data_55J
#
_chem_comp.id 55J
_chem_comp.name
1-methyl-5-({2-[5-(trifluoromethyl)-1H-imidazol-2-yl]pyridin-4-yl}oxy)-N-[4-(trifluoromethyl)phenyl]-1H-benzimidazol-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H16 F6 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-07-28
_chem_comp.pdbx_modified_date 2015-09-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 518.414
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 55J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5CT7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
55J C1 C1 C 0 1 Y N N N N N -19.280 9.437 -8.935 -0.833 -2.512 0.186 C1 55J 1
55J C2 C2 C 0 1 Y N N N N N -19.907 8.738 -9.971 -0.817 -3.356 1.309 C2 55J 2
55J C3 C3 C 0 1 Y N N N N N -19.674 9.025 -11.312 0.162 -4.330 1.432 C3 55J 3
55J O1 O1 O 0 1 N N N N N N -17.140 11.635 -10.927 2.064 -3.785 -1.624 O1 55J 4
55J C11 C4 C 0 1 Y N N N N N -16.323 13.774 -11.466 2.975 -1.687 -0.933 C11 55J 5
55J C12 C5 C 0 1 Y N N N N N -15.402 16.035 -11.922 3.938 0.495 -0.239 C12 55J 6
55J C13 C6 C 0 1 Y N N N N N -20.608 8.032 -7.992 -2.511 -1.935 1.454 C13 55J 7
55J C14 C7 C 0 1 N N N N N N -21.705 6.935 -10.000 -2.287 -3.558 3.377 C14 55J 8
55J C15 C8 C 0 1 Y N N N N N -21.726 7.565 -5.815 -4.252 -0.308 1.117 C15 55J 9
55J C16 C9 C 0 1 Y N N N N N -22.276 6.551 -5.042 -4.984 0.717 1.702 C16 55J 10
55J C17 C10 C 0 1 Y N N N N N -22.736 6.821 -3.765 -5.595 1.668 0.907 C17 55J 11
55J C18 C11 C 0 1 Y N N N N N -22.658 8.099 -3.232 -5.478 1.599 -0.469 C18 55J 12
55J C19 C12 C 0 1 Y N N N N N -22.104 9.109 -4.010 -4.750 0.580 -1.054 C19 55J 13
55J C20 C13 C 0 1 Y N N N N N -21.644 8.851 -5.289 -4.137 -0.374 -0.266 C20 55J 14
55J C21 C14 C 0 1 Y N N N N N -14.330 17.919 -12.342 3.459 1.853 1.373 C21 55J 15
55J C22 C15 C 0 1 Y N N N N N -13.477 16.865 -12.271 4.494 2.400 0.701 C22 55J 16
55J C23 C16 C 0 1 N N N N N N -23.233 8.390 -1.889 -6.147 2.638 -1.332 C23 55J 17
55J C24 C17 C 0 1 N N N N N N -12.012 16.855 -12.450 5.177 3.706 1.016 C24 55J 18
55J C4 C18 C 0 1 Y N N N N N -18.785 10.044 -11.609 1.121 -4.470 0.451 C4 55J 19
55J C5 C19 C 0 1 Y N N N N N -18.134 10.729 -10.581 1.113 -3.638 -0.664 C5 55J 20
55J C6 C20 C 0 1 Y N N N N N -18.367 10.449 -9.236 0.140 -2.667 -0.805 C6 55J 21
55J C7 C21 C 0 1 Y N N N N N -17.408 12.990 -11.106 2.959 -2.779 -1.794 C7 55J 22
55J C8 C22 C 0 1 Y N N N N N -18.652 13.572 -10.922 3.886 -2.816 -2.835 C8 55J 23
55J C9 C23 C 0 1 Y N N N N N -18.754 14.936 -11.121 4.783 -1.776 -2.979 C9 55J 24
55J N1 N1 N 0 1 Y N N N N N -17.724 15.725 -11.474 4.775 -0.753 -2.148 N1 55J 25
55J C10 C24 C 0 1 Y N N N N N -16.526 15.138 -11.628 3.907 -0.674 -1.145 C10 55J 26
