.187 ETKDGv3 27
6BW H13 -0.198 -1.709 -1.523 ETKDGv3 28
6BW H14 1.950 -0.992 -1.253 ETKDGv3 29
6BW H15 1.939 -2.121 0.167 ETKDGv3 30
6BW H16 -2.179 0.933 1.093 ETKDGv3 31
6BW H17 -0.553 0.268 2.768 ETKDGv3 32
6BW H18 -0.711 -1.479 2.326 ETKDGv3 33
6BW H19 -2.081 -0.590 3.071 ETKDGv3 34
6BW H20 -2.848 -2.017 1.017 ETKDGv3 35
6BW H21 -3.894 -0.574 1.024 ETKDGv3 36
6BW H22 0.109 1.361 -2.694 ETKDGv3 37
6BW H23 -1.548 1.807 -3.193 ETKDGv3 38
6BW H24 -0.851 2.569 -1.728 ETKDGv3 39
#