data_5CR
#
_chem_comp.id 5CR
_chem_comp.name N-acetyl-L-phenylalanine
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C11 H13 N O3"
_chem_comp.mon_nstd_parent_comp_id PHE
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-10-12
_chem_comp.pdbx_modified_date 2025-05-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 207.226
_chem_comp.one_letter_code F
_chem_comp.three_letter_code 5CR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5FJT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5CR CAA CAA C 0 1 N N N N N N 46.617 12.237 13.336 -1.531 3.205 0.211 CAA 5CR 1
5CR CAL CAL C 0 1 N N N N N N 45.771 12.416 14.567 -1.470 1.801 -0.333 CAL 5CR 2
5CR OAB OAB O 0 1 N N N N N N 46.056 11.782 15.594 -1.858 1.568 -1.458 OAB 5CR 3
5CR N N N 0 1 N N N N N N 44.737 13.322 14.365 -0.982 0.803 0.432 N 5CR 4
5CR CA CA C 0 1 N N S N N N 43.685 13.741 15.334 -0.923 -0.562 -0.097 CA 5CR 5
5CR C C C 0 1 N N N N N N 44.315 14.333 16.637 -2.250 -1.242 0.117 C 5CR 6
5CR O O O 0 1 N N N N N N 45.499 14.745 16.564 -3.154 -0.647 0.655 OXT 5CR 7
5CR OXT OXT O 0 1 N Y N N N N 43.561 14.420 17.663 -2.429 -2.508 -0.291 O 5CR 8
5CR CB CB C 0 1 N N N N N N 42.622 12.642 15.639 0.173 -1.343 0.632 CB 5CR 9
5CR CG CG C 0 1 Y N N N N N 41.666 12.697 14.597 1.516 -0.735 0.319 CG 5CR 10
5CR CD1 CD1 C 0 1 Y N N N N N 41.550 11.711 13.627 2.023 0.271 1.120 CD1 5CR 11
5CR CE1 CE1 C 0 1 Y N N N N N 40.602 11.824 12.603 3.255 0.829 0.833 CE1 5CR 12
5CR CZ CZ C 0 1 Y N N N N N 39.743 12.903 12.508 3.980 0.380 -0.255 CZ 5CR 13
5CR CE2 CE2 C 0 1 Y N N N N N 39.829 13.880 13.494 3.474 -0.627 -1.055 CE2 5CR 14
5CR CD2 CD2 C 0 1 Y N N N N N 40.779 13.777 14.524 2.244 -1.188 -0.766 CD2 5CR 15
5CR HAA1 HAA1 H 0 0 N N N N N N 47.422 11.517 13.545 -1.951 3.869 -0.545 HAA1 5CR 16
5CR HAA2 HAA2 H 0 0 N N N N N N 45.992 11.859 12.514 -2.161 3.223 1.100 HAA2 5CR 17
5CR HAA3 HAA3 H 0 0 N N N N N N 47.055 13.204 13.049 -0.526 3.539 0.470 HAA3 5CR 18
5CR H H H 0 1 N N N N N N 44.693 13.744 13.460 -0.671 0.989 1.331 H 5CR 19
5CR HA HA H 0 1 N N N N N N 43.135 14.569 14.863 -0.698 -0.529 -1.163 HA 5CR 20
5CR HB1C HB1C H 0 0 N N N N N N 43.098 11.651 15.664 -0.004 -1.300 1.707 HB1C 5CR 21
5CR HB2C HB2C H 0 0 N N N N N N 42.139 12.841 16.607 0.159 -2.382 0.303 HB2C 5CR 22
5CR HXT HXT H 0 1 N Y N N N N 44.033 14.846 18.368 -3.298 -2.902 -0.133 HB 5CR 23
5CR HD1 HD1 H 0 1 N N N N N N 42.198 10.848 13.663 1.456 0.622 1.970 HD1 5CR 24
5CR HD2 HD2 H 0 1 N N N N N N 40.826 14.550 15.277 1.850 -1.977 -1.389 HD2 5CR 25
5CR HE1 HE1 H 0 1 N N N N N N 40.540 11.041 11.862 3.650 1.616 1.458 HE1 5CR 26
5CR HZ HZ H 0 1 N N N N N N 39.032 12.984 11.699 4.942 0.816 -0.480 HZ 5CR 27
5CR HE2 HE2 H 0 1 N N N N N N 39.159 14.726 13.468 4.040 -0.978 -1.905 HE2 5CR 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CR CAA CAL SING N N 1
5CR CAL OAB DOUB N N 2
5CR CAL N SING N N 3
5CR N CA SING N N 4
5CR CA C SING N N 5
5CR CA CB SING N N 6
5CR C OXT SING N N 7
5CR C O DOUB N N 8
5CR CB CG SING N N 9
5CR CG CD1 SING Y N 10
5CR CG CD2 DOUB Y N 11
