data_5XK
#
_chem_comp.id 5XK
_chem_comp.name 6-chloranyl-3-(2-ethylbutyl)-4~{H}-pyrrolo[1,2-a]quinazolin-5-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H19 Cl N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-12-22
_chem_comp.pdbx_modified_date 2016-05-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 302.799
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5XK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5FH8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5XK C4 C1 C 0 1 N N N N N N 0.456 28.127 13.424 -4.704 -0.488 -2.346 C4 5XK 1
5XK C14 C2 C 0 1 Y N N N N N 3.427 26.919 7.074 2.120 0.076 0.018 C14 5XK 2
5XK C5 C3 C 0 1 N N N N N N 0.617 29.371 10.634 -3.047 -0.013 1.094 C5 5XK 3
5XK C6 C4 C 0 1 Y N N N N N 0.604 28.348 9.786 -1.814 -0.836 0.828 C6 5XK 4
5XK C11 C5 C 0 1 Y N N N N N 2.793 24.443 5.866 3.805 -2.089 -0.354 C11 5XK 5
5XK C7 C6 C 0 1 Y N N N N N -0.472 27.314 9.639 -1.742 -2.241 0.799 C7 5XK 6
5XK C8 C7 C 0 1 Y N N N N N 0.089 26.250 8.709 -0.466 -2.579 0.529 C8 5XK 7
5XK C9 C8 C 0 1 Y N N N N N 2.206 26.250 7.314 1.617 -1.231 0.109 C9 5XK 8
5XK C10 C9 C 0 1 Y N N N N N 1.895 25.031 6.727 2.469 -2.308 -0.079 C10 5XK 9
5XK C12 C10 C 0 1 Y N N N N N 4.008 25.061 5.597 4.306 -0.801 -0.434 C12 5XK 10
5XK C13 C11 C 0 1 Y N N N N N 4.325 26.260 6.211 3.472 0.285 -0.255 C13 5XK 11
5XK N1 N1 N 0 1 N N N N N N 2.747 28.692 8.646 -0.098 0.950 0.489 N1 5XK 12
5XK C3 C12 C 0 1 N N N N N N 0.127 29.566 13.052 -4.189 -0.869 -0.957 C3 5XK 13
5XK CL CL1 CL 0 0 N N N N N N 5.980 26.795 6.003 4.104 1.899 -0.356 CL 5XK 14
5XK C15 C13 C 0 1 N N N N N N 3.691 28.217 7.743 1.198 1.208 0.223 C15 5XK 15
5XK O O1 O 0 1 N N N N N N 4.645 28.921 7.432 1.600 2.354 0.152 O 5XK 16
5XK C16 C14 C 0 1 Y N N N N N 1.645 28.029 8.856 -0.567 -0.357 0.573 C16 5XK 17
5XK N N2 N 0 1 Y N N N N N 1.325 26.853 8.213 0.266 -1.427 0.388 N 5XK 18
5XK C2 C15 C 0 1 N N N N N N -0.417 29.725 11.658 -3.691 0.385 -0.236 C2 5XK 19
5XK C1 C16 C 0 1 N N N N N N -0.787 31.200 11.384 -4.870 1.324 0.029 C1 5XK 20
5XK C C17 C 0 1 N N N N N N -1.595 31.367 10.131 -4.354 2.636 0.623 C 5XK 21
5XK H1 H1 H 0 1 N N N N N N 0.846 28.093 14.452 -5.589 0.141 -2.246 H1 5XK 22
5XK H2 H2 H 0 1 N N N N N N -0.455 27.514 13.357 -3.929 0.059 -2.883 H2 5XK 23
5XK H3 H3 H 0 1 N N N N N N 1.214 27.734 12.731 -4.961 -1.391 -2.899 H3 5XK 24
5XK H4 H4 H 0 1 N N N N N N 1.548 29.248 11.207 -3.756 -0.598 1.680 H4 5XK 25
5XK H5 H5 H 0 1 N N N N N N 0.695 30.263 9.995 -2.773 0.885 1.648 H5 5XK 26
5XK H6 H6 H 0 1 N N N N N N 2.553 23.499 5.399 4.466 -2.931 -0.500 H6 5XK 27
5XK H7 H7 H 0 1 N N N N N N -1.448 27.323 10.101 -2.562 -2.925 0.963 H7 5XK 28
