data_59D
#
_chem_comp.id 59D
_chem_comp.name
(7R)-1-(4-fluorobenzyl)-N-{3-[(1S)-1-hydroxyethyl]phenyl}-7-methyl-5-(1H-pyrrol-2-ylcarbonyl)-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine-3-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H28 F N5 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-08-26
_chem_comp.pdbx_modified_date 2015-10-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 501.552
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 59D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5DE1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
59D N1 N1 N 0 1 Y N N N N N -19.399 16.372 9.509 -3.772 -3.093 -0.170 N1 59D 1
59D C10 C1 C 0 1 N N N N N N -24.991 10.875 6.510 -0.997 3.792 0.082 C10 59D 2
59D C13 C2 C 0 1 Y N N N N N -27.444 13.146 4.812 2.134 4.745 -1.800 C13 59D 3
59D C15 C3 C 0 1 Y N N N N N -25.417 13.183 3.552 2.583 4.896 0.550 C15 59D 4
59D C17 C4 C 0 1 Y N N N N N -23.093 11.951 7.775 -2.149 1.617 0.467 C17 59D 5
59D C20 C5 C 0 1 N N N N N N -22.841 12.957 9.917 -4.350 0.997 1.406 C20 59D 6
59D C21 C6 C 0 1 N N N N N N -20.807 12.647 8.504 -2.724 -0.831 0.762 C21 59D 7
59D C22 C7 C 0 1 Y N N N N N -21.735 11.921 7.627 -1.783 0.312 0.486 C22 59D 8
59D C24 C8 C 0 1 Y N N N N N -19.794 15.083 9.736 -4.844 -2.278 -0.456 C24 59D 9
59D C26 C9 C 0 1 Y N N N N N -17.542 15.173 9.634 -5.047 -4.187 -1.598 C26 59D 10
59D C01 C10 C 0 1 N N N N N N -15.041 9.280 2.762 7.087 -2.530 -0.409 C01 59D 11
59D C02 C11 C 0 1 N N S N N N -15.686 8.616 3.958 6.160 -2.761 0.786 C02 59D 12
59D O01 O1 O 0 1 N N N N N N -15.150 7.310 4.100 6.541 -3.964 1.458 O01 59D 13
59D C03 C12 C 0 1 Y N N N N N -17.159 8.493 3.757 4.738 -2.885 0.303 C03 59D 14
59D C04 C13 C 0 1 Y N N N N N -17.655 7.855 2.641 4.259 -4.108 -0.129 C04 59D 15
59D C05 C14 C 0 1 Y N N N N N -19.014 7.741 2.457 2.955 -4.226 -0.574 C05 59D 16
59D C06 C15 C 0 1 Y N N N N N -19.881 8.263 3.389 2.126 -3.121 -0.586 C06 59D 17
59D C07 C16 C 0 1 Y N N N N N -19.386 8.903 4.502 2.604 -1.891 -0.153 C07 59D 18
59D N01 N2 N 0 1 N N N N N N -20.299 9.416 5.435 1.767 -0.770 -0.164 N01 59D 19
59D C08 C17 C 0 1 N N N N N N -20.250 10.708 5.913 0.455 -0.906 0.113 C08 59D 20
59D O02 O2 O 0 1 N N N N N N -19.294 11.471 5.878 -0.019 -2.012 0.285 O02 59D 21
59D C09 C18 C 0 1 Y N N N N N -21.502 11.085 6.506 -0.407 0.289 0.207 C09 59D 22
59D N02 N3 N 0 1 Y N N N N N -22.650 10.624 5.996 -0.034 1.547 0.044 N02 59D 23
59D N03 N4 N 0 1 Y N N N N N -23.597 11.164 6.780 -1.045 2.332 0.191 N03 59D 24
59D C11 C19 C 0 1 Y N N N N N -25.576 11.834 5.523 0.415 4.227 -0.216 C11 59D 25
59D C12 C20 C 0 1 Y N N N N N -26.874 12.262 5.700 0.839 4.346 -1.526 C12 59D 26
59D C14 C21 C 0 1 Y N N N N N -26.712 13.602 3.741 3.007 5.021 -0.762 C14 59D 27
