data_53D
#
_chem_comp.id 53D
_chem_comp.name
1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H34 F N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-08-19
_chem_comp.pdbx_modified_date 2021-11-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 443.557
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 53D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7FHI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
53D C5 C1 C 0 1 N N N N N N -2.802 -5.141 -1.729 1.835 1.079 -0.030 C5 53D 1
53D C2 C2 C 0 1 Y N N N N N -1.492 -2.636 -1.557 -0.932 0.538 0.058 C2 53D 2
53D C7 C3 C 0 1 Y N N N N N -0.901 -1.357 -1.517 -2.304 0.321 0.108 C7 53D 3
53D N14 N1 N 0 1 N N N N N N -0.856 0.973 -1.373 -4.179 -1.179 0.020 N14 53D 4
53D C13 C4 C 0 1 N N N N N N 1.568 -4.485 -0.794 -0.752 4.317 0.601 C13 53D 5
53D C8 C5 C 0 1 Y N N N N N -1.665 -0.258 -1.384 -2.804 -0.964 -0.030 C8 53D 6
53D C4 C6 C 0 1 N N N N N N -3.620 -3.983 -1.524 1.381 -0.312 -0.183 C4 53D 7
53D C3 C7 C 0 1 Y N N N N N -2.889 -2.698 -1.461 -0.070 -0.558 -0.132 C3 53D 8
53D C21 C8 C 0 1 N N N N N N 2.429 3.457 -0.399 -9.057 0.337 -0.585 C21 53D 9
53D C20 C9 C 0 1 N N N N N N 0.997 3.682 -0.883 -8.354 -0.634 0.366 C20 53D 10
53D C18 C10 C 0 1 N N N N N N -1.452 3.383 -0.508 -6.215 -1.149 1.379 C18 53D 11
53D N17 N2 N 0 1 N N N N N N -0.106 3.330 0.154 -6.903 -0.407 0.313 N17 53D 12
53D C16 C11 C 0 1 N N N N N N -0.006 1.961 0.760 -6.362 -0.761 -1.006 C16 53D 13
53D C19 C12 C 0 1 N N N N N N -1.701 2.221 -1.470 -4.720 -0.824 1.339 C19 53D 14
53D C15 C13 C 0 1 N N N N N N 0.281 0.983 -0.349 -4.867 -0.436 -1.045 C15 53D 15
53D C12 C14 C 0 1 N N N N N N 1.649 -5.007 -2.184 -1.424 3.984 -0.732 C12 53D 16
53D C28 C15 C 0 1 N N N N N N -8.779 -8.418 0.374 10.133 -1.166 -0.313 C28 53D 17
53D C29 C16 C 0 1 N N N N N N -6.707 -7.849 1.515 8.475 -2.304 1.035 C29 53D 18
53D N27 N3 N 0 1 N N N N N N -7.272 -8.402 0.220 8.704 -1.458 -0.144 N27 53D 19
53D C26 C17 C 0 1 N N N N N N -6.783 -7.652 -1.025 7.919 -0.218 -0.062 C26 53D 20
53D C25 C18 C 0 1 N N N N N N -5.601 -8.294 -1.803 6.428 -0.552 -0.138 C25 53D 21
53D C24 C19 C 0 1 N N N N N N -4.404 -8.445 -0.845 5.612 0.739 -0.053 C24 53D 22
53D O22 O1 O 0 1 N N N N N N -3.596 -6.963 -2.995 3.628 2.569 -0.052 O22 53D 23
53D N23 N4 N 0 1 N N N N N N -3.660 -7.198 -0.754 4.184 0.419 -0.125 N23 53D 24
53D C11 C20 C 0 1 N N N N N N 0.648 -3.939 -1.845 -1.351 2.928 0.373 C11 53D 25
53D C22 C21 C 0 1 N N N N N N -3.352 -6.515 -1.866 3.268 1.407 -0.069 C22 53D 26
53D O4 O2 O 0 1 N N N N N N -4.849 -3.983 -1.424 2.174 -1.224 -0.345 O4 53D 27
