data_65T
#
_chem_comp.id 65T
_chem_comp.name '(2E)-2-[(4-sulfamoylphenyl)methoxyimino]ethanoic acid'
_chem_comp.type 'L-peptide NH3 amino terminus'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C9 H10 N2 O5 S'
_chem_comp.mon_nstd_parent_comp_id FB2
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-07-23
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 258.251
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 65T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7OYR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
65T OXY OXY O 0 1 N Y N Y N Y -0.017 8.982 13.234 6.908 1.383 0.014 OXY 65T 1
65T C C C 0 1 N N N Y N Y -0.558 9.178 14.468 6.021 0.369 0.004 C 65T 2
65T O O O 0 1 N N N Y N Y -0.162 10.046 15.234 6.412 -0.780 -0.008 O 65T 3
65T CA CA C 0 1 N N N N N N -1.632 8.319 14.963 4.574 0.655 0.007 CA 65T 4
65T N3 N3 N 0 1 N N N N N N -2.178 7.468 14.196 3.722 -0.317 -0.003 N3 65T 5
65T O4 O4 O 0 1 N N N N N N -3.060 6.607 14.888 2.333 -0.043 -0.000 O4 65T 6
65T C11 C11 C 0 1 N N N N N N -3.718 5.750 13.941 1.510 -1.211 -0.013 C11 65T 7
65T C01 C12 C 0 1 Y N N N N N -4.290 4.581 14.706 0.059 -0.802 -0.008 C01 65T 8
65T C02 C13 C 0 1 Y N N N N N -5.645 4.496 14.964 -0.606 -0.603 -1.204 C02 65T 9
65T C03 C14 C 0 1 Y N N N N N -6.181 3.416 15.647 -1.937 -0.228 -1.200 C03 65T 10
65T C04 C15 C 0 1 Y N N N N N -5.353 2.391 16.068 -2.602 -0.054 -0.001 C04 65T 11
65T S07 S1 S 0 1 N N N N N N -6.007 1.002 16.956 -4.298 0.424 0.004 S07 65T 12
65T NP0 N4 N 0 1 N N N N N N -5.452 -0.311 16.254 -5.199 -0.965 -0.011 NP0 65T 13
65T O09 O5 O 0 1 N N N N N N -7.439 1.085 16.810 -4.537 1.044 1.261 O09 65T 14
65T O08 O6 O 0 1 N N N N N N -5.480 1.094 18.290 -4.536 1.071 -1.238 O08 65T 15
65T C05 C16 C 0 1 Y N N N N N -3.992 2.472 15.833 -1.937 -0.255 1.195 C05 65T 16
65T C06 C17 C 0 1 Y N N N N N -3.470 3.562 15.147 -0.608 -0.633 1.191 C06 65T 17
65T H02 H22 H 0 1 N N N N N N -6.299 5.287 14.627 -0.086 -0.739 -2.140 H02 65T 18
65T H03 H23 H 0 1 N N N N N N -7.241 3.375 15.850 -2.457 -0.071 -2.133 H03 65T 19
65T HP01 H24 H 0 0 N N N N N N -5.802 -1.118 16.730 -4.758 -1.829 -0.020 HP01 65T 20
65T HP02 H25 H 0 0 N N N N N N -5.752 -0.331 15.300 -6.168 -0.915 -0.010 HP02 65T 21
65T H05 H26 H 0 1 N N N N N N -3.336 1.689 16.182 -2.457 -0.119 2.131 H05 65T 22
65T H06 H27 H 0 1 N N N N N N -2.408 3.612 14.956 -0.089 -0.793 2.124 H06 65T 23
65T HXY HXY H 0 1 N Y N Y N Y 0.682 9.609 13.091 7.846 1.146 0.012 H1 65T 24
65T H2 H2 H 0 1 N N N N N N -1.963 8.409 15.987 4.226 1.678 0.017 H2 65T 25
65T H3 H3 H 0 1 N N N N N N -2.995 5.392 13.193 1.720 -1.794 -0.909 H3 65T 26