5XK H8 H8 H 0 1 N N N N N N -0.326 25.281 8.472 -0.084 -3.586 0.439 H8 5XK 29
5XK H9 H9 H 0 1 N N N N N N 0.954 24.547 6.945 2.088 -3.317 -0.011 H9 5XK 30
5XK H10 H10 H 0 1 N N N N N N 4.705 24.606 4.909 5.353 -0.644 -0.650 H10 5XK 31
5XK H11 H11 H 0 1 N N N N N N 2.914 29.547 9.137 -0.714 1.688 0.625 H11 5XK 32
5XK H12 H12 H 0 1 N N N N N N 1.046 30.164 13.136 -4.997 -1.322 -0.382 H12 5XK 33
5XK H13 H13 H 0 1 N N N N N N -0.623 29.945 13.762 -3.370 -1.581 -1.056 H13 5XK 34
5XK H14 H14 H 0 1 N N N N N N -1.309 29.094 11.528 -2.955 0.894 -0.858 H14 5XK 35
5XK H15 H15 H 0 1 N N N N N N 0.140 31.784 11.286 -5.390 1.528 -0.907 H15 5XK 36
5XK H16 H16 H 0 1 N N N N N N -1.372 31.581 12.234 -5.558 0.853 0.731 H16 5XK 37
5XK H17 H17 H 0 1 N N N N N N -1.830 32.432 9.985 -3.928 2.447 1.608 H17 5XK 38
5XK H18 H18 H 0 1 N N N N N N -1.018 30.997 9.271 -3.589 3.054 -0.031 H18 5XK 39
5XK H19 H19 H 0 1 N N N N N N -2.530 30.794 10.219 -5.179 3.343 0.714 H19 5XK 40
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5XK C12 C11 DOUB Y N 1
5XK C12 C13 SING Y N 2
5XK C11 C10 SING Y N 3
5XK CL C13 SING N N 4
5XK C13 C14 DOUB Y N 5
5XK C10 C9 DOUB Y N 6
5XK C14 C9 SING Y N 7
5XK C14 C15 SING N N 8
5XK C9 N SING N N 9
5XK O C15 DOUB N N 10
5XK C15 N1 SING N N 11
5XK N C8 SING Y N 12
5XK N C16 SING Y N 13
5XK N1 C16 SING N N 14
5XK C8 C7 DOUB Y N 15
5XK C16 C6 DOUB Y N 16
5XK C7 C6 SING Y N 17
5XK C6 C5 SING N N 18
5XK C C1 SING N N 19
5XK C5 C2 SING N N 20
5XK C1 C2 SING N N 21
5XK C2 C3 SING N N 22
5XK C3 C4 SING N N 23
5XK C4 H1 SING N N 24
5XK C4 H2 SING N N 25
5XK C4 H3 SING N N 26
5XK C5 H4 SING N N 27
5XK C5 H5 SING N N 28
5XK C11 H6 SING N N 29
5XK C7 H7 SING N N 30
5XK C8 H8 SING N N 31
5XK C10 H9 SING N N 32
5XK C12 H10 SING N N 33
5XK N1 H11 SING N N 34
5XK C3 H12 SING N N 35
5XK C3 H13 SING N N 36
5XK C2 H14 SING N N 37
5XK C1 H15 SING N N 38
5XK C1 H16 SING N N 39
5XK C H17 SING N N 40
5XK C H18 SING N N 41
5XK C H19 SING N N 42
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5XK InChI InChI 1.03 InChI=1S/C17H19ClN2O/c1-3-11(4-2)10-12-8-9-20-14-7-5-6-13(18)15(14)17(21)19-16(12)20/h5-9,11H,3-4,10H2,1-2H3,(H,19,21)
5XK InChIKey InChI 1.03 JCTQQDJVUAOWPC-UHFFFAOYSA-N
5XK SMILES_CANONICAL CACTVS 3.385 CCC(CC)Cc1ccn2c1NC(=O)c3c(Cl)cccc23
5XK SMILES CACTVS 3.385 CCC(CC)Cc1ccn2c1NC(=O)c3c(Cl)cccc23
5XK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 CCC(CC)Cc1ccn-2c1NC(=O)c3c2cccc3Cl
5XK SMILES "OpenEye OEToolkits" 2.0.4 CCC(CC)Cc1ccn-2c1NC(=O)c3c2cccc3Cl
#
_pdbx_chem_comp_identifier.comp_id 5XK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.4