53D F9 F1 F 0 1 N N N N N N -3.783 0.825 -1.146 -2.441 -3.292 -0.349 F9 53D 28
53D C6 C22 C 0 1 N N N N N N -1.458 -4.984 -1.799 0.894 2.072 0.146 C6 53D 29
53D N1 N5 N 0 1 N N N N N N -0.790 -3.828 -1.705 -0.420 1.813 0.182 N1 53D 30
53D C10 C23 C 0 1 Y N N N N N -3.654 -1.545 -1.321 -0.588 -1.847 -0.268 C10 53D 31
53D C9 C24 C 0 1 Y N N N N N -3.043 -0.330 -1.282 -1.939 -2.045 -0.217 C9 53D 32
53D H7 H1 H 0 1 N N N N N N 0.172 -1.259 -1.594 -2.978 1.152 0.253 H7 53D 33
53D H132 H2 H 0 0 N N N N N N 1.168 -5.122 0.009 0.335 4.401 0.609 H132 53D 34
53D H131 H3 H 0 0 N N N N N N 2.379 -3.858 -0.395 -1.281 4.988 1.278 H131 53D 35
53D H211 H4 H 0 0 N N N N N N 3.134 3.732 -1.197 -10.133 0.169 -0.546 H211 53D 36
53D H213 H5 H 0 0 N N N N N N 2.618 4.079 0.488 -8.838 1.362 -0.284 H213 53D 37
53D H212 H6 H 0 0 N N N N N N 2.566 2.397 -0.139 -8.700 0.172 -1.601 H212 53D 38
53D H202 H7 H 0 0 N N N N N N 0.889 4.744 -1.150 -8.710 -0.469 1.383 H202 53D 39
53D H201 H8 H 0 0 N N N N N N 0.837 3.061 -1.777 -8.572 -1.659 0.066 H201 53D 40
53D H181 H9 H 0 0 N N N N N N -1.527 4.325 -1.072 -6.624 -0.860 2.346 H181 53D 41
53D H182 H10 H 0 0 N N N N N N -2.226 3.361 0.273 -6.359 -2.219 1.227 H182 53D 42
53D H161 H12 H 0 0 N N N N N N -0.955 1.700 1.252 -6.507 -1.827 -1.184 H161 53D 43
53D H162 H13 H 0 0 N N N N N N 0.809 1.938 1.499 -6.879 -0.190 -1.777 H162 53D 44
53D H192 H14 H 0 0 N N N N N N -1.570 2.616 -2.488 -4.203 -1.396 2.110 H192 53D 45
53D H191 H15 H 0 0 N N N N N N -2.747 1.910 -1.330 -4.574 0.241 1.518 H191 53D 46
53D H152 H16 H 0 0 N N N N N N 0.390 -0.025 0.078 -4.723 0.634 -0.894 H152 53D 47
53D H151 H17 H 0 0 N N N N N N 1.216 1.272 -0.851 -4.457 -0.725 -2.013 H151 53D 48
53D H121 H18 H 0 0 N N N N N N 1.308 -6.029 -2.408 -2.396 4.436 -0.932 H121 53D 49
53D H122 H19 H 0 0 N N N N N N 2.519 -4.765 -2.812 -0.780 3.849 -1.601 H122 53D 50
53D H282 H20 H 0 0 N N N N N N -9.049 -8.972 1.285 10.691 -2.101 -0.370 H282 53D 51
53D H281 H21 H 0 0 N N N N N N -9.151 -7.385 0.449 10.282 -0.597 -1.231 H281 53D 52
53D H283 H22 H 0 0 N N N N N N -9.232 -8.908 -0.500 10.488 -0.583 0.537 H283 53D 53
53D H291 H23 H 0 0 N N N N N N -7.097 -8.430 2.364 8.834 -1.790 1.926 H291 53D 54
53D H293 H24 H 0 0 N N N N N N -5.609 -7.920 1.496 7.408 -2.505 1.137 H293 53D 55
53D H292 H25 H 0 0 N N N N N N -7.005 -6.796 1.625 9.012 -3.245 0.916 H292 53D 56
53D H261 H27 H 0 0 N N N N N N -6.467 -6.647 -0.707 8.132 0.285 0.881 H261 53D 57
53D H262 H28 H 0 0 N N N N N N -7.632 -7.567 -1.719 8.188 0.437 -0.891 H262 53D 58
