data_67I
#
_chem_comp.id 67I
_chem_comp.name "(2S)-2-azanyl-3-[5,7-bis(bromanyl)-1H-indol-3-yl]propanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H10 Br2 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-01-12
_chem_comp.pdbx_modified_date 2023-11-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 362.017
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 67I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8HYV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBC
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
67I OXT O1 O 0 1 N N N N N N 15.922 19.332 4.091 5.560 -0.799 -0.264 OXT 67I 1
67I C C1 C 0 1 N N N N N N 16.806 18.718 4.750 5.181 0.348 -0.250 C 67I 2
67I O O2 O 0 1 N N N N N N 16.939 18.785 6.021 6.057 1.341 -0.030 O 67I 3
67I CA C2 C 0 1 N N S N N N 17.850 17.941 3.896 3.727 0.664 -0.485 CA 67I 4
67I N N1 N 0 1 N N N N N N 19.081 17.527 4.642 3.083 -0.469 -1.163 N 67I 5
67I CB C3 C 0 1 N N N N N N 17.318 16.674 3.445 3.036 0.916 0.857 CB 67I 6
67I CG C4 C 0 1 Y N N N N N 17.735 16.194 2.026 1.614 1.351 0.615 CG 67I 7
67I CD2 C5 C 0 1 Y N N N N N 17.759 16.867 0.831 0.458 0.476 0.405 CD2 67I 8
67I CE3 C6 C 0 1 Y N N N N N 17.586 18.151 0.429 0.285 -0.909 0.361 CE3 67I 9
67I CZ3 C7 C 0 1 Y N N N N N 17.645 18.531 -0.951 -0.959 -1.431 0.140 CZ3 67I 10
67I BR1 BR1 BR 0 0 N N N N N N 17.445 20.257 -1.436 -1.192 -3.307 0.080 BR1 67I 11
67I CH2 C8 C 0 1 Y N N N N N 17.969 17.577 -1.883 -2.053 -0.595 -0.040 CH2 67I 12
67I CZ2 C9 C 0 1 Y N N N N N 18.182 16.285 -1.424 -1.905 0.775 0.001 CZ2 67I 13
67I BR2 BR2 BR 0 0 N N N N N N 18.576 14.800 -2.617 -3.405 1.899 -0.245 BR2 67I 14
67I CE2 C10 C 0 1 Y N N N N N 18.062 15.949 -0.113 -0.647 1.327 0.224 CE2 67I 15
67I NE1 N2 N 0 1 Y N N N N N 18.237 14.747 0.481 -0.183 2.621 0.319 NE1 67I 16
67I CD1 C11 C 0 1 Y N N N N N 17.999 14.886 1.794 1.164 2.615 0.558 CD1 67I 17
67I H1 H1 H 0 1 N N N N N N 16.275 19.362 6.379 6.980 1.089 0.112 H1 67I 18
67I H2 H2 H 0 1 N N N N N N 18.134 18.563 3.034 3.645 1.554 -1.109 H2 67I 19
67I H3 H3 H 0 1 N N N N N N 19.539 18.338 5.006 3.145 -1.307 -0.604 H3 67I 20
67I H4 H4 H 0 1 N N N N N N 18.826 16.922 5.396 2.123 -0.257 -1.389 H4 67I 21
67I H6 H6 H 0 1 N N N N N N 16.221 16.752 3.459 3.040 -0.002 1.445 H6 67I 22
67I H7 H7 H 0 1 N N N N N N 17.640 15.905 4.163 3.569 1.697 1.398 H7 67I 23
67I H8 H8 H 0 1 N N N N N N 17.398 18.911 1.173 1.132 -1.565 0.499 H8 67I 24
67I H9 H9 H 0 1 N N N N N N 18.055 17.822 -2.931 -3.030 -1.022 -0.213 H9 67I 25
67I H10 H10 H 0 1 N N N N N N 18.499 13.899 0.020 -0.730 3.417 0.233 H10 67I 26
67I H11 H11 H 0 1 N N N N N N 18.015 14.098 2.532 1.777 3.497 0.675 H11 67I 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
67I BR2 CZ2 SING N N 1
67I CH2 CZ2 DOUB Y N 2
