data_51B
#
_chem_comp.id 51B
_chem_comp.name (6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H22 N6 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-07-08
_chem_comp.pdbx_modified_date 2023-02-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 382.483
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 51B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5C45
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
51B N01 N1 N 0 1 Y N N N N N 27.659 35.603 19.722 2.145 2.097 -0.139 N01 51B 1
51B C02 C1 C 0 1 Y N N N N N 27.909 36.830 20.105 1.879 0.860 0.232 C02 51B 2
51B N03 N2 N 0 1 Y N N N N N 27.670 37.318 21.353 2.806 -0.073 0.261 N03 51B 3
51B C04 C2 C 0 1 Y N N N N N 27.196 36.466 22.310 4.065 0.203 -0.088 C04 51B 4
51B C05 C3 C 0 1 Y N N N N N 26.944 35.158 22.012 4.386 1.503 -0.487 C05 51B 5
51B C06 C4 C 0 1 Y N N N N N 27.156 34.696 20.654 3.374 2.455 -0.502 C06 51B 6
51B O07 O1 O 0 1 N N N N N N 26.906 33.538 20.298 3.634 3.730 -0.881 O07 51B 7
51B C08 C5 C 0 1 N N S N N N 28.358 37.878 19.099 0.471 0.505 0.634 C08 51B 8
51B C09 C6 C 0 1 N N N N N N 27.788 39.189 19.664 -0.477 0.766 -0.538 C09 51B 9
51B N10 N3 N 0 1 N N N N N N 28.001 40.296 18.736 -1.852 0.440 -0.140 N10 51B 10
51B C11 C7 C 0 1 N N N N N N 27.279 40.027 17.472 -2.297 1.287 0.974 C11 51B 11
51B C12 C8 C 0 1 N N N N N N 27.805 38.760 16.806 -1.404 1.042 2.192 C12 51B 12
51B C13 C9 C 0 1 N N N N N N 27.703 37.570 17.748 0.048 1.366 1.828 C13 51B 13
51B C14 C10 C 0 1 Y N N N N N 27.021 37.145 23.588 5.101 -0.848 -0.053 C14 51B 14
51B S15 S1 S 0 1 Y N N N N N 27.433 38.804 23.814 4.814 -2.546 0.307 S15 51B 15
51B C16 C11 C 0 1 Y N N N N N 26.954 38.778 25.423 6.523 -2.908 0.109 C16 51B 16
51B C17 C12 C 0 1 Y N N N N N 26.472 37.579 25.762 7.190 -1.791 -0.201 C17 51B 17
51B C18 C13 C 0 1 Y N N N N N 26.506 36.637 24.715 6.414 -0.656 -0.297 C18 51B 18
51B C19 C14 C 0 1 N N N N N N 27.623 41.602 19.308 -2.771 0.546 -1.281 C19 51B 19
51B C20 C15 C 0 1 Y N N N N N 27.868 41.815 20.789 -4.112 -0.027 -0.902 C20 51B 20
51B C21 C16 C 0 1 Y N N N N N 26.828 41.968 21.692 -4.390 -1.370 -1.100 C21 51B 21
51B N22 N4 N 0 1 Y N N N N N 26.992 42.268 22.991 -5.577 -1.841 -0.756 N22 51B 22
51B C23 C17 C 0 1 Y N N N N N 28.262 42.457 23.381 -6.495 -1.044 -0.228 C23 51B 23
51B N24 N5 N 0 1 Y N N N N N 29.353 42.397 22.595 -6.261 0.244 -0.026 N24 51B 24
51B C25 C18 C 0 1 Y N N N N N 29.121 42.104 21.305 -5.092 0.777 -0.343 C25 51B 25
51B N26 N6 N 0 1 N N N N N N 28.447 42.788 24.667 -7.727 -1.570 0.120 N26 51B 26
51B C27 C19 C 0 1 N N N N N N 29.731 43.048 25.286 -8.754 -0.704 0.705 C27 51B 27