65T H4 H4 H 0 1 N N N N N N -4.526 6.299 13.436 1.720 -1.813 0.871 H4 65T 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
65T OXY C SING N N 1
65T C11 C01 SING N N 2
65T C11 O4 SING N N 3
65T N3 O4 SING N N 4
65T N3 CA DOUB N Z 5
65T C CA SING N N 6
65T C O DOUB N N 7
65T C01 C02 DOUB Y N 8
65T C01 C06 SING Y N 9
65T C02 C03 SING Y N 10
65T C06 C05 DOUB Y N 11
65T C03 C04 DOUB Y N 12
65T C05 C04 SING Y N 13
65T C04 S07 SING N N 14
65T NP0 S07 SING N N 15
65T O09 S07 DOUB N N 16
65T S07 O08 DOUB N N 17
65T C02 H02 SING N N 18
65T C03 H03 SING N N 19
65T NP0 HP01 SING N N 20
65T NP0 HP02 SING N N 21
65T C05 H05 SING N N 22
65T C06 H06 SING N N 23
65T OXY HXY SING N N 24
65T CA H2 SING N N 25
65T C11 H3 SING N N 26
65T C11 H4 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
65T InChI InChI 1.03 'InChI=1S/C9H10N2O5S/c10-17(14,15)8-3-1-7(2-4-8)6-16-11-5-9(12)13/h1-5H,6H2,(H,12,13)(H2,10,14,15)/b11-5-'
65T InChIKey InChI 1.03 GXYBLSAGRYTVJO-WZUFQYTHSA-N
65T SMILES_CANONICAL CACTVS 3.385 'N[S](=O)(=O)c1ccc(CO\N=C/C(O)=O)cc1'
65T SMILES CACTVS 3.385 'N[S](=O)(=O)c1ccc(CON=CC(O)=O)cc1'
65T SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'c1cc(ccc1CO/N=C/C(=O)O)S(=O)(=O)N'
65T SMILES 'OpenEye OEToolkits' 2.0.7 'c1cc(ccc1CON=CC(=O)O)S(=O)(=O)N'
#
_pdbx_chem_comp_identifier.comp_id 65T
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier '(2~{E})-2-[(4-sulfamoylphenyl)methoxyimino]ethanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
65T 'Create component' 2021-07-23 PDBE
65T 'Modify coordinates' 2021-08-07 PDBE
65T 'Modify linking type' 2021-08-07 PDBE
65T 'Modify leaving atom flag' 2021-08-07 PDBE
65T 'Other modification' 2022-08-05 RCSB
65T 'Initial release' 2023-01-18 RCSB
65T 'Modify backbone' 2023-11-03 PDBE
65T 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 65T
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position N-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
65T OXY O 7.259 0.579 1
65T C C 5.959 1.328 2
65T O O 5.958 2.828 3
65T CA C 4.661 0.577 4
65T N3 N 3.361 1.326 5
65T O4 O 2.063 0.575 6
65T C11 C 0.763 1.324 7
65T C01 C -0.535 0.573 8
65T C02 C -1.835 1.322 9
65T C03 C -3.134 0.571 10
65T C04 C -3.132 -0.929 11
65T S07 S -4.430 -1.680 12
65T NP0 N -5.729 -2.431 13
65T O09 O -5.182 -0.382 14
65T O08 O -3.680 -2.978 15
65T C05 C -1.832 -1.678 16
65T C06 C -0.534 -0.927 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
65T OXY C SINGLE NONE 1
65T C11 C01 SINGLE NONE 2
65T C11 O4 SINGLE NONE 3
65T N3 O4 SINGLE ENDDOWNRIGHT 4
65T N3 CA DOUBLE NONE 5
65T C CA SINGLE ENDDOWNRIGHT 6
65T C O DOUBLE NONE 7
65T C01 C02 DOUBLE NONE 8
65T C01 C06 SINGLE NONE 9
65T C02 C03 SINGLE NONE 10
65T C06 C05 DOUBLE NONE 11