55J N2 N2 N 0 1 Y N N N N N -19.744 8.984 -7.695 -1.888 -1.669 0.333 N2 55J 27
55J N3 N3 N 0 1 Y N N N N N -20.762 7.840 -9.345 -1.891 -2.968 2.096 N3 55J 28
55J N4 N4 N 0 1 N N N N N N -21.290 7.244 -7.119 -3.628 -1.269 1.918 N4 55J 29
55J N5 N5 N 0 1 Y N N N N N -15.576 17.424 -12.129 3.140 0.696 0.786 N5 55J 30
55J N6 N6 N 0 1 Y N N N N N -14.125 15.686 -12.008 4.805 1.545 -0.320 N6 55J 31
55J F1 F1 F 0 1 N N N N N N -23.082 9.649 -1.475 -7.299 3.105 -0.692 F1 55J 32
55J F2 F2 F 0 1 N N N N N N -24.510 8.144 -1.853 -5.266 3.704 -1.545 F2 55J 33
55J F3 F3 F 0 1 N N N N N N -22.719 7.659 -0.942 -6.494 2.068 -2.562 F3 55J 34
55J F4 F4 F 0 1 N N N N N N -11.660 16.349 -13.615 6.519 3.636 0.623 F4 55J 35
55J F5 F5 F 0 1 N N N N N N -11.483 18.067 -12.355 4.542 4.743 0.325 F5 55J 36
55J F6 F6 F 0 1 N N N N N N -11.413 16.103 -11.541 5.106 3.949 2.391 F6 55J 37
55J H1 H1 H 0 1 N N N N N N -20.170 8.471 -12.095 0.174 -4.978 2.296 H1 55J 38
55J H2 H2 H 0 1 N N N N N N -15.347 13.336 -11.616 2.272 -1.623 -0.116 H2 55J 39
55J H3 H3 H 0 1 N N N N N N -22.241 6.349 -9.239 -1.782 -3.036 4.190 H3 55J 40
55J H4 H4 H 0 1 N N N N N N -22.428 7.521 -10.587 -3.366 -3.466 3.502 H4 55J 41
55J H5 H5 H 0 1 N N N N N N -21.156 6.254 -10.668 -2.008 -4.612 3.394 H5 55J 42
55J H6 H6 H 0 1 N N N N N N -22.345 5.549 -5.438 -5.076 0.770 2.776 H6 55J 43
55J H7 H7 H 0 1 N N N N N N -23.162 6.024 -3.174 -6.164 2.465 1.362 H7 55J 44
55J H8 H8 H 0 1 N N N N N N -22.032 10.110 -3.610 -4.661 0.529 -2.130 H8 55J 45
55J H9 H9 H 0 1 N N N N N N -21.220 9.649 -5.881 -3.568 -1.170 -0.724 H9 55J 46
55J H10 H10 H 0 1 N N N N N N -14.068 18.950 -12.531 2.972 2.278 2.238 H10 55J 47
55J H11 H11 H 0 1 N N N N N N -18.595 10.310 -12.638 1.883 -5.229 0.549 H11 55J 48
55J H12 H12 H 0 1 N N N N N N -17.860 10.995 -8.455 0.135 -2.026 -1.674 H12 55J 49
55J H13 H13 H 0 1 N N N N N N -19.510 12.982 -10.634 3.902 -3.649 -3.522 H13 55J 50
55J H14 H14 H 0 1 N N N N N N -19.721 15.397 -10.984 5.502 -1.802 -3.784 H14 55J 51
55J H15 H15 H 0 1 N N N N N N -21.510 6.323 -7.440 -3.980 -1.468 2.800 H15 55J 52
55J H17 H17 H 0 1 N N N N N N -13.727 14.774 -11.905 5.507 1.664 -0.978 H17 55J 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
55J F4 C24 SING N N 1
55J C24 F5 SING N N 2
55J C24 C22 SING N N 3
55J C24 F6 SING N N 4
55J C21 C22 DOUB Y N 5
55J C21 N5 SING Y N 6
55J C22 N6 SING Y N 7
55J N5 C12 DOUB Y N 8
55J N6 C12 SING Y N 9
55J C12 C10 SING N N 10
55J C10 N1 DOUB Y N 11
55J C10 C11 SING Y N 12
55J C4 C3 DOUB Y N 13
55J C4 C5 SING Y N 14
55J N1 C9 SING Y N 15
55J C11 C7 DOUB Y N 16
55J C3 C2 SING Y N 17
55J C9 C8 DOUB Y N 18