53D H252 H29 H 0 0 N N N N N N -5.900 -9.283 -2.181 6.216 -1.055 -1.081 H252 53D 59
53D H251 H30 H 0 0 N N N N N N -5.320 -7.648 -2.648 6.160 -1.207 0.691 H251 53D 60
53D H242 H31 H 0 0 N N N N N N -4.773 -8.719 0.154 5.824 1.242 0.891 H242 53D 61
53D H241 H32 H 0 0 N N N N N N -3.738 -9.236 -1.220 5.880 1.394 -0.882 H241 53D 62
53D H23 H33 H 0 1 N N N N N N -3.378 -6.850 0.140 3.897 -0.503 -0.213 H23 53D 63
53D H11 H34 H 0 1 N N N N N N 1.049 -2.972 -2.185 -2.274 2.684 0.899 H11 53D 64
53D H6 H35 H 0 1 N N N N N N -0.869 -5.878 -1.945 1.228 3.094 0.257 H6 53D 65
53D H10 H36 H 0 1 N N N N N N -4.729 -1.614 -1.244 0.077 -2.686 -0.414 H10 53D 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
53D O22 C22 DOUB N N 1
53D C12 C11 SING N N 2
53D C12 C13 SING N N 3
53D C22 C5 SING N N 4
53D C22 N23 SING N N 5
53D C11 N1 SING N N 6
53D C11 C13 SING N N 7
53D C25 C26 SING N N 8
53D C25 C24 SING N N 9
53D C6 C5 DOUB N N 10
53D C6 N1 SING N N 11
53D C5 C4 SING N N 12
53D N1 C2 SING N N 13
53D C2 C7 DOUB Y N 14
53D C2 C3 SING Y N 15
53D C4 C3 SING N N 16
53D C4 O4 DOUB N N 17
53D C7 C8 SING Y N 18
53D C19 N14 SING N N 19
53D C19 C18 SING N N 20
53D C3 C10 DOUB Y N 21
53D C8 N14 SING N N 22
53D C8 C9 DOUB Y N 23
53D N14 C15 SING N N 24
53D C10 C9 SING Y N 25
53D C9 F9 SING N N 26
53D C26 N27 SING N N 27
53D C20 C21 SING N N 28
53D C20 N17 SING N N 29
53D C24 N23 SING N N 30
53D C18 N17 SING N N 31
53D C15 C16 SING N N 32
53D N17 C16 SING N N 33
53D N27 C28 SING N N 34
53D N27 C29 SING N N 35
53D C7 H7 SING N N 36
53D C13 H132 SING N N 37
53D C13 H131 SING N N 38
53D C21 H211 SING N N 39
53D C21 H213 SING N N 40
53D C21 H212 SING N N 41
53D C20 H202 SING N N 42
53D C20 H201 SING N N 43
53D C18 H181 SING N N 44
53D C18 H182 SING N N 45
53D C16 H161 SING N N 46
53D C16 H162 SING N N 47
53D C19 H192 SING N N 48
53D C19 H191 SING N N 49
53D C15 H152 SING N N 50
53D C15 H151 SING N N 51
53D C12 H121 SING N N 52
53D C12 H122 SING N N 53
53D C28 H282 SING N N 54
53D C28 H281 SING N N 55
53D C28 H283 SING N N 56
53D C29 H291 SING N N 57
53D C29 H293 SING N N 58
53D C29 H292 SING N N 59
53D C26 H261 SING N N 60
53D C26 H262 SING N N 61
53D C25 H252 SING N N 62
53D C25 H251 SING N N 63
53D C24 H242 SING N N 64
53D C24 H241 SING N N 65
53D N23 H23 SING N N 66
53D C11 H11 SING N N 67
53D C6 H6 SING N N 68
53D C10 H10 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
53D InChI InChI 1.03 InChI=1S/C24H34FN5O2/c1-4-28-10-12-29(13-11-28)22-15-21-18(14-20(22)25)23(31)19(16-30(21)17-6-7-17)24(32)26-8-5-9-27(2)3/h14-17H,4-13H2,1-3H3,(H,26,32)