51B H1 H1 H 0 1 N N N N N N 26.593 34.479 22.775 5.394 1.762 -0.776 H1 51B 28
51B H3 H3 H 0 1 N N N N N N 29.454 37.919 19.016 0.426 -0.548 0.911 H3 51B 29
51B H4 H4 H 0 1 N N N N N N 28.288 39.417 20.617 -0.421 1.816 -0.824 H4 51B 30
51B H5 H5 H 0 1 N N N N N N 26.708 39.067 19.836 -0.187 0.144 -1.385 H5 51B 31
51B H7 H7 H 0 1 N N N N N N 27.419 40.878 16.789 -2.233 2.335 0.681 H7 51B 32
51B H8 H8 H 0 1 N N N N N N 26.208 39.902 17.688 -3.329 1.043 1.226 H8 51B 33
51B H9 H9 H 0 1 N N N N N N 27.213 38.556 15.902 -1.725 1.682 3.014 H9 51B 34
51B H10 H10 H 0 1 N N N N N N 28.859 38.910 16.528 -1.478 -0.003 2.494 H10 51B 35
51B H11 H11 H 0 1 N N N N N N 26.642 37.330 17.910 0.694 1.152 2.679 H11 51B 36
51B H12 H12 H 0 1 N N N N N N 28.209 36.706 17.292 0.130 2.421 1.563 H12 51B 37
51B H13 H13 H 0 1 N N N N N N 27.026 39.620 26.096 6.968 -3.886 0.222 H13 51B 38
51B H14 H14 H 0 1 N N N N N N 26.092 37.353 26.747 8.257 -1.780 -0.368 H14 51B 39
51B H15 H15 H 0 1 N N N N N N 26.156 35.620 24.810 6.826 0.311 -0.545 H15 51B 40
51B H16 H16 H 0 1 N N N N N N 28.188 42.375 18.766 -2.888 1.594 -1.557 H16 51B 41
51B H17 H17 H 0 1 N N N N N N 26.547 41.741 19.129 -2.365 -0.009 -2.127 H17 51B 42
51B H18 H18 H 0 1 N N N N N N 25.820 41.838 21.328 -3.646 -2.025 -1.530 H18 51B 43
51B H19 H19 H 0 1 N N N N N N 29.963 42.093 20.628 -4.906 1.827 -0.171 H19 51B 44
51B H20 H20 H 0 1 N N N N N N 27.911 43.621 24.807 -7.910 -2.512 -0.023 H20 51B 45
51B H21 H21 H 0 1 N N N N N N 29.583 43.296 26.347 -8.380 -0.273 1.633 H21 51B 46
51B H22 H22 H 0 1 N N N N N N 30.366 42.153 25.203 -8.997 0.095 0.005 H22 51B 47
51B H23 H23 H 0 1 N N N N N N 30.219 43.892 24.777 -9.649 -1.291 0.912 H23 51B 48
51B H2 H2 H 0 1 N N N N N N 27.111 33.439 19.376 3.896 4.311 -0.154 H2 51B 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
51B C12 C11 SING N N 1
51B C12 C13 SING N N 2
51B C11 N10 SING N N 3
51B C13 C08 SING N N 4
51B N10 C19 SING N N 5
51B N10 C09 SING N N 6
51B C08 C09 SING N N 7
51B C08 C02 SING N N 8
51B C19 C20 SING N N 9
51B N01 C02 DOUB Y N 10
51B N01 C06 SING Y N 11
51B C02 N03 SING Y N 12
51B O07 C06 SING N N 13
51B C06 C05 DOUB Y N 14
51B C20 C25 DOUB Y N 15
51B C20 C21 SING Y N 16
51B C25 N24 SING Y N 17
51B N03 C04 DOUB Y N 18
51B C21 N22 DOUB Y N 19
51B C05 C04 SING Y N 20
51B C04 C14 SING N N 21
51B N24 C23 DOUB Y N 22
51B N22 C23 SING Y N 23
51B C23 N26 SING N N 24
51B C14 S15 SING Y N 25
51B C14 C18 DOUB Y N 26
51B S15 C16 SING Y N 27
51B N26 C27 SING N N 28
51B C18 C17 SING Y N 29
51B C16 C17 DOUB Y N 30
51B C05 H1 SING N N 31
51B C08 H3 SING N N 32
51B C09 H4 SING N N 33
51B C09 H5 SING N N 34