55J C7 O1 SING N N 19
55J C7 C8 SING Y N 20
55J O1 C5 SING N N 21
55J C5 C6 DOUB Y N 22
55J C14 N3 SING N N 23
55J C2 N3 SING Y N 24
55J C2 C1 DOUB Y N 25
55J N3 C13 SING Y N 26
55J C6 C1 SING Y N 27
55J C1 N2 SING Y N 28
55J C13 N2 DOUB Y N 29
55J C13 N4 SING N N 30
55J N4 C15 SING N N 31
55J C15 C20 DOUB Y N 32
55J C15 C16 SING Y N 33
55J C20 C19 SING Y N 34
55J C16 C17 DOUB Y N 35
55J C19 C18 DOUB Y N 36
55J C17 C18 SING Y N 37
55J C18 C23 SING N N 38
55J C23 F2 SING N N 39
55J C23 F1 SING N N 40
55J C23 F3 SING N N 41
55J C3 H1 SING N N 42
55J C11 H2 SING N N 43
55J C14 H3 SING N N 44
55J C14 H4 SING N N 45
55J C14 H5 SING N N 46
55J C16 H6 SING N N 47
55J C17 H7 SING N N 48
55J C19 H8 SING N N 49
55J C20 H9 SING N N 50
55J C21 H10 SING N N 51
55J C4 H11 SING N N 52
55J C6 H12 SING N N 53
55J C8 H13 SING N N 54
55J C9 H14 SING N N 55
55J N4 H15 SING N N 56
55J N6 H17 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
55J SMILES ACDLabs 12.01 c25nc(Nc1ccc(cc1)C(F)(F)F)n(c2ccc(Oc4cc(c3ncc(n3)C(F)(F)F)ncc4)c5)C
55J InChI InChI 1.03 InChI=1S/C24H16F6N6O/c1-36-19-7-6-15(10-17(19)34-22(36)33-14-4-2-13(3-5-14)23(25,26)27)37-16-8-9-31-18(11-16)21-32-12-20(35-21)24(28,29)30/h2-12H,1H3,(H,32,35)(H,33,34)
55J InChIKey InChI 1.03 YABJJWZLRMPFSI-UHFFFAOYSA-N
55J SMILES_CANONICAL CACTVS 3.385 Cn1c(Nc2ccc(cc2)C(F)(F)F)nc3cc(Oc4ccnc(c4)c5[nH]c(cn5)C(F)(F)F)ccc13
55J SMILES CACTVS 3.385 Cn1c(Nc2ccc(cc2)C(F)(F)F)nc3cc(Oc4ccnc(c4)c5[nH]c(cn5)C(F)(F)F)ccc13
55J SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 Cn1c2ccc(cc2nc1Nc3ccc(cc3)C(F)(F)F)Oc4ccnc(c4)c5[nH]c(cn5)C(F)(F)F
55J SMILES "OpenEye OEToolkits" 1.9.2 Cn1c2ccc(cc2nc1Nc3ccc(cc3)C(F)(F)F)Oc4ccnc(c4)c5[nH]c(cn5)C(F)(F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
55J "SYSTEMATIC NAME" ACDLabs 12.01 1-methyl-5-({2-[5-(trifluoromethyl)-1H-imidazol-2-yl]pyridin-4-yl}oxy)-N-[4-(trifluoromethyl)phenyl]-1H-benzimidazol-2-amine
55J "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 1-methyl-5-[2-[5-(trifluoromethyl)-1H-imidazol-2-yl]pyridin-4-yl]oxy-N-[4-(trifluoromethyl)phenyl]benzimidazol-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
55J 'Create component' 2015-07-28 RCSB
55J 'Initial release' 2015-09-09 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 55J
_pdbe_chem_comp_drugbank_details.drugbank_id DB05984
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name RAF-265