53D InChIKey InChI 1.03 SJAQLOUTDAIPJJ-UHFFFAOYSA-N
53D SMILES_CANONICAL CACTVS 3.385 CCN1CCN(CC1)c2cc3N(C=C(C(=O)NCCCN(C)C)C(=O)c3cc2F)C4CC4
53D SMILES CACTVS 3.385 CCN1CCN(CC1)c2cc3N(C=C(C(=O)NCCCN(C)C)C(=O)c3cc2F)C4CC4
53D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCN1CCN(CC1)c2cc3c(cc2F)C(=O)C(=CN3C4CC4)C(=O)NCCCN(C)C
53D SMILES "OpenEye OEToolkits" 2.0.7 CCN1CCN(CC1)c2cc3c(cc2F)C(=O)C(=CN3C4CC4)C(=O)NCCCN(C)C
#
_pdbx_chem_comp_identifier.comp_id 53D
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
1-cyclopropyl-~{N}-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
53D 'Create component' 2021-08-19 PDBJ
53D 'Initial release' 2021-12-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
53D C5 C 14.785 1.399 1
53D C2 C 12.187 -0.101 2
53D C7 C 10.846 -0.902 3
53D N14 N 8.190 -0.887 4
53D C13 C 14.236 -3.650 5
53D C8 C 9.486 -0.132 6
53D C4 C 13.486 2.150 7
53D C3 C 12.187 1.399 8
53D C21 C 3.000 -2.407 9
53D C20 C 4.302 -3.152 10
53D C18 C 6.900 -3.142 11
53D N17 N 5.598 -2.397 12
53D C16 C 5.592 -0.897 13
53D C19 C 8.196 -2.387 14
53D C15 C 6.888 -0.142 15
53D C12 C 12.736 -3.650 16
53D C28 C 23.878 2.150 17
53D C29 C 22.579 -0.101 18
53D N27 N 22.579 1.399 19
53D C26 C 21.280 2.150 20
53D C25 C 19.981 1.399 21
53D C24 C 18.682 2.150 22
53D O22 O 16.084 3.650 23
53D N23 N 17.383 1.399 24
53D C11 C 13.486 -2.350 25
53D C22 C 16.084 2.150 26
53D O4 O 13.486 3.650 27
53D F9 F 8.190 2.186 28
53D C6 C 14.785 -0.101 29
53D N1 N 13.486 -0.851 30
53D C10 C 10.846 2.202 31
53D C9 C 9.486 1.431 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
53D O22 C22 DOUBLE NONE 1
53D C12 C11 SINGLE NONE 2
53D C12 C13 SINGLE NONE 3
53D C22 C5 SINGLE NONE 4
53D C22 N23 SINGLE NONE 5
53D C11 N1 SINGLE NONE 6
53D C11 C13 SINGLE NONE 7
53D C25 C26 SINGLE NONE 8
53D C25 C24 SINGLE NONE 9
53D C6 C5 DOUBLE NONE 10
53D C6 N1 SINGLE NONE 11
53D C5 C4 SINGLE NONE 12
53D N1 C2 SINGLE NONE 13
53D C2 C7 SINGLE NONE 14
53D C2 C3 DOUBLE NONE 15
53D C4 C3 SINGLE NONE 16
53D C4 O4 DOUBLE NONE 17
53D C7 C8 DOUBLE NONE 18
53D C19 N14 SINGLE NONE 19
53D C19 C18 SINGLE NONE 20
53D C3 C10 SINGLE NONE 21
53D C8 N14 SINGLE NONE 22
53D C8 C9 SINGLE NONE 23
53D N14 C15 SINGLE NONE 24
53D C10 C9 DOUBLE NONE 25
53D C9 F9 SINGLE NONE 26
53D C26 N27 SINGLE NONE 27
53D C20 C21 SINGLE NONE 28
53D C20 N17 SINGLE NONE 29
53D C24 N23 SINGLE NONE 30
53D C18 N17 SINGLE NONE 31
53D C15 C16 SINGLE NONE 32
53D N17 C16 SINGLE NONE 33
53D N27 C28 SINGLE NONE 34
53D N27 C29 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