59D F F1 F 0 1 N N N N N N -27.260 14.466 2.870 4.273 5.410 -1.029 F 59D 28
59D C16 C22 C 0 1 Y N N N N N -24.853 12.300 4.444 1.288 4.497 0.822 C16 59D 29
59D C18 C23 C 0 1 N N R N N N -23.833 12.682 8.804 -3.552 2.108 0.712 C18 59D 30
59D C19 C24 C 0 1 N N N N N N -24.374 13.983 8.265 -3.513 3.347 1.609 C19 59D 31
59D N04 N5 N 0 1 N N N N N N -21.567 13.469 9.436 -4.094 -0.283 0.728 N04 59D 32
59D C23 C25 C 0 1 N N N N N N -21.177 14.733 9.853 -5.084 -0.938 0.091 C23 59D 33
59D O1 O3 O 0 1 N N N N N N -21.969 15.545 10.310 -6.178 -0.418 -0.031 O1 59D 34
59D C25 C26 C 0 1 Y N N N N N -18.651 14.316 9.822 -5.651 -2.950 -1.349 C25 59D 35
59D C27 C27 C 0 1 Y N N N N N -18.038 16.441 9.444 -3.904 -4.245 -0.873 C27 59D 36
59D C1 C28 C 0 1 Y N N N N N -18.026 9.016 4.690 3.913 -1.778 0.298 C1 59D 37
59D H1 H1 H 0 1 N N N N N N -20.018 17.151 9.406 -3.042 -2.878 0.432 H1 59D 38
59D H2 H2 H 0 1 N N N N N N -25.557 10.943 7.451 -1.655 4.119 -0.723 H2 59D 39
59D H3 H3 H 0 1 N N N N N N -25.071 9.855 6.106 -1.324 4.238 1.021 H3 59D 40
59D H4 H4 H 0 1 N N N N N N -28.461 13.480 4.956 2.465 4.838 -2.824 H4 59D 41
59D H5 H5 H 0 1 N N N N N N -24.846 13.544 2.709 3.263 5.111 1.360 H5 59D 42
59D H6 H6 H 0 1 N N N N N N -23.280 13.698 10.601 -4.042 0.924 2.449 H6 59D 43
59D H7 H7 H 0 1 N N N N N N -22.658 12.019 10.461 -5.415 1.228 1.356 H7 59D 44
59D H8 H8 H 0 1 N N N N N N -20.193 11.927 9.065 -2.612 -1.598 -0.004 H8 59D 45
59D H9 H9 H 0 1 N N N N N N -20.154 13.290 7.896 -2.518 -1.255 1.745 H9 59D 46
59D H10 H10 H 0 1 N N N N N N -16.501 14.885 9.639 -5.423 -4.957 -2.254 H10 59D 47
59D H11 H11 H 0 1 N N N N N N -13.957 9.362 2.928 8.115 -2.441 -0.060 H11 59D 48
59D H12 H12 H 0 1 N N N N N N -15.229 8.677 1.862 7.008 -3.371 -1.098 H12 59D 49
59D H13 H13 H 0 1 N N N N N N -15.468 10.285 2.626 6.796 -1.613 -0.922 H13 59D 50
59D H14 H14 H 0 1 N N N N N N -15.486 9.216 4.858 6.239 -1.920 1.475 H14 59D 51
59D H15 H15 H 0 1 N N N N N N -15.549 6.883 4.849 7.447 -3.955 1.796 H15 59D 52
59D H16 H16 H 0 1 N N N N N N -16.976 7.444 1.909 4.905 -4.973 -0.120 H16 59D 53
59D H17 H17 H 0 1 N N N N N N -19.400 7.242 1.581 2.584 -5.182 -0.911 H17 59D 54
59D H18 H18 H 0 1 N N N N N N -20.948 8.171 3.247 1.108 -3.213 -0.933 H18 59D 55
59D H19 H19 H 0 1 N N N N N N -21.023 8.813 5.771 2.131 0.104 -0.372 H19 59D 56
59D H20 H20 H 0 1 N N N N N N -27.448 11.901 6.541 0.159 4.128 -2.336 H20 59D 57
59D H21 H21 H 0 1 N N N N N N -23.835 11.969 4.298 0.957 4.400 1.845 H21 59D 58
59D H22 H22 H 0 1 N N N N N N -24.660 12.068 9.190 -4.023 2.357 -0.239 H22 59D 59
59D H23 H23 H 0 1 N N N N N N -24.924 14.509 9.059 -3.084 4.182 1.055 H23 59D 60
59D H24 H24 H 0 1 N N N N N N -23.540 14.611 7.919 -4.525 3.601 1.922 H24 59D 61
59D H25 H25 H 0 1 N N N N N N -25.052 13.777 7.424 -2.901 3.141 2.487 H25 59D 62