_pdbx_chem_comp_identifier.identifier 6-chloranyl-3-(2-ethylbutyl)-4~{H}-pyrrolo[1,2-a]quinazolin-5-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5XK 'Create component' 2015-12-22 EBI
5XK 'Initial release' 2016-06-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5XK C4 C 3.000 -1.723 1
5XK C14 C 11.421 1.162 2
5XK C5 C 6.937 -2.221 3
5XK C6 C 7.403 -0.795 4
5XK C11 C 11.444 4.266 5
5XK C7 C 6.528 0.412 6
5XK C8 C 7.403 1.619 7
5XK C9 C 10.122 1.912 8
5XK C10 C 10.098 3.474 9
5XK C12 C 12.798 3.484 10
5XK C13 C 12.786 1.922 11
5XK N1 N 10.122 -1.088 12
5XK C3 C 4.468 -1.414 13
5XK CL Cl 14.076 1.157 14
5XK C15 C 11.421 -0.338 15
5XK O O 12.720 -1.088 16
5XK C16 C 8.822 -0.338 17
5XK N N 8.822 1.162 18
5XK C2 C 5.470 -2.530 19
5XK C1 C 5.004 -3.956 20
5XK C C 3.536 -4.266 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5XK C12 C11 DOUBLE NONE 1
5XK C12 C13 SINGLE NONE 2
5XK C11 C10 SINGLE NONE 3
5XK CL C13 SINGLE NONE 4
5XK C13 C14 DOUBLE NONE 5
5XK C10 C9 DOUBLE NONE 6
5XK C14 C9 SINGLE NONE 7
5XK C14 C15 SINGLE NONE 8
5XK C9 N SINGLE NONE 9
5XK O C15 DOUBLE NONE 10
5XK C15 N1 SINGLE NONE 11
5XK N C8 SINGLE NONE 12
5XK N C16 SINGLE NONE 13
5XK N1 C16 SINGLE NONE 14
5XK C8 C7 DOUBLE NONE 15
5XK C16 C6 DOUBLE NONE 16
5XK C7 C6 SINGLE NONE 17
5XK C6 C5 SINGLE NONE 18
5XK C C1 SINGLE NONE 19
5XK C5 C2 SINGLE NONE 20
5XK C1 C2 SINGLE NONE 21
5XK C2 C3 SINGLE NONE 22
5XK C3 C4 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5XK MurckoScaffold S1 scaffold 'O=c1[nH]c2cccn2c2ccccc12' InChI=1S/C11H8N2O/c14-11-8-4-1-2-5-9(8)13-7-3-6-10(13)12-11/h1-7H,(H,12,14) TXFBAPVBNSGTJI-UHFFFAOYSA-N
5XK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5XK pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
5XK pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
5XK quinazoline F4 fragment c1ccc2ncncc2c1 InChI=1S/C8H6N2/c1-2-4-8-7(3-1)5-9-6-10-8/h1-6H JWVCLYRUEFBMGU-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5XK C14 S1 1
5XK C6 S1 1
5XK C11 S1 1
5XK C7 S1 1
5XK C8 S1 1
5XK C9 S1 1
5XK C10 S1 1
5XK C12 S1 1
5XK C13 S1 1
5XK N1 S1 1
5XK C15 S1 1
5XK O S1 1
5XK C16 S1 1
5XK N S1 1
5XK C14 F1 1
5XK C13 F1 1
5XK C12 F1 1
5XK C11 F1 1
5XK C10 F1 1
5XK C9 F1 1
5XK C14 F2 1
5XK C9 F2 1
5XK N F2 1
5XK C16 F2 1
5XK N1 F2 1
5XK C15 F2 1
5XK C8 F3 1
5XK C7 F3 1
5XK C6 F3 1
5XK C16 F3 1
5XK N F3 1
5XK C12 F4 1
5XK C11 F4 1
5XK C10 F4 1
5XK C9 F4 1
5XK C14 F4 1
5XK C13 F4 1
5XK C15 F4 1
5XK N1 F4 1
5XK C16 F4 1
5XK N F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5XK
_pdbe_chem_comp_rdkit_properties.exactmw 302.119
_pdbe_chem_comp_rdkit_properties.amw 302.805
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 40