53D MurckoScaffold S1 scaffold O=c1ccn(C2CC2)c2cc(N3CCNCC3)ccc12 InChI=1S/C16H19N3O/c20-16-5-8-19(12-1-2-12)15-11-13(3-4-14(15)16)18-9-6-17-7-10-18/h3-5,8,11-12,17H,1-2,6-7,9-10H2 NDCOYVURMDZHEN-UHFFFAOYSA-N
53D amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
53D cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
53D phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
53D piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
53D pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
53D quinoline F6 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
53D C5 S1 1
53D C2 S1 1
53D C7 S1 1
53D N14 S1 1
53D C13 S1 1
53D C8 S1 1
53D C4 S1 1
53D C3 S1 1
53D C18 S1 1
53D N17 S1 1
53D C16 S1 1
53D C19 S1 1
53D C15 S1 1
53D C12 S1 1
53D C11 S1 1
53D O4 S1 1
53D C6 S1 1
53D N1 S1 1
53D C10 S1 1
53D C9 S1 1
53D N23 F1 1
53D C22 F1 1
53D O22 F1 1
53D C5 F1 1
53D C13 F2 1
53D C12 F2 1
53D C11 F2 1
53D C2 F3 1
53D C7 F3 1
53D C8 F3 1
53D C9 F3 1
53D C10 F3 1
53D C3 F3 1
53D N14 F4 1
53D C19 F4 1
53D C18 F4 1
53D N17 F4 1
53D C16 F4 1
53D C15 F4 1
53D C2 F5 1
53D C3 F5 1
53D C4 F5 1
53D C5 F5 1
53D C6 F5 1
53D N1 F5 1
53D C9 F6 1
53D C10 F6 1
53D C3 F6 1
53D C2 F6 1
53D C7 F6 1
53D C8 F6 1
53D N1 F6 1
53D C6 F6 1
53D C5 F6 1
53D C4 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 53D
_pdbe_chem_comp_rdkit_properties.exactmw 443.270
_pdbe_chem_comp_rdkit_properties.amw 443.567
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.583
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 236.150
_pdbe_chem_comp_rdkit_properties.tpsa 60.820
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.335
_pdbe_chem_comp_rdkit_properties.CrippenMR 123.080
_pdbe_chem_comp_rdkit_properties.chi0v 15.431
_pdbe_chem_comp_rdkit_properties.chi1v 8.228
_pdbe_chem_comp_rdkit_properties.chi2v 3.756
_pdbe_chem_comp_rdkit_properties.chi3v 3.756
_pdbe_chem_comp_rdkit_properties.chi4v 2.379
_pdbe_chem_comp_rdkit_properties.chi0n 49.431
_pdbe_chem_comp_rdkit_properties.chi1n 25.175
_pdbe_chem_comp_rdkit_properties.chi2n 3.756
_pdbe_chem_comp_rdkit_properties.chi3n 3.756
_pdbe_chem_comp_rdkit_properties.chi4n 2.379
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.450
_pdbe_chem_comp_rdkit_properties.kappa1 5.438
_pdbe_chem_comp_rdkit_properties.kappa2 9.584
_pdbe_chem_comp_rdkit_properties.kappa3 4.809
_pdbe_chem_comp_rdkit_properties.Phi 1.629
#
_pdbe_chem_comp_external_mappings.comp_id 53D
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 157049300
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