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 927880-90-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'CHIR-265 binds and inhibits Raf kinases, which may result in a reduction of tumor cell growth and proliferation, and tumor cell death. In addition, this agent inhibits vascular endothelial growth factor receptor type 2 (VEGFR-2), thereby disrupting tumor angiogenesis. Raf kinases are critical enzymes in the Ras/Raf/MEK/ERK signaling pathway and are frequently upregulated in neoplasms.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
55J DB05984 'Vascular endothelial growth factor receptor 2' Humans P35968 unknown 1
55J DB05984 'Serine/threonine-protein kinase B-raf' Humans P15056 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
55J C1 C 17.451 1.181 1
55J C2 C 17.451 2.681 2
55J C3 C 16.152 3.431 3
55J O1 O 13.554 0.431 4
55J C11 C 10.956 0.431 5
55J C12 C 8.357 0.431 6
55J C13 C 19.746 1.931 7
55J C14 C 19.336 4.564 8
55J C15 C 21.996 0.632 9
55J C16 C 21.246 -0.667 10
55J C17 C 21.996 -1.966 11
55J C18 C 23.496 -1.966 12
55J C19 C 24.245 -0.667 13
55J C20 C 23.496 0.632 14
55J C21 C 6.734 -1.373 15
55J C22 C 5.984 -0.073 16
55J C23 C 24.245 -3.265 17
55J C24 C 4.492 0.083 18
55J C4 C 14.853 2.681 19
55J C5 C 14.853 1.181 20
55J C6 C 16.152 0.431 21
55J C7 C 12.255 1.181 22
55J C8 C 12.255 2.681 23
55J C9 C 10.956 3.431 24
55J N1 N 9.657 2.681 25
55J C10 C 9.657 1.181 26
55J N2 N 18.870 0.724 27
55J N3 N 18.870 3.138 28
55J N4 N 21.246 1.931 29
55J N5 N 8.201 -1.061 30
55J N6 N 6.987 1.041 31
55J F1 F 24.995 -4.564 32
55J F2 F 25.545 -2.515 33
55J F3 F 22.947 -4.015 34
55J F4 F 3.000 0.240 35
55J F5 F 4.335 -1.409 36
55J F6 F 4.649 1.575 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
55J F4 C24 SINGLE NONE 1
55J C24 F5 SINGLE NONE 2
55J C24 C22 SINGLE NONE 3
55J C24 F6 SINGLE NONE 4
55J C21 C22 DOUBLE NONE 5
55J C21 N5 SINGLE NONE 6
55J C22 N6 SINGLE NONE 7
55J N5 C12 DOUBLE NONE 8
55J N6 C12 SINGLE NONE 9
55J C12 C10 SINGLE NONE 10
55J C10 N1 SINGLE NONE 11
55J C10 C11 DOUBLE NONE 12
55J C4 C3 DOUBLE NONE 13
55J C4 C5 SINGLE NONE 14
55J N1 C9 DOUBLE NONE 15
55J C11 C7 SINGLE NONE 16
55J C3 C2 SINGLE NONE 17
55J C9 C8 SINGLE NONE 18
55J C7 O1 SINGLE NONE 19
55J C7 C8 DOUBLE NONE 20
55J O1 C5 SINGLE NONE 21
55J C5 C6 DOUBLE NONE 22
55J C14 N3 SINGLE NONE 23
55J C2 N3 SINGLE NONE 24
55J C2 C1 DOUBLE NONE 25
55J N3 C13 SINGLE NONE 26
55J C6 C1 SINGLE NONE 27
55J C1 N2 SINGLE NONE 28
55J C13 N2 DOUBLE NONE 29
55J C13 N4 SINGLE NONE 30
55J N4 C15 SINGLE NONE 31
55J C15 C20 SINGLE NONE 32
55J C15 C16 DOUBLE NONE 33
55J C20 C19 DOUBLE NONE 34
55J C16 C17 SINGLE NONE 35
55J C19 C18 SINGLE NONE 36
55J C17 C18 DOUBLE NONE 37
55J C18 C23 SINGLE NONE 38
55J C23 F2 SINGLE NONE 39
55J C23 F1 SINGLE NONE 40
55J C23 F3 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