51B C11 H7 SING N N 35
51B C11 H8 SING N N 36
51B C12 H9 SING N N 37
51B C12 H10 SING N N 38
51B C13 H11 SING N N 39
51B C13 H12 SING N N 40
51B C16 H13 SING N N 41
51B C17 H14 SING N N 42
51B C18 H15 SING N N 43
51B C19 H16 SING N N 44
51B C19 H17 SING N N 45
51B C21 H18 SING N N 46
51B C25 H19 SING N N 47
51B N26 H20 SING N N 48
51B C27 H21 SING N N 49
51B C27 H22 SING N N 50
51B C27 H23 SING N N 51
51B O07 H2 SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
51B SMILES ACDLabs 12.01 CNc1ncc(cn1)CN1CCCC(C1)c1nc(O)cc(n1)c1cccs1
51B InChI InChI 1.06 InChI=1S/C19H22N6OS/c1-20-19-21-9-13(10-22-19)11-25-6-2-4-14(12-25)18-23-15(8-17(26)24-18)16-5-3-7-27-16/h3,5,7-10,14H,2,4,6,11-12H2,1H3,(H,20,21,22)(H,23,24,26)/t14-/m0/s1
51B InChIKey InChI 1.06 ZSXCVAIJFUEGJR-AWEZNQCLSA-N
51B SMILES_CANONICAL CACTVS 3.385 CNc1ncc(CN2CCC[C@@H](C2)c3nc(O)cc(n3)c4sccc4)cn1
51B SMILES CACTVS 3.385 CNc1ncc(CN2CCC[CH](C2)c3nc(O)cc(n3)c4sccc4)cn1
51B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CNc1ncc(cn1)CN2CCC[C@@H](C2)c3nc(cc(n3)O)c4cccs4
51B SMILES "OpenEye OEToolkits" 2.0.7 CNc1ncc(cn1)CN2CCCC(C2)c3nc(cc(n3)O)c4cccs4
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
51B "SYSTEMATIC NAME" ACDLabs 12.01 (6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol
51B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 2-[(3~{S})-1-[[2-(methylamino)pyrimidin-5-yl]methyl]piperidin-3-yl]-6-thiophen-2-yl-pyrimidin-4-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
51B 'Create component' 2015-07-08 RCSB
51B 'Initial release' 2015-10-07 RCSB
51B 'Modify value order' 2023-02-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
51B N01 N 9.271 1.590 1
51B C02 C 9.271 0.090 2
51B N03 N 7.972 -0.660 3
51B C04 C 6.673 0.090 4
51B C05 C 6.673 1.590 5
51B C06 C 7.972 2.340 6
51B O07 O 7.972 3.840 7
51B C08 C 10.570 -0.660 8
51B C09 C 11.869 0.090 9
51B N10 N 13.168 -0.660 10
51B C11 C 13.168 -2.160 11
51B C12 C 11.869 -2.910 12
51B C13 C 10.570 -2.160 13
51B C14 C 5.374 -0.660 14
51B S15 S 5.217 -2.152 15
51B C16 C 3.750 -2.464 16
51B C17 C 3.000 -1.165 17
51B C18 C 4.004 -0.050 18
51B C19 C 14.467 0.090 19
51B C20 C 15.766 -0.660 20
51B C21 C 17.065 0.090 21
51B N22 N 18.364 -0.660 22
51B C23 C 18.364 -2.160 23
51B N24 N 17.065 -2.910 24
51B C25 C 15.766 -2.160 25
51B N26 N 19.663 -2.910 26
51B C27 C 20.962 -2.160 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
51B C12 C11 SINGLE NONE 1
51B C12 C13 SINGLE NONE 2
51B C11 N10 SINGLE NONE 3
51B C13 C08 SINGLE NONE 4
51B N10 C19 SINGLE NONE 5
51B N10 C09 SINGLE NONE 6
51B C08 C09 SINGLE NONE 7
51B C08 C02 SINGLE BEGINDASH 8