5CR CD1 CE1 DOUB Y N 12
5CR CE1 CZ SING Y N 13
5CR CZ CE2 DOUB Y N 14
5CR CE2 CD2 SING Y N 15
5CR CAA HAA1 SING N N 16
5CR CAA HAA2 SING N N 17
5CR CAA HAA3 SING N N 18
5CR N H SING N N 19
5CR CA HA SING N N 20
5CR CB HB1C SING N N 21
5CR CB HB2C SING N N 22
5CR OXT HXT SING N N 23
5CR CD1 HD1 SING N N 24
5CR CD2 HD2 SING N N 25
5CR CE1 HE1 SING N N 26
5CR CZ HZ SING N N 27
5CR CE2 HE2 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5CR InChI InChI 1.03 "InChI=1S/C11H13NO3/c1-8(13)12-10(11(14)15)7-9-5-3-2-4-6-9/h2-6,10H,7H2,1H3,(H,12,13)(H,14,15)/t10-/m0/s1"
5CR InChIKey InChI 1.03 CBQJSKKFNMDLON-JTQLQIEISA-N
5CR SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](Cc1ccccc1)C(O)=O"
5CR SMILES CACTVS 3.385 "CC(=O)N[CH](Cc1ccccc1)C(O)=O"
5CR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N[C@@H](Cc1ccccc1)C(=O)O"
5CR SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)NC(Cc1ccccc1)C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id 5CR
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.7.6
_pdbx_chem_comp_identifier.identifier "(2S)-2-acetamido-3-phenyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5CR 'Create component' 2015-10-12 EBI
5CR 'Initial release' 2016-11-16 RCSB
5CR 'Modify PCM' 2024-09-27 PDBE
5CR 'Modify PCM' 2025-05-15 RCSB
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 5CR
_pdbx_chem_comp_pcm.modified_residue_id PHE
_pdbx_chem_comp_pcm.type Acetylation
_pdbx_chem_comp_pcm.category 'Named protein modification'
_pdbx_chem_comp_pcm.position 'Amino-acid backbone'
_pdbx_chem_comp_pcm.polypeptide_position N-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5CR CAA C 8.196 2.250 1
5CR CAL C 6.897 3.000 2
5CR OAB O 6.897 4.500 3
5CR N N 5.598 2.250 4
5CR CA C 5.598 0.750 5
5CR C C 6.897 0.000 6
5CR O O 8.196 0.750 7
5CR OXT O 6.897 -1.500 8
5CR CB C 4.299 0.000 9
5CR CG C 4.299 -1.500 10
5CR CD1 C 3.000 -2.250 11
5CR CE1 C 3.000 -3.750 12
5CR CZ C 4.299 -4.500 13
5CR CE2 C 5.598 -3.750 14
5CR CD2 C 5.598 -2.250 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5CR CAA CAL SINGLE NONE 1
5CR CAL OAB DOUBLE NONE 2
5CR CAL N SINGLE NONE 3
5CR N CA SINGLE NONE 4
5CR CA C SINGLE NONE 5
5CR CA CB SINGLE BEGINDASH 6
5CR C OXT SINGLE NONE 7
5CR C O DOUBLE NONE 8
5CR CB CG SINGLE NONE 9
5CR CG CD1 DOUBLE NONE 10
5CR CG CD2 SINGLE NONE 11
5CR CD1 CE1 SINGLE NONE 12
5CR CE1 CZ DOUBLE NONE 13
5CR CZ CE2 SINGLE NONE 14
5CR CE2 CD2 DOUBLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5CR MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
5CR amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
5CR peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
5CR phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5CR CG S1 1
5CR CD1 S1 1
5CR CE1 S1 1
5CR CZ S1 1
5CR CE2 S1 1
5CR CD2 S1 1
5CR N F1 1
5CR CAL F1 1
5CR OAB F1 1
5CR CAA F1 1
5CR O F2 1
5CR C F2 1
5CR CA F2 1
5CR N F2 1
5CR CG F3 1
5CR CD1 F3 1
5CR CE1 F3 1
5CR CZ F3 1
5CR CE2 F3 1
5CR CD2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 5CR
_pdbe_chem_comp_rdkit_properties.exactmw 207.090