59D H26 H26 H 0 1 N N N N N N -18.610 13.252 10.001 -6.575 -2.590 -1.776 H26 59D 63
59D H27 H27 H 0 1 N N N N N N -17.454 17.333 9.274 -3.214 -5.075 -0.853 H27 59D 64
59D H28 H28 H 0 1 N N N N N N -17.641 9.514 5.568 4.286 -0.824 0.640 H28 59D 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
59D C05 C04 DOUB Y N 1
59D C05 C06 SING Y N 2
59D C04 C03 SING Y N 3
59D C01 C02 SING N N 4
59D F C14 SING N N 5
59D C06 C07 DOUB Y N 6
59D C15 C14 DOUB Y N 7
59D C15 C16 SING Y N 8
59D C14 C13 SING Y N 9
59D C03 C02 SING N N 10
59D C03 C1 DOUB Y N 11
59D C02 O01 SING N N 12
59D C16 C11 DOUB Y N 13
59D C07 C1 SING Y N 14
59D C07 N01 SING N N 15
59D C13 C12 DOUB Y N 16
59D N01 C08 SING N N 17
59D C11 C12 SING Y N 18
59D C11 C10 SING N N 19
59D O02 C08 DOUB N N 20
59D C08 C09 SING N N 21
59D N02 C09 DOUB Y N 22
59D N02 N03 SING Y N 23
59D C09 C22 SING Y N 24
59D C10 N03 SING N N 25
59D N03 C17 SING Y N 26
59D C22 C17 DOUB Y N 27
59D C22 C21 SING N N 28
59D C17 C18 SING N N 29
59D C19 C18 SING N N 30
59D C21 N04 SING N N 31
59D C18 C20 SING N N 32
59D N04 C23 SING N N 33
59D N04 C20 SING N N 34
59D C27 N1 SING Y N 35
59D C27 C26 DOUB Y N 36
59D N1 C24 SING Y N 37
59D C26 C25 SING Y N 38
59D C24 C25 DOUB Y N 39
59D C24 C23 SING N N 40
59D C23 O1 DOUB N N 41
59D N1 H1 SING N N 42
59D C10 H2 SING N N 43
59D C10 H3 SING N N 44
59D C13 H4 SING N N 45
59D C15 H5 SING N N 46
59D C20 H6 SING N N 47
59D C20 H7 SING N N 48
59D C21 H8 SING N N 49
59D C21 H9 SING N N 50
59D C26 H10 SING N N 51
59D C01 H11 SING N N 52
59D C01 H12 SING N N 53
59D C01 H13 SING N N 54
59D C02 H14 SING N N 55
59D O01 H15 SING N N 56
59D C04 H16 SING N N 57
59D C05 H17 SING N N 58
59D C06 H18 SING N N 59
59D N01 H19 SING N N 60
59D C12 H20 SING N N 61
59D C16 H21 SING N N 62
59D C18 H22 SING N N 63
59D C19 H23 SING N N 64
59D C19 H24 SING N N 65
59D C19 H25 SING N N 66
59D C25 H26 SING N N 67
59D C27 H27 SING N N 68
59D C1 H28 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
59D SMILES ACDLabs 12.01 n1c(ccc1)C(N2CC(c5c(C2)c(C(Nc3cccc(C(C)O)c3)=O)nn5Cc4ccc(cc4)F)C)=O
59D InChI InChI 1.03 InChI=1S/C28H28FN5O3/c1-17-14-33(28(37)24-7-4-12-30-24)16-23-25(27(36)31-22-6-3-5-20(13-22)18(2)35)32-34(26(17)23)15-19-8-10-21(29)11-9-19/h3-13,17-18,30,35H,14-16H2,1-2H3,(H,31,36)/t17-,18+/m1/s1
59D InChIKey InChI 1.03 IVFDDVKCCBDPQZ-MSOLQXFVSA-N
59D SMILES_CANONICAL CACTVS 3.385 C[C@H](O)c1cccc(NC(=O)c2nn(Cc3ccc(F)cc3)c4[C@H](C)CN(Cc24)C(=O)c5[nH]ccc5)c1
59D SMILES CACTVS 3.385 C[CH](O)c1cccc(NC(=O)c2nn(Cc3ccc(F)cc3)c4[CH](C)CN(Cc24)C(=O)c5[nH]ccc5)c1
59D SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C[C@@H]1CN(Cc2c1n(nc2C(=O)Nc3cccc(c3)[C@H](C)O)Cc4ccc(cc4)F)C(=O)c5ccc[nH]5