67I CH2 CZ3 SING Y N 3
67I BR1 CZ3 SING N N 4
67I CZ2 CE2 SING Y N 5
67I CZ3 CE3 DOUB Y N 6
67I CE2 NE1 SING Y N 7
67I CE2 CD2 DOUB Y N 8
67I CE3 CD2 SING Y N 9
67I NE1 CD1 SING Y N 10
67I CD2 CG SING Y N 11
67I CD1 CG DOUB Y N 12
67I CG CB SING N N 13
67I CB CA SING N N 14
67I CA N SING N N 15
67I CA C SING N N 16
67I OXT C DOUB N N 17
67I C O SING N N 18
67I O H1 SING N N 19
67I CA H2 SING N N 20
67I N H3 SING N N 21
67I N H4 SING N N 22
67I CB H6 SING N N 23
67I CB H7 SING N N 24
67I CE3 H8 SING N N 25
67I CH2 H9 SING N N 26
67I NE1 H10 SING N N 27
67I CD1 H11 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
67I InChI InChI 1.06 "InChI=1S/C11H10Br2N2O2/c12-6-2-7-5(1-9(14)11(16)17)4-15-10(7)8(13)3-6/h2-4,9,15H,1,14H2,(H,16,17)/t9-/m0/s1"
67I InChIKey InChI 1.06 UURVQGNSCUCIQS-VIFPVBQESA-N
67I SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1c[nH]c2c(Br)cc(Br)cc12)C(O)=O"
67I SMILES CACTVS 3.385 "N[CH](Cc1c[nH]c2c(Br)cc(Br)cc12)C(O)=O"
67I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1c(c[nH]2)C[C@@H](C(=O)O)N)Br)Br"
67I SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1c(c[nH]2)CC(C(=O)O)N)Br)Br"
#
_pdbx_chem_comp_identifier.comp_id 67I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-[5,7-bis(bromanyl)-1~{H}-indol-3-yl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
67I 'Create component' 2023-01-12 PDBC
67I 'Initial release' 2023-11-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
67I OXT O 12.184 3.397 1
67I C C 10.716 3.087 2
67I O O 9.714 4.204 3
67I CA C 10.250 1.661 4
67I N N 11.252 0.545 5
67I CB C 8.783 1.352 6
67I CG C 8.316 -0.073 7
67I CD2 C 6.897 -0.531 8
67I CE3 C 5.598 0.219 9
67I CZ3 C 4.299 -0.531 10
67I BR1 Br 3.000 0.219 11
67I CH2 C 4.299 -2.031 12
67I CZ2 C 5.598 -2.781 13
67I BR2 Br 5.598 -4.281 14
67I CE2 C 6.897 -2.031 15
67I NE1 N 8.316 -2.488 16
67I CD1 C 9.192 -1.281 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
67I BR2 CZ2 SINGLE NONE 1
67I CH2 CZ2 DOUBLE NONE 2
67I CH2 CZ3 SINGLE NONE 3
67I BR1 CZ3 SINGLE NONE 4
67I CZ2 CE2 SINGLE NONE 5
67I CZ3 CE3 DOUBLE NONE 6
67I CE2 NE1 SINGLE NONE 7
67I CE2 CD2 DOUBLE NONE 8
67I CE3 CD2 SINGLE NONE 9
67I NE1 CD1 SINGLE NONE 10
67I CD2 CG SINGLE NONE 11
67I CD1 CG DOUBLE NONE 12
67I CG CB SINGLE NONE 13
67I CB CA SINGLE NONE 14
67I CA N SINGLE BEGINWEDGE 15
67I CA C SINGLE NONE 16
67I OXT C DOUBLE NONE 17
67I C O SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
67I MurckoScaffold S1 scaffold 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
67I indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
67I peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
67I phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
67I pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