_pdbe_chem_comp_rdkit_properties.amw 207.229
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.273
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 106.333
_pdbe_chem_comp_rdkit_properties.tpsa 66.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.764
_pdbe_chem_comp_rdkit_properties.CrippenMR 55.121
_pdbe_chem_comp_rdkit_properties.chi0v 7.172
_pdbe_chem_comp_rdkit_properties.chi1v 3.560
_pdbe_chem_comp_rdkit_properties.chi2v 1.150
_pdbe_chem_comp_rdkit_properties.chi3v 1.150
_pdbe_chem_comp_rdkit_properties.chi4v 0.657
_pdbe_chem_comp_rdkit_properties.chi0n 20.172
_pdbe_chem_comp_rdkit_properties.chi1n 9.915
_pdbe_chem_comp_rdkit_properties.chi2n 1.150
_pdbe_chem_comp_rdkit_properties.chi3n 1.150
_pdbe_chem_comp_rdkit_properties.chi4n 0.657
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.840
_pdbe_chem_comp_rdkit_properties.kappa1 2.843
_pdbe_chem_comp_rdkit_properties.kappa2 5.143
_pdbe_chem_comp_rdkit_properties.kappa3 3.806
_pdbe_chem_comp_rdkit_properties.Phi 0.975
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5CR UniChem 'KEGG LIGAND' C03519
5CR UniChem ChEBI 16259
5CR UniChem ZINC ZINC000000135391
5CR UniChem eMolecules 531580
5CR UniChem fdasrs NP5BT39467
5CR UniChem SureChEMBL SCHEMBL158613
5CR UniChem HMDB HMDB0000512
5CR UniChem NMRShiftDB 60028225
5CR UniChem ACTor 10172-89-1
5CR UniChem Nikkaji J27.562J
5CR UniChem 'EPA CompTox Dashboard' DTXSID20883539
5CR UniChem MetaboLights MTBLC16259
5CR UniChem BRENDA 134141
5CR UniChem BRENDA 134322
5CR UniChem BRENDA 16997
5CR UniChem BRENDA 2855
5CR UniChem BRENDA 35011
5CR UniChem BRENDA 39024
5CR UniChem BRENDA 47381
5CR UniChem BRENDA 5511
5CR UniChem BRENDA 8248
5CR UniChem BRENDA 94244
5CR UniChem ChemicalBook CB1170986
5CR UniChem MedChemExpress HY-Y0068
5CR UniChem 'Probes And Drugs' PD000193
5CR UniChem CCDC COQHAR
5CR UniChem 'PubChem TPHARMA' 14794340
5CR UniChem PubChem 74839
5CR UniChem Mcule MCULE-1736282363
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5CR CAA 2.586 1.726 -1.133 ETKDGv3 1
5CR CAL 2.078 0.359 -0.811 ETKDGv3 2
5CR OAB 2.252 -0.579 -1.634 ETKDGv3 3
5CR N 1.412 0.123 0.441 ETKDGv3 4
5CR CA 0.788 -1.154 0.811 ETKDGv3 5
5CR C 1.815 -2.259 0.829 ETKDGv3 6
5CR O 1.491 -3.444 0.545 ETKDGv3 7
5CR OXT 3.117 -1.982 1.234 ETKDGv3 8
5CR CB -0.409 -1.473 -0.113 ETKDGv3 9
5CR CG -1.431 -0.365 -0.090 ETKDGv3 10
5CR CD1 -1.459 0.569 -1.060 ETKDGv3 11
5CR CE1 -2.443 1.671 -1.003 ETKDGv3 12
5CR CZ -3.303 1.750 0.019 ETKDGv3 13
5CR CE2 -3.272 0.736 1.092 ETKDGv3 14
5CR CD2 -2.384 -0.265 1.043 ETKDGv3 15
5CR HAA1 1.760 2.462 -1.033 ETKDGv3 16
5CR HAA2 2.976 1.764 -2.173 ETKDGv3 17
5CR HAA3 3.402 1.993 -0.430 ETKDGv3 18
5CR H 1.349 0.912 1.123 ETKDGv3 19
5CR HA 0.399 -1.065 1.849 ETKDGv3 20
5CR HB1C -0.060 -1.661 -1.151 ETKDGv3 21
5CR HB2C -0.901 -2.408 0.233 ETKDGv3 22
5CR HXT 3.816 -2.714 1.275 ETKDGv3 23
5CR HD1 -0.763 0.530 -1.888 ETKDGv3 24
5CR HD2 -2.364 -1.003 1.835 ETKDGv3 25
5CR HE1 -2.462 2.415 -1.789 ETKDGv3 26
5CR HZ -4.023 2.558 0.062 ETKDGv3 27
5CR HE2 -3.966 0.806 1.919 ETKDGv3 28
#