59D SMILES "OpenEye OEToolkits" 1.9.2 CC1CN(Cc2c1n(nc2C(=O)Nc3cccc(c3)C(C)O)Cc4ccc(cc4)F)C(=O)c5ccc[nH]5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
59D "SYSTEMATIC NAME" ACDLabs 12.01 (7R)-1-(4-fluorobenzyl)-N-{3-[(1S)-1-hydroxyethyl]phenyl}-7-methyl-5-(1H-pyrrol-2-ylcarbonyl)-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine-3-carboxamide
59D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (7R)-1-[(4-fluorophenyl)methyl]-7-methyl-N-[3-[(1S)-1-oxidanylethyl]phenyl]-5-(1H-pyrrol-2-ylcarbonyl)-6,7-dihydro-4H-pyrazolo[4,3-c]pyridine-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
59D 'Create component' 2015-08-26 RCSB
59D 'Initial release' 2015-10-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
59D N1 N 5.217 -2.418 1
59D C10 C 12.456 -4.309 2
59D C13 C 16.393 -3.812 3
59D C15 C 15.857 -6.354 4
59D C17 C 10.570 -2.426 5
59D C20 C 7.972 -2.426 6
59D C21 C 9.271 -0.176 7
59D C22 C 10.570 -0.926 8
59D C24 C 5.374 -0.926 9
59D C26 C 3.000 -1.431 10
59D C01 C 18.257 6.162 11
59D C02 C 17.791 4.736 12
59D O01 O 18.792 3.620 13
59D C03 C 16.323 4.427 14
59D C04 C 15.321 5.543 15
59D C05 C 13.853 5.234 16
59D C06 C 13.387 3.808 17
59D C07 C 14.389 2.692 18
59D N01 N 13.923 1.266 19
59D C08 C 12.456 0.957 20
59D O02 O 11.454 2.073 21
59D C09 C 11.989 -0.469 22
59D N02 N 12.865 -1.676 23
59D N03 N 11.989 -2.883 24
59D C11 C 13.923 -4.619 25
59D C12 C 14.925 -3.502 26
59D C14 C 16.859 -5.237 27
59D F F 18.327 -5.546 28
59D C16 C 14.389 -6.044 29
59D C18 C 9.271 -3.176 30
59D C19 C 9.271 -4.676 31
59D N04 N 7.972 -0.926 32
59D C23 C 6.673 -0.176 33
59D O1 O 6.673 1.324 34
59D C25 C 4.004 -0.316 35
59D C27 C 3.750 -2.730 36
59D C1 C 15.857 3.001 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
59D C05 C04 SINGLE NONE 1
59D C05 C06 DOUBLE NONE 2
59D C04 C03 DOUBLE NONE 3
59D C02 C01 SINGLE BEGINDASH 4
59D F C14 SINGLE NONE 5
59D C06 C07 SINGLE NONE 6
59D C15 C14 SINGLE NONE 7
59D C15 C16 DOUBLE NONE 8
59D C14 C13 DOUBLE NONE 9
59D C03 C02 SINGLE NONE 10
59D C03 C1 SINGLE NONE 11
59D C02 O01 SINGLE NONE 12
59D C16 C11 SINGLE NONE 13
59D C07 C1 DOUBLE NONE 14
59D C07 N01 SINGLE NONE 15
59D C13 C12 SINGLE NONE 16
59D N01 C08 SINGLE NONE 17
59D C11 C12 DOUBLE NONE 18
59D C11 C10 SINGLE NONE 19
59D O02 C08 DOUBLE NONE 20
59D C08 C09 SINGLE NONE 21
59D N02 C09 DOUBLE NONE 22
59D N02 N03 SINGLE NONE 23
59D C09 C22 SINGLE NONE 24
59D C10 N03 SINGLE NONE 25
59D N03 C17 SINGLE NONE 26
59D C22 C17 DOUBLE NONE 27
59D C22 C21 SINGLE NONE 28
59D C17 C18 SINGLE NONE 29
59D C18 C19 SINGLE BEGINDASH 30
59D C21 N04 SINGLE NONE 31
59D C18 C20 SINGLE NONE 32
59D N04 C23 SINGLE NONE 33
59D N04 C20 SINGLE NONE 34
59D C27 N1 SINGLE NONE 35
59D C27 C26 DOUBLE NONE 36
59D N1 C24 SINGLE NONE 37
59D C26 C25 SINGLE NONE 38
59D C24 C25 DOUBLE NONE 39
59D C24 C23 SINGLE NONE 40