55J MurckoScaffold S1 scaffold 'c1ccc(Nc2nc3cc(Oc4ccnc(-c5ncc[nH]5)c4)ccc3[nH]2)cc1' InChI=1S/C21H16N6O/c1-2-4-14(5-3-1)25-21-26-17-7-6-15(12-18(17)27-21)28-16-8-9-22-19(13-16)20-23-10-11-24-20/h1-13H,(H,23,24)(H2,25,26,27) MIDCGYCSIGZQAQ-UHFFFAOYSA-N
55J benzimidazole F1 fragment 'c1ccc2[nH]cnc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)8-5-9-7/h1-5H,(H,8,9) HYZJCKYKOHLVJF-UHFFFAOYSA-N
55J imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
55J phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
55J pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
55J C1 S1 1
55J C2 S1 1
55J C3 S1 1
55J O1 S1 1
55J C11 S1 1
55J C12 S1 1
55J C13 S1 1
55J C15 S1 1
55J C16 S1 1
55J C17 S1 1
55J C18 S1 1
55J C19 S1 1
55J C20 S1 1
55J C21 S1 1
55J C22 S1 1
55J C4 S1 1
55J C5 S1 1
55J C6 S1 1
55J C7 S1 1
55J C8 S1 1
55J C9 S1 1
55J N1 S1 1
55J C10 S1 1
55J N2 S1 1
55J N3 S1 1
55J N4 S1 1
55J N5 S1 1
55J N6 S1 1
55J C1 F1 1
55J N2 F1 1
55J C13 F1 1
55J N3 F1 1
55J C2 F1 1
55J C3 F1 1
55J C4 F1 1
55J C5 F1 1
55J C6 F1 1
55J C1 F2 1
55J C2 F2 1
55J N3 F2 1
55J C13 F2 1
55J N2 F2 1
55J C21 F2 2
55J C22 F2 2
55J N6 F2 2
55J C12 F2 2
55J N5 F2 2
55J C1 F3 1
55J C2 F3 1
55J C3 F3 1
55J C4 F3 1
55J C5 F3 1
55J C6 F3 1
55J C15 F3 2
55J C20 F3 2
55J C19 F3 2
55J C18 F3 2
55J C17 F3 2
55J C16 F3 2
55J C9 F4 1
55J C8 F4 1
55J C7 F4 1
55J C11 F4 1
55J C10 F4 1
55J N1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 55J
_pdbe_chem_comp_rdkit_properties.exactmw 518.129
_pdbe_chem_comp_rdkit_properties.amw 518.421
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 53
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 226.919
_pdbe_chem_comp_rdkit_properties.tpsa 80.650
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.328
_pdbe_chem_comp_rdkit_properties.CrippenMR 115.407
_pdbe_chem_comp_rdkit_properties.chi0v 17.359
_pdbe_chem_comp_rdkit_properties.chi1v 9.449
_pdbe_chem_comp_rdkit_properties.chi2v 4.232
_pdbe_chem_comp_rdkit_properties.chi3v 4.232
_pdbe_chem_comp_rdkit_properties.chi4v 2.650
_pdbe_chem_comp_rdkit_properties.chi0n 33.359
_pdbe_chem_comp_rdkit_properties.chi1n 17.343
_pdbe_chem_comp_rdkit_properties.chi2n 4.232
_pdbe_chem_comp_rdkit_properties.chi3n 4.232
_pdbe_chem_comp_rdkit_properties.chi4n 2.650
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.550
_pdbe_chem_comp_rdkit_properties.kappa1 11.667
_pdbe_chem_comp_rdkit_properties.kappa2 8.835
_pdbe_chem_comp_rdkit_properties.kappa3 5.056
_pdbe_chem_comp_rdkit_properties.Phi 2.786
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
55J UniChem DrugBank DB05984
55J UniChem 'Guide to Pharmacology' 5674
55J UniChem 'PubChem DOTF' 123055402
55J UniChem ChEBI 91451
55J UniChem ZINC ZINC000018710085