65T C03 C04 DOUBLE NONE 12
65T C05 C04 SINGLE NONE 13
65T C04 S07 SINGLE NONE 14
65T NP0 S07 SINGLE NONE 15
65T O09 S07 DOUBLE NONE 16
65T S07 O08 DOUBLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
65T MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
65T phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
65T C01 S1 1
65T C02 S1 1
65T C03 S1 1
65T C04 S1 1
65T C05 S1 1
65T C06 S1 1
65T C01 F1 1
65T C02 F1 1
65T C03 F1 1
65T C04 F1 1
65T C05 F1 1
65T C06 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 65T
_pdbe_chem_comp_rdkit_properties.exactmw 258.031
_pdbe_chem_comp_rdkit_properties.amw 258.255
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.111
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 111.798
_pdbe_chem_comp_rdkit_properties.tpsa 119.050
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.242
_pdbe_chem_comp_rdkit_properties.CrippenMR 59.036
_pdbe_chem_comp_rdkit_properties.chi0v 8.660
_pdbe_chem_comp_rdkit_properties.chi1v 5.179
_pdbe_chem_comp_rdkit_properties.chi2v 1.910
_pdbe_chem_comp_rdkit_properties.chi3v 1.910
_pdbe_chem_comp_rdkit_properties.chi4v 0.970
_pdbe_chem_comp_rdkit_properties.chi0n 17.844
_pdbe_chem_comp_rdkit_properties.chi1n 8.541
_pdbe_chem_comp_rdkit_properties.chi2n 1.190
_pdbe_chem_comp_rdkit_properties.chi3n 1.190
_pdbe_chem_comp_rdkit_properties.chi4n 0.610
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.930
_pdbe_chem_comp_rdkit_properties.kappa1 4.747
_pdbe_chem_comp_rdkit_properties.kappa2 5.414
_pdbe_chem_comp_rdkit_properties.kappa3 4.617
_pdbe_chem_comp_rdkit_properties.Phi 1.512
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
65T OXY 6.447 -1.869 0.273 ETKDGv3 1
65T C 5.666 -0.855 -0.271 ETKDGv3 2
65T O 6.210 0.076 -0.925 ETKDGv3 3
65T CA 4.214 -0.878 -0.078 ETKDGv3 4
65T N3 3.469 0.055 -0.576 ETKDGv3 5
65T O4 2.105 0.032 -0.394 ETKDGv3 6
65T C11 1.291 1.057 -0.941 ETKDGv3 7
65T C01 -0.144 0.791 -0.593 ETKDGv3 8
65T C02 -0.896 -0.017 -1.359 ETKDGv3 9
65T C03 -2.297 -0.306 -0.986 ETKDGv3 10
65T C04 -2.824 0.229 0.126 ETKDGv3 11
65T S07 -4.487 -0.129 0.581 ETKDGv3 12
65T NP0 -4.550 -1.670 1.361 ETKDGv3 13
65T O09 -4.999 0.930 1.516 ETKDGv3 14
65T O08 -5.353 -0.149 -0.647 ETKDGv3 15
65T C05 -1.988 1.096 0.988 ETKDGv3 16
65T C06 -0.721 1.361 0.649 ETKDGv3 17
65T H02 -0.487 -0.468 -2.255 ETKDGv3 18
65T H03 -2.887 -0.957 -1.618 ETKDGv3 19
65T HP01 -5.537 -1.815 1.672 ETKDGv3 20
65T HP02 -3.969 -1.598 2.226 ETKDGv3 21
65T H05 -2.397 1.515 1.898 ETKDGv3 22
65T H06 -0.116 1.992 1.289 ETKDGv3 23
65T HXY 7.453 -1.872 0.152 ETKDGv3 24
65T H2 3.766 -1.686 0.487 ETKDGv3 25
65T H3 1.607 2.040 -0.530 ETKDGv3 26
65T H4 1.424 1.089 -2.045 ETKDGv3 27
#