59D C23 O1 DOUBLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
59D MurckoScaffold S1 scaffold 'O=C(Nc1ccccc1)c1nn(Cc2ccccc2)c2c1CN(C(=O)c1ccc[nH]1)CC2' InChI=1S/C25H23N5O2/c31-24(27-19-10-5-2-6-11-19)23-20-17-29(25(32)21-12-7-14-26-21)15-13-22(20)30(28-23)16-18-8-3-1-4-9-18/h1-12,14,26H,13,15-17H2,(H,27,31) JDPMJQHDWOAUQW-UHFFFAOYSA-N
59D amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
59D phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
59D pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
59D pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
59D Z383325512 F5 fragment 'CC(=O)NCc1cn[nH]c1' InChI=1S/C6H9N3O/c1-5(10)7-2-6-3-8-9-4-6/h3-4H,2H2,1H3,(H,7,10)(H,8,9) VFAFDDVJGKOBTH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
59D N1 S1 1
59D C10 S1 1
59D C13 S1 1
59D C15 S1 1
59D C17 S1 1
59D C20 S1 1
59D C21 S1 1
59D C22 S1 1
59D C24 S1 1
59D C26 S1 1
59D C03 S1 1
59D C04 S1 1
59D C05 S1 1
59D C06 S1 1
59D C07 S1 1
59D N01 S1 1
59D C08 S1 1
59D O02 S1 1
59D C09 S1 1
59D N02 S1 1
59D N03 S1 1
59D C11 S1 1
59D C12 S1 1
59D C14 S1 1
59D C16 S1 1
59D C18 S1 1
59D N04 S1 1
59D C23 S1 1
59D O1 S1 1
59D C25 S1 1
59D C27 S1 1
59D C1 S1 1
59D N01 F1 1
59D C08 F1 1
59D O02 F1 1
59D C09 F1 1
59D N04 F1 2
59D C23 F1 2
59D O1 F1 2
59D C24 F1 2
59D C13 F2 1
59D C14 F2 1
59D C15 F2 1
59D C16 F2 1
59D C11 F2 1
59D C12 F2 1
59D C03 F2 2
59D C04 F2 2
59D C05 F2 2
59D C06 F2 2
59D C07 F2 2
59D C1 F2 2
59D C17 F3 1
59D C22 F3 1
59D C09 F3 1
59D N02 F3 1
59D N03 F3 1
59D C24 F4 1
59D C25 F4 1
59D C26 F4 1
59D C27 F4 1
59D N1 F4 1
59D C24 F5 1
59D C23 F5 1
59D O1 F5 1
59D N04 F5 1
59D C21 F5 1
59D C22 F5 1
59D C09 F5 1
59D N02 F5 1
59D N03 F5 1
59D C17 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 59D
_pdbe_chem_comp_rdkit_properties.exactmw 501.218
_pdbe_chem_comp_rdkit_properties.amw 501.562
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 65
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.832
_pdbe_chem_comp_rdkit_properties.tpsa 103.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.755
_pdbe_chem_comp_rdkit_properties.CrippenMR 134.286
_pdbe_chem_comp_rdkit_properties.chi0v 17.839
_pdbe_chem_comp_rdkit_properties.chi1v 9.737
_pdbe_chem_comp_rdkit_properties.chi2v 4.447
_pdbe_chem_comp_rdkit_properties.chi3v 4.447
_pdbe_chem_comp_rdkit_properties.chi4v 2.914
_pdbe_chem_comp_rdkit_properties.chi0n 45.839
_pdbe_chem_comp_rdkit_properties.chi1n 23.540
_pdbe_chem_comp_rdkit_properties.chi2n 4.447
_pdbe_chem_comp_rdkit_properties.chi3n 4.447
_pdbe_chem_comp_rdkit_properties.chi4n 2.914
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.240
_pdbe_chem_comp_rdkit_properties.kappa1 7.879
_pdbe_chem_comp_rdkit_properties.kappa2 10.021
_pdbe_chem_comp_rdkit_properties.kappa3 5.033