67I CG S1 1
67I CD2 S1 1
67I CE3 S1 1
67I CZ3 S1 1
67I CH2 S1 1
67I CZ2 S1 1
67I CE2 S1 1
67I NE1 S1 1
67I CD1 S1 1
67I CE2 F1 1
67I CD2 F1 1
67I CG F1 1
67I CD1 F1 1
67I NE1 F1 1
67I CE3 F1 1
67I CZ3 F1 1
67I CH2 F1 1
67I CZ2 F1 1
67I OXT F2 1
67I C F2 1
67I CA F2 1
67I N F2 1
67I CD2 F3 1
67I CE2 F3 1
67I CZ2 F3 1
67I CH2 F3 1
67I CZ3 F3 1
67I CE3 F3 1
67I CE2 F4 1
67I CD2 F4 1
67I CG F4 1
67I CD1 F4 1
67I NE1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 67I
_pdbe_chem_comp_rdkit_properties.exactmw 359.911
_pdbe_chem_comp_rdkit_properties.amw 362.021
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.182
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 128.758
_pdbe_chem_comp_rdkit_properties.tpsa 79.110
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.164
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.542
_pdbe_chem_comp_rdkit_properties.chi0v 11.139
_pdbe_chem_comp_rdkit_properties.chi1v 5.793
_pdbe_chem_comp_rdkit_properties.chi2v 2.836
_pdbe_chem_comp_rdkit_properties.chi3v 2.836
_pdbe_chem_comp_rdkit_properties.chi4v 2.327
_pdbe_chem_comp_rdkit_properties.chi0n 17.967
_pdbe_chem_comp_rdkit_properties.chi1n 8.957
_pdbe_chem_comp_rdkit_properties.chi2n 1.865
_pdbe_chem_comp_rdkit_properties.chi3n 1.865
_pdbe_chem_comp_rdkit_properties.chi4n 1.179
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.850
_pdbe_chem_comp_rdkit_properties.kappa1 5.029
_pdbe_chem_comp_rdkit_properties.kappa2 4.796
_pdbe_chem_comp_rdkit_properties.kappa3 2.535
_pdbe_chem_comp_rdkit_properties.Phi 1.419
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
67I UniChem ChEBI 231978
67I UniChem SureChEMBL SCHEMBL5079577
67I UniChem PubChem 69304000
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
67I OXT -3.510 -2.090 0.656 ETKDGv3 1
67I C -3.475 -1.009 0.008 ETKDGv3 2
67I O -4.609 -0.571 -0.670 ETKDGv3 3
67I CA -2.212 -0.191 -0.041 ETKDGv3 4
67I N -1.817 0.237 1.304 ETKDGv3 5
67I CB -1.080 -0.987 -0.712 ETKDGv3 6
67I CG 0.149 -0.144 -0.892 ETKDGv3 7
67I CD2 1.263 -0.002 0.041 ETKDGv3 8
67I CE3 1.531 -0.659 1.332 ETKDGv3 9
67I CZ3 2.645 -0.312 2.002 ETKDGv3 10
67I BR1 3.042 -1.130 3.681 ETKDGv3 11
67I CH2 3.576 0.713 1.442 ETKDGv3 12
67I CZ2 3.311 1.302 0.261 ETKDGv3 13
67I BR2 4.494 2.617 -0.461 ETKDGv3 14
67I CE2 2.084 0.904 -0.455 ETKDGv3 15
67I NE1 1.600 1.409 -1.691 ETKDGv3 16
67I CD1 0.372 0.709 -1.893 ETKDGv3 17
67I H1 -5.467 -1.109 -0.649 ETKDGv3 18
67I H2 -2.410 0.717 -0.655 ETKDGv3 19
67I H3 -2.588 0.815 1.711 ETKDGv3 20
67I H4 -1.696 -0.602 1.918 ETKDGv3 21
67I H6 -1.418 -1.346 -1.709 ETKDGv3 22
67I H7 -0.826 -1.882 -0.103 ETKDGv3 23
67I H8 0.849 -1.399 1.728 ETKDGv3 24
67I H9 4.467 0.982 1.993 ETKDGv3 25
67I H10 2.017 2.152 -2.294 ETKDGv3 26
67I H11 -0.292 0.876 -2.731 ETKDGv3 27
#