53D C5 2.302 0.388 -1.863 ETKDGv3 1
53D C2 -0.470 -0.213 -1.522 ETKDGv3 2
53D C7 -1.741 -0.646 -0.882 ETKDGv3 3
53D N14 -3.816 -0.182 0.263 ETKDGv3 4
53D C13 -1.333 -2.443 -3.518 ETKDGv3 5
53D C8 -2.591 0.252 -0.354 ETKDGv3 6
53D C4 1.292 1.458 -1.708 ETKDGv3 7
53D C3 -0.098 1.079 -1.394 ETKDGv3 8
53D C21 -8.178 1.053 2.397 ETKDGv3 9
53D C20 -7.754 -0.212 1.656 ETKDGv3 10
53D C18 -5.376 -0.444 2.159 ETKDGv3 11
53D N17 -6.375 -0.074 1.141 ETKDGv3 12
53D C16 -6.191 -0.883 -0.086 ETKDGv3 13
53D C19 -4.007 0.054 1.700 ETKDGv3 14
53D C15 -4.707 -1.102 -0.458 ETKDGv3 15
53D C12 -0.519 -3.404 -2.659 ETKDGv3 16
53D C28 8.276 0.557 2.339 ETKDGv3 17
53D C29 6.237 -0.452 3.112 ETKDGv3 18
53D N27 6.965 0.025 1.925 ETKDGv3 19
53D C26 6.174 1.054 1.215 ETKDGv3 20
53D C25 6.542 1.082 -0.276 ETKDGv3 21
53D C24 5.705 2.104 -1.058 ETKDGv3 22
53D O22 4.532 -0.020 -2.562 ETKDGv3 23
53D N23 4.287 1.746 -1.053 ETKDGv3 24
53D C11 0.121 -2.131 -3.185 ETKDGv3 25
53D C22 3.754 0.684 -1.861 ETKDGv3 26
53D O4 1.610 2.672 -1.831 ETKDGv3 27
53D F9 -3.110 2.621 0.081 ETKDGv3 28
53D C6 1.867 -0.871 -2.031 ETKDGv3 29
53D N1 0.458 -1.161 -2.120 ETKDGv3 30
53D C10 -1.048 2.079 -0.849 ETKDGv3 31
53D C9 -2.236 1.690 -0.377 ETKDGv3 32
53D H7 -1.967 -1.696 -0.781 ETKDGv3 33
53D H132 -2.139 -1.901 -3.001 ETKDGv3 34
53D H131 -1.487 -2.809 -4.555 ETKDGv3 35
53D H211 -7.574 1.200 3.315 ETKDGv3 36
53D H213 -9.246 0.971 2.692 ETKDGv3 37
53D H212 -8.059 1.938 1.736 ETKDGv3 38
53D H202 -8.475 -0.351 0.818 ETKDGv3 39
53D H201 -7.850 -1.096 2.327 ETKDGv3 40
53D H181 -5.353 -1.549 2.305 ETKDGv3 41
53D H182 -5.606 0.024 3.140 ETKDGv3 42
53D H161 -6.676 -1.881 0.024 ETKDGv3 43
53D H162 -6.694 -0.360 -0.928 ETKDGv3 44
53D H192 -3.208 -0.461 2.276 ETKDGv3 45
53D H191 -3.944 1.142 1.910 ETKDGv3 46
53D H152 -4.583 -0.976 -1.557 ETKDGv3 47
53D H151 -4.416 -2.145 -0.207 ETKDGv3 48
53D H121 -0.195 -4.325 -3.189 ETKDGv3 49
53D H122 -0.762 -3.407 -1.578 ETKDGv3 50
53D H282 8.163 1.411 3.044 ETKDGv3 51
53D H281 8.872 -0.240 2.834 ETKDGv3 52
53D H283 8.860 0.892 1.457 ETKDGv3 53
53D H291 6.003 0.387 3.805 ETKDGv3 54
53D H293 5.290 -0.946 2.805 ETKDGv3 55
53D H292 6.837 -1.215 3.654 ETKDGv3 56
53D H261 5.087 0.821 1.285 ETKDGv3 57
53D H262 6.321 2.062 1.666 ETKDGv3 58
53D H252 7.611 1.356 -0.395 ETKDGv3 59
53D H251 6.405 0.068 -0.710 ETKDGv3 60
53D H242 5.834 3.109 -0.601 ETKDGv3 61
53D H241 6.070 2.167 -2.105 ETKDGv3 62
53D H23 3.653 2.282 -0.419 ETKDGv3 63
53D H11 0.860 -2.288 -4.002 ETKDGv3 64
53D H6 2.580 -1.673 -2.194 ETKDGv3 65
53D H10 -0.784 3.129 -0.833 ETKDGv3 66
#