_pdbe_chem_comp_rdkit_properties.Phi 2.134
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
59D UniChem ZINC ZINC000263620574
59D UniChem SureChEMBL SCHEMBL20067448
59D UniChem PubChem 91864709
59D UniChem Nikkaji J3.477.282G
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
59D N1 3.955 3.524 2.339 ETKDGv3 1
59D C10 1.806 -3.346 1.200 ETKDGv3 2
59D C13 4.142 -4.296 -1.705 ETKDGv3 3
59D C15 1.846 -4.881 -2.284 ETKDGv3 4
59D C17 1.644 -0.806 0.785 ETKDGv3 5
59D C20 3.396 0.918 0.397 ETKDGv3 6
59D C21 0.940 1.434 -0.058 ETKDGv3 7
59D C22 0.719 -0.008 0.289 ETKDGv3 8
59D C24 3.564 3.977 1.048 ETKDGv3 9
59D C26 4.998 5.476 1.910 ETKDGv3 10
59D C01 -6.262 2.901 -1.049 ETKDGv3 11
59D C02 -6.794 1.704 -0.257 ETKDGv3 12
59D O01 -6.488 1.855 1.105 ETKDGv3 13
59D C03 -6.178 0.425 -0.773 ETKDGv3 14
59D C04 -6.880 -0.403 -1.568 ETKDGv3 15
59D C05 -6.262 -1.639 -2.086 ETKDGv3 16
59D C06 -4.992 -1.933 -1.788 ETKDGv3 17
59D C07 -4.189 -1.016 -0.946 ETKDGv3 18
59D N01 -2.833 -1.370 -0.626 ETKDGv3 19
59D C08 -1.769 -0.417 -0.459 ETKDGv3 20
59D O02 -1.923 0.778 -0.829 ETKDGv3 21
59D C09 -0.477 -0.840 0.107 ETKDGv3 22
59D N02 -0.236 -2.048 0.508 ETKDGv3 23
59D N03 1.081 -2.099 0.981 ETKDGv3 24
59D C11 2.335 -3.872 -0.107 ETKDGv3 25
59D C12 3.647 -3.805 -0.402 ETKDGv3 26
59D C14 3.288 -4.807 -2.600 ETKDGv3 27
59D F 3.742 -5.256 -3.796 ETKDGv3 28
59D C16 1.394 -4.440 -1.104 ETKDGv3 29
59D C18 3.009 -0.344 1.201 ETKDGv3 30
59D C19 3.027 -0.079 2.709 ETKDGv3 31
59D N04 2.285 1.891 0.339 ETKDGv3 32
59D C23 2.587 3.291 0.180 ETKDGv3 33
59D O1 1.998 3.956 -0.717 ETKDGv3 34
59D C25 4.156 5.132 0.766 ETKDGv3 35
59D C27 4.853 4.518 2.813 ETKDGv3 36
59D C1 -4.765 0.095 -0.449 ETKDGv3 37
59D H1 3.571 2.721 2.880 ETKDGv3 38
59D H2 1.117 -4.097 1.643 ETKDGv3 39
59D H3 2.624 -3.183 1.934 ETKDGv3 40
59D H4 5.199 -4.240 -1.932 ETKDGv3 41
59D H5 1.157 -5.294 -3.009 ETKDGv3 42
59D H6 3.649 0.614 -0.642 ETKDGv3 43
59D H7 4.313 1.371 0.829 ETKDGv3 44
59D H8 0.814 1.560 -1.155 ETKDGv3 45
59D H9 0.174 2.045 0.467 ETKDGv3 46
59D H10 5.616 6.358 2.017 ETKDGv3 47
59D H11 -6.491 2.778 -2.129 ETKDGv3 48
59D H12 -6.746 3.835 -0.693 ETKDGv3 49
59D H13 -5.163 2.998 -0.920 ETKDGv3 50
59D H14 -7.903 1.666 -0.379 ETKDGv3 51
59D H15 -7.100 2.550 1.464 ETKDGv3 52
59D H16 -7.904 -0.178 -1.839 ETKDGv3 53
59D H17 -6.842 -2.308 -2.710 ETKDGv3 54
59D H18 -4.547 -2.842 -2.173 ETKDGv3 55
59D H19 -2.590 -2.387 -0.616 ETKDGv3 56
59D H20 4.356 -3.395 0.305 ETKDGv3 57
59D H21 0.336 -4.499 -0.880 ETKDGv3 58
59D H22 3.750 -1.139 0.977 ETKDGv3 59
59D H23 4.036 0.259 3.027 ETKDGv3 60
59D H24 2.278 0.694 2.982 ETKDGv3 61
59D H25 2.789 -1.012 3.263 ETKDGv3 62
59D H26 4.028 5.713 -0.138 ETKDGv3 63
59D H27 5.332 4.496 3.782 ETKDGv3 64
59D H28 -4.214 0.749 0.214 ETKDGv3 65
#