data_4ZE
#
_chem_comp.id 4ZE
_chem_comp.name 4-amino-2-methylphenol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H9 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-07-30
_chem_comp.pdbx_modified_date 2014-02-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 123.152
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4ZE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4LLP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4ZE C1 C1 C 0 1 N N N N N N 3.334 13.845 40.347 -1.734 1.863 0.007 C1 4ZE 1
4ZE C2 C2 C 0 1 Y N N N N N 3.909 13.315 41.639 -0.701 0.765 0.006 C2 4ZE 2
4ZE C3 C3 C 0 1 Y N N N N N 4.369 12.004 41.731 0.643 1.082 -0.003 C3 4ZE 3
4ZE C4 C4 C 0 1 Y N N N N N 4.896 11.523 42.928 1.594 0.070 -0.004 C4 4ZE 4
4ZE N5 N5 N 0 1 N N N N N N 5.341 10.259 43.030 2.956 0.390 -0.012 N5 4ZE 5
4ZE C6 C6 C 0 1 Y N N N N N 4.967 12.352 44.048 1.192 -1.259 0.004 C6 4ZE 6
4ZE C7 C7 C 0 1 Y N N N N N 4.504 13.658 43.954 -0.153 -1.574 0.013 C7 4ZE 7
4ZE C8 C8 C 0 1 Y N N N N N 3.979 14.137 42.757 -1.102 -0.563 0.019 C8 4ZE 8
4ZE O9 O9 O 0 1 N N N N N N 3.541 15.390 42.684 -2.426 -0.874 0.033 O9 4ZE 9
4ZE H1 H1 H 0 1 N N N N N N 2.250 13.661 40.325 -1.988 2.124 -1.020 H1 4ZE 10
4ZE H2 H2 H 0 1 N N N N N N 3.524 14.926 40.278 -2.628 1.520 0.527 H2 4ZE 11
4ZE H3 H3 H 0 1 N N N N N N 3.810 13.334 39.497 -1.332 2.740 0.515 H3 4ZE 12
4ZE H4 H4 H 0 1 N N N N N N 4.317 11.356 40.869 0.954 2.116 -0.009 H4 4ZE 13
4ZE H5 H5 H 0 1 N N N N N N 5.680 10.098 43.957 3.236 1.318 -0.017 H5 4ZE 14
4ZE H6 H6 H 0 1 N N N N N N 4.593 9.625 42.834 3.620 -0.317 -0.013 H6 4ZE 15
4ZE H7 H7 H 0 1 N N N N N N 5.377 11.983 44.976 1.931 -2.047 0.003 H7 4ZE 16
4ZE H8 H8 H 0 1 N N N N N N 4.552 14.307 44.816 -0.465 -2.608 0.018 H8 4ZE 17
4ZE H9 H9 H 0 1 N N N N N N 3.657 15.816 43.525 -2.816 -0.970 -0.847 H9 4ZE 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4ZE C1 C2 SING N N 1
4ZE C2 C3 DOUB Y N 2
4ZE C2 C8 SING Y N 3
4ZE C3 C4 SING Y N 4
4ZE O9 C8 SING N N 5
4ZE C8 C7 DOUB Y N 6
4ZE C4 N5 SING N N 7
4ZE C4 C6 DOUB Y N 8
4ZE C7 C6 SING Y N 9
4ZE C1 H1 SING N N 10
4ZE C1 H2 SING N N 11
4ZE C1 H3 SING N N 12
4ZE C3 H4 SING N N 13
4ZE N5 H5 SING N N 14
4ZE N5 H6 SING N N 15
4ZE C6 H7 SING N N 16
4ZE C7 H8 SING N N 17
4ZE O9 H9 SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4ZE SMILES ACDLabs 12.01 Oc1ccc(N)cc1C
4ZE InChI InChI 1.03 InChI=1S/C7H9NO/c1-5-4-6(8)2-3-7(5)9/h2-4,9H,8H2,1H3
4ZE InChIKey InChI 1.03 HDGMAACKJSBLMW-UHFFFAOYSA-N
4ZE SMILES_CANONICAL CACTVS 3.385 Cc1cc(N)ccc1O
4ZE SMILES CACTVS 3.385 Cc1cc(N)ccc1O
4ZE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1cc(ccc1O)N
4ZE SMILES "OpenEye OEToolkits" 1.7.6 Cc1cc(ccc1O)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4ZE "SYSTEMATIC NAME" ACDLabs 12.01 4-amino-2-methylphenol
4ZE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4-azanyl-2-methyl-phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4ZE 'Create component' 2013-07-30 RCSB
4ZE 'Initial release' 2014-02-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4ZE C1 C 3.000 -1.500 1