55J UniChem fdasrs 8O434L3768
55J UniChem Selleck RAF265(CHIR-265)
55J UniChem 'PubChem TPHARMA' 16760016
55J UniChem LINCS LSM-1207
55J UniChem BindingDb 31088
55J UniChem BRENDA 256952
55J UniChem ChemicalBook CB92526152
55J UniChem ClinicalTrials CHIR-265
55J UniChem ClinicalTrials 'RAF 265'
55J UniChem ClinicalTrials RAF-265
55J UniChem ClinicalTrials RAF265
55J UniChem MedChemExpress HY-10248
55J UniChem 'Probes And Drugs' PD003613
55J UniChem eMolecules 32278206
55J UniChem SureChEMBL SCHEMBL686452
55J UniChem 'PubChem TPHARMA' 87231167
55J UniChem PubChem 11656518
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
55J C1 -1.295 0.519 1.413 ETKDGv3 1
55J C2 -1.607 -0.409 0.539 ETKDGv3 2
55J C3 -0.574 -1.079 -0.270 ETKDGv3 3
55J O1 2.389 0.800 1.057 ETKDGv3 4
55J C11 4.794 0.522 0.532 ETKDGv3 5
55J C12 7.190 0.259 0.025 ETKDGv3 6
55J C13 -3.404 0.212 1.648 ETKDGv3 7
55J C14 -3.562 -2.018 0.373 ETKDGv3 8
55J C15 -5.920 0.228 1.314 ETKDGv3 9
55J C16 -5.883 0.518 0.000 ETKDGv3 10
55J C17 -7.110 0.439 -0.818 ETKDGv3 11
55J C18 -8.289 0.119 -0.253 ETKDGv3 12
55J C19 -8.329 -0.197 1.197 ETKDGv3 13
55J C20 -7.214 -0.136 1.935 ETKDGv3 14
55J C21 8.981 -0.105 1.191 ETKDGv3 15
55J C22 9.388 -0.029 -0.067 ETKDGv3 16
55J C23 -9.531 -0.005 -1.099 ETKDGv3 17
55J C24 10.810 -0.056 -0.534 ETKDGv3 18
55J C4 0.705 -0.693 -0.113 ETKDGv3 19
55J C5 1.062 0.391 0.864 ETKDGv3 20
55J C6 0.095 0.956 1.613 ETKDGv3 21
55J C7 3.403 0.750 0.089 ETKDGv3 22
55J C8 3.155 0.953 -1.217 ETKDGv3 23
55J C9 4.269 0.909 -2.181 ETKDGv3 24
55J N1 5.483 0.692 -1.767 ETKDGv3 25
55J C10 5.789 0.491 -0.374 ETKDGv3 26
55J N2 -2.440 0.927 2.147 ETKDGv3 27
55J N3 -2.998 -0.692 0.604 ETKDGv3 28
55J N4 -4.747 0.314 2.141 ETKDGv3 29
55J N5 7.566 0.070 1.252 ETKDGv3 30
55J N6 8.270 0.224 -0.902 ETKDGv3 31
55J F1 -10.669 0.083 -0.317 ETKDGv3 32
55J F2 -9.574 1.005 -2.045 ETKDGv3 33
55J F3 -9.523 -1.228 -1.743 ETKDGv3 34
55J F4 10.860 -0.400 -1.872 ETKDGv3 35
55J F5 11.533 -0.983 0.195 ETKDGv3 36
55J F6 11.373 1.195 -0.366 ETKDGv3 37
55J H1 -0.833 -1.867 -0.965 ETKDGv3 38
55J H2 4.992 0.376 1.586 ETKDGv3 39
55J H3 -3.228 -2.404 -0.612 ETKDGv3 40
55J H4 -3.226 -2.712 1.172 ETKDGv3 41
55J H5 -4.669 -1.980 0.371 ETKDGv3 42
55J H6 -4.961 0.823 -0.479 ETKDGv3 43
55J H7 -7.042 0.643 -1.880 ETKDGv3 44
55J H8 -9.260 -0.482 1.670 ETKDGv3 45
55J H9 -7.258 -0.368 2.992 ETKDGv3 46
55J H10 9.617 -0.247 2.055 ETKDGv3 47
55J H11 1.479 -1.193 -0.680 ETKDGv3 48
55J H12 0.331 1.720 2.343 ETKDGv3 49
55J H13 2.156 1.172 -1.571 ETKDGv3 50
55J H14 4.078 1.060 -3.235 ETKDGv3 51
55J H15 -4.876 0.528 3.156 ETKDGv3 52
55J H17 8.252 0.384 -1.933 ETKDGv3 53
#