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.353
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 154.858
_pdbe_chem_comp_rdkit_properties.tpsa 37.270
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.615
_pdbe_chem_comp_rdkit_properties.CrippenMR 84.843
_pdbe_chem_comp_rdkit_properties.chi0v 10.937
_pdbe_chem_comp_rdkit_properties.chi1v 5.889
_pdbe_chem_comp_rdkit_properties.chi2v 2.966
_pdbe_chem_comp_rdkit_properties.chi3v 2.966
_pdbe_chem_comp_rdkit_properties.chi4v 2.013
_pdbe_chem_comp_rdkit_properties.chi0n 29.181
_pdbe_chem_comp_rdkit_properties.chi1n 14.958
_pdbe_chem_comp_rdkit_properties.chi2n 2.682
_pdbe_chem_comp_rdkit_properties.chi3n 2.682
_pdbe_chem_comp_rdkit_properties.chi4n 1.795
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.740
_pdbe_chem_comp_rdkit_properties.kappa1 3.962
_pdbe_chem_comp_rdkit_properties.kappa2 5.567
_pdbe_chem_comp_rdkit_properties.kappa3 2.357
_pdbe_chem_comp_rdkit_properties.Phi 1.050
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5XK UniChem ZINC ZINC000584905240
5XK UniChem PubChem 119058116
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5XK C4 -3.500 -1.737 -0.655 ETKDGv3 1
5XK C14 3.479 0.954 0.115 ETKDGv3 2
5XK C5 -1.662 -0.013 1.296 ETKDGv3 3
5XK C6 -0.311 -0.631 1.070 ETKDGv3 4
5XK C11 5.513 -0.966 -0.385 ETKDGv3 5
5XK C7 -0.021 -2.070 0.988 ETKDGv3 6
5XK C8 1.270 -2.206 0.698 ETKDGv3 7
5XK C9 3.195 -0.513 0.221 ETKDGv3 8
5XK C10 4.161 -1.414 -0.016 ETKDGv3 9
5XK C12 5.784 0.338 -0.484 ETKDGv3 10
5XK C13 4.734 1.350 -0.227 ETKDGv3 11
5XK N1 1.045 1.407 0.736 ETKDGv3 12
5XK C3 -2.508 -0.645 -1.065 ETKDGv3 13
5XK CL 5.221 3.035 -0.395 ETKDGv3 14
5XK C15 2.349 1.905 0.394 ETKDGv3 15
5XK O 2.516 3.152 0.335 ETKDGv3 16
5XK C16 0.830 -0.001 0.818 ETKDGv3 17
5XK N 1.871 -0.920 0.583 ETKDGv3 18
5XK C2 -2.315 0.486 -0.016 ETKDGv3 19
5XK C1 -3.621 1.251 0.313 ETKDGv3 20
5XK C -4.262 1.908 -0.910 ETKDGv3 21
5XK H1 -3.547 -2.504 -1.457 ETKDGv3 22
5XK H2 -3.178 -2.241 0.278 ETKDGv3 23
5XK H3 -4.519 -1.320 -0.525 ETKDGv3 24
5XK H4 -2.323 -0.746 1.805 ETKDGv3 25
5XK H5 -1.540 0.839 2.000 ETKDGv3 26
5XK H6 6.289 -1.697 -0.575 ETKDGv3 27
5XK H7 -0.725 -2.881 1.121 ETKDGv3 28
5XK H8 1.780 -3.150 0.560 ETKDGv3 29
5XK H9 3.968 -2.475 0.060 ETKDGv3 30
5XK H10 6.782 0.656 -0.756 ETKDGv3 31
5XK H11 0.267 2.078 0.925 ETKDGv3 32
5XK H12 -2.842 -0.206 -2.028 ETKDGv3 33
5XK H13 -1.529 -1.122 -1.282 ETKDGv3 34
5XK H14 -1.615 1.224 -0.469 ETKDGv3 35
5XK H15 -3.387 2.060 1.040 ETKDGv3 36
5XK H16 -4.358 0.580 0.802 ETKDGv3 37
5XK H17 -5.085 2.577 -0.581 ETKDGv3 38
5XK H18 -4.694 1.142 -1.587 ETKDGv3 39
5XK H19 -3.514 2.516 -1.463 ETKDGv3 40
#