51B C19 C20 SINGLE NONE 9
51B N01 C02 DOUBLE NONE 10
51B N01 C06 SINGLE NONE 11
51B C02 N03 SINGLE NONE 12
51B O07 C06 SINGLE NONE 13
51B C06 C05 DOUBLE NONE 14
51B C20 C25 SINGLE NONE 15
51B C20 C21 DOUBLE NONE 16
51B C25 N24 DOUBLE NONE 17
51B N03 C04 DOUBLE NONE 18
51B C21 N22 SINGLE NONE 19
51B C05 C04 SINGLE NONE 20
51B C04 C14 SINGLE NONE 21
51B N24 C23 SINGLE NONE 22
51B N22 C23 DOUBLE NONE 23
51B C23 N26 SINGLE NONE 24
51B C14 S15 SINGLE NONE 25
51B C14 C18 DOUBLE NONE 26
51B S15 C16 SINGLE NONE 27
51B N26 C27 SINGLE NONE 28
51B C18 C17 SINGLE NONE 29
51B C16 C17 DOUBLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
51B MurckoScaffold S1 scaffold 'c1csc(-c2ccnc([C@H]3CCCN(Cc4cncnc4)C3)n2)c1' InChI=1S/C18H19N5S/c1-3-15(12-23(7-1)11-14-9-19-13-20-10-14)18-21-6-5-16(22-18)17-4-2-8-24-17/h2,4-6,8-10,13,15H,1,3,7,11-12H2/t15-/m0/s1 RIGOXWVSYMVEGP-HNNXBMFYSA-N
51B pyrimidine F1 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
51B thiophen F2 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
51B Z56761943 F3 fragment Cc1cc(O)nc(C(C)C)n1 InChI=1S/C8H12N2O/c1-5(2)8-9-6(3)4-7(11)10-8/h4-5H,1-3H3,(H,9,10,11) AJPIUNPJBFBUKK-UHFFFAOYSA-N
51B Z54628578 F4 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
51B N01 S1 1
51B C02 S1 1
51B N03 S1 1
51B C04 S1 1
51B C05 S1 1
51B C06 S1 1
51B C08 S1 1
51B C09 S1 1
51B N10 S1 1
51B C11 S1 1
51B C12 S1 1
51B C13 S1 1
51B C14 S1 1
51B S15 S1 1
51B C16 S1 1
51B C17 S1 1
51B C18 S1 1
51B C19 S1 1
51B C20 S1 1
51B C21 S1 1
51B N22 S1 1
51B C23 S1 1
51B N24 S1 1
51B C25 S1 1
51B C05 F1 1
51B C06 F1 1
51B N01 F1 1
51B C02 F1 1
51B N03 F1 1
51B C04 F1 1
51B C20 F1 2
51B C25 F1 2
51B N24 F1 2
51B C23 F1 2
51B N22 F1 2
51B C21 F1 2
51B C14 F2 1
51B C18 F2 1
51B C17 F2 1
51B C16 F2 1
51B S15 F2 1
51B C09 F3 1
51B C08 F3 1
51B C13 F3 1
51B C02 F3 1
51B N03 F3 1
51B C04 F3 1
51B C14 F3 1
51B C05 F3 1
51B C06 F3 1
51B O07 F3 1
51B N01 F3 1
51B C27 F4 1
51B N26 F4 1
51B C23 F4 1
51B N24 F4 1
51B C25 F4 1
51B C20 F4 1
51B C21 F4 1
51B N22 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 51B
_pdbe_chem_comp_rdkit_properties.exactmw 382.158
_pdbe_chem_comp_rdkit_properties.amw 382.493
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.368
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 192.771
_pdbe_chem_comp_rdkit_properties.tpsa 87.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.790
_pdbe_chem_comp_rdkit_properties.CrippenMR 102.553
_pdbe_chem_comp_rdkit_properties.chi0v 13.816
_pdbe_chem_comp_rdkit_properties.chi1v 7.836
_pdbe_chem_comp_rdkit_properties.chi2v 3.611
_pdbe_chem_comp_rdkit_properties.chi3v 3.611