4ZE C2 C 4.299 -0.750 2
4ZE C3 C 4.299 0.750 3
4ZE C4 C 5.598 1.500 4
4ZE N5 N 5.598 3.000 5
4ZE C6 C 6.897 0.750 6
4ZE C7 C 6.897 -0.750 7
4ZE C8 C 5.598 -1.500 8
4ZE O9 O 5.598 -3.000 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4ZE C1 C2 SINGLE NONE 1
4ZE C2 C3 DOUBLE NONE 2
4ZE C2 C8 SINGLE NONE 3
4ZE C3 C4 SINGLE NONE 4
4ZE O9 C8 SINGLE NONE 5
4ZE C8 C7 DOUBLE NONE 6
4ZE C4 N5 SINGLE NONE 7
4ZE C4 C6 DOUBLE NONE 8
4ZE C7 C6 SINGLE NONE 9
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4ZE MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4ZE phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4ZE C2 S1 1
4ZE C3 S1 1
4ZE C4 S1 1
4ZE C6 S1 1
4ZE C7 S1 1
4ZE C8 S1 1
4ZE C2 F1 1
4ZE C3 F1 1
4ZE C4 F1 1
4ZE C6 F1 1
4ZE C7 F1 1
4ZE C8 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4ZE
_pdbe_chem_comp_rdkit_properties.exactmw 123.068
_pdbe_chem_comp_rdkit_properties.amw 123.155
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 66.778
_pdbe_chem_comp_rdkit_properties.tpsa 46.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.385
_pdbe_chem_comp_rdkit_properties.CrippenMR 35.556
_pdbe_chem_comp_rdkit_properties.chi0v 4.355
_pdbe_chem_comp_rdkit_properties.chi1v 2.178
_pdbe_chem_comp_rdkit_properties.chi2v 0.765
_pdbe_chem_comp_rdkit_properties.chi3v 0.765
_pdbe_chem_comp_rdkit_properties.chi4v 0.385
_pdbe_chem_comp_rdkit_properties.chi0n 13.355
_pdbe_chem_comp_rdkit_properties.chi1n 6.480
_pdbe_chem_comp_rdkit_properties.chi2n 0.765
_pdbe_chem_comp_rdkit_properties.chi3n 0.765
_pdbe_chem_comp_rdkit_properties.chi4n 0.385
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.180
_pdbe_chem_comp_rdkit_properties.kappa1 1.286
_pdbe_chem_comp_rdkit_properties.kappa2 1.973
_pdbe_chem_comp_rdkit_properties.kappa3 1.134
_pdbe_chem_comp_rdkit_properties.Phi 0.282
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4ZE UniChem ZINC ZINC000001669677
4ZE UniChem eMolecules 489732
4ZE UniChem fdasrs CS8D10SY5L
4ZE UniChem SureChEMBL SCHEMBL33808
4ZE UniChem NMRShiftDB 20040422
4ZE UniChem ACTor 2835-96-3
4ZE UniChem Nikkaji J13.764B
4ZE UniChem BindingDb 50532262
4ZE UniChem 'EPA CompTox Dashboard' DTXSID2062662
4ZE UniChem ChemicalBook CB0681414
4ZE UniChem ChemicalBook CB7681413
4ZE UniChem CCDC MATBUF
4ZE UniChem 'PubChem TPHARMA' 15119870
4ZE UniChem PubChem 76081
4ZE UniChem Mcule MCULE-8949864692
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4ZE C1 -2.130 -1.246 -0.340 ETKDGv3 1
4ZE C2 -0.881 -0.444 -0.106 ETKDGv3 2
4ZE C3 0.317 -1.053 -0.035 ETKDGv3 3
4ZE C4 1.552 -0.260 0.163 ETKDGv3 4
4ZE N5 2.817 -0.921 0.253 ETKDGv3 5
4ZE C6 1.475 1.076 0.255 ETKDGv3 6
4ZE C7 0.167 1.754 0.156 ETKDGv3 7
4ZE C8 -0.955 1.038 -0.020 ETKDGv3 8
4ZE O9 -2.190 1.679 -0.125 ETKDGv3 9
4ZE H1 -1.990 -2.310 -0.051 ETKDGv3 10
4ZE H2 -2.403 -1.197 -1.415 ETKDGv3 11
4ZE H3 -2.966 -0.837 0.265 ETKDGv3 12
4ZE H4 0.391 -2.130 -0.122 ETKDGv3 13
4ZE H5 2.877 -1.961 0.181 ETKDGv3 14
4ZE H6 3.700 -0.380 0.392 ETKDGv3 15
4ZE H7 2.369 1.671 0.399 ETKDGv3 16
4ZE H8 0.126 2.834 0.221 ETKDGv3 17
4ZE H9 -2.276 2.688 -0.072 ETKDGv3 18
#