_pdbe_chem_comp_rdkit_properties.chi4v 2.345
_pdbe_chem_comp_rdkit_properties.chi0n 35.000
_pdbe_chem_comp_rdkit_properties.chi1n 17.875
_pdbe_chem_comp_rdkit_properties.chi2n 2.907
_pdbe_chem_comp_rdkit_properties.chi3n 2.907
_pdbe_chem_comp_rdkit_properties.chi4n 1.845
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.580
_pdbe_chem_comp_rdkit_properties.kappa1 5.484
_pdbe_chem_comp_rdkit_properties.kappa2 7.975
_pdbe_chem_comp_rdkit_properties.kappa3 4.227
_pdbe_chem_comp_rdkit_properties.Phi 1.620
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
51B UniChem ZINC ZINC000019592386
51B UniChem PubChem 135567058
51B UniChem MedChemExpress HY-19487A
51B UniChem 'Probes And Drugs' PD101021
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
51B N01 1.005 -0.991 1.851 ETKDGv3 1
51B C02 1.135 -0.306 0.751 ETKDGv3 2
51B N03 2.414 0.252 0.407 ETKDGv3 3
51B C04 3.455 0.103 1.174 ETKDGv3 4
51B C05 3.312 -0.666 2.434 ETKDGv3 5
51B C06 2.116 -1.187 2.739 ETKDGv3 6
51B O07 1.932 -1.919 3.910 ETKDGv3 7
51B C08 -0.039 -0.133 -0.177 ETKDGv3 8
51B C09 0.164 -1.013 -1.439 ETKDGv3 9
51B N10 -0.648 -0.574 -2.594 ETKDGv3 10
51B C11 -0.606 0.868 -2.936 ETKDGv3 11
51B C12 0.177 1.709 -1.921 ETKDGv3 12
51B C13 -0.271 1.361 -0.505 ETKDGv3 13
51B C14 4.737 0.707 0.758 ETKDGv3 14
51B S15 4.957 1.643 -0.742 ETKDGv3 15
51B C16 6.678 1.935 -0.414 ETKDGv3 16
51B C17 7.011 1.357 0.737 ETKDGv3 17
51B C18 5.900 0.651 1.414 ETKDGv3 18
51B C19 -1.965 -1.230 -2.752 ETKDGv3 19
51B C20 -2.867 -1.070 -1.550 ETKDGv3 20
51B C21 -3.642 0.013 -1.386 ETKDGv3 21
51B N22 -4.472 0.134 -0.221 ETKDGv3 22
51B C23 -4.503 -0.800 0.686 ETKDGv3 23
51B N24 -3.700 -1.980 0.521 ETKDGv3 24
51B C25 -2.933 -2.129 -0.518 ETKDGv3 25
51B N26 -5.332 -0.664 1.846 ETKDGv3 26
51B C27 -6.164 0.511 2.073 ETKDGv3 27
51B H1 4.149 -0.813 3.103 ETKDGv3 28
51B H3 -0.943 -0.494 0.358 ETKDGv3 29
51B H4 -0.046 -2.077 -1.192 ETKDGv3 30
51B H5 1.231 -0.981 -1.752 ETKDGv3 31
51B H7 -1.627 1.293 -3.027 ETKDGv3 32
51B H8 -0.127 0.980 -3.931 ETKDGv3 33
51B H9 -0.005 2.789 -2.115 ETKDGv3 34
51B H10 1.268 1.522 -2.030 ETKDGv3 35
51B H11 0.253 2.024 0.219 ETKDGv3 36
51B H12 -1.355 1.594 -0.411 ETKDGv3 37
51B H13 7.359 2.493 -1.043 ETKDGv3 38
51B H14 8.013 1.402 1.143 ETKDGv3 39
51B H15 6.041 0.141 2.356 ETKDGv3 40
51B H16 -1.802 -2.312 -2.944 ETKDGv3 41
51B H17 -2.477 -0.845 -3.662 ETKDGv3 42
51B H18 -3.660 0.802 -2.125 ETKDGv3 43
51B H19 -2.339 -3.028 -0.617 ETKDGv3 44
51B H20 -5.338 -1.432 2.554 ETKDGv3 45
51B H21 -6.716 0.403 3.030 ETKDGv3 46
51B H22 -6.897 0.620 1.246 ETKDGv3 47
51B H23 -5.526 1.419 2.127 ETKDGv3 48
51B H2 2.690 -2.081 4.564 ETKDGv3 49
#