data_4VP
#
_chem_comp.id 4VP
_chem_comp.name 4-ethenylphenol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H8 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-01-29
_chem_comp.pdbx_modified_date 2015-05-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 120.149
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4VP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4S13
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4VP C2 C2 C 0 1 N N N N N N 208.714 -109.246 113.850 3.296 -0.576 0.014 C2 4VP 1
4VP C3 C3 C 0 1 N N N N N N 207.771 -109.920 113.168 2.484 0.473 0.011 C3 4VP 2
4VP "C1'" "C1'" C 0 1 Y N N N N N 208.233 -111.082 112.337 1.020 0.274 0.000 "C1'" 4VP 3
4VP "C6'" "C6'" C 0 1 Y N N N N N 209.584 -111.185 112.077 0.164 1.376 -0.003 "C6'" 4VP 4
4VP "C5'" "C5'" C 0 1 Y N N N N N 210.055 -112.235 111.320 -1.201 1.187 -0.013 "C5'" 4VP 5
4VP "C4'" "C4'" C 0 1 Y N N N N N 209.173 -113.173 110.824 -1.725 -0.099 -0.020 "C4'" 4VP 6
4VP "O4'" "O4'" O 0 1 N N N N N N 209.689 -114.229 110.066 -3.072 -0.282 -0.024 "O4'" 4VP 7
4VP "C3'" "C3'" C 0 1 Y N N N N N 207.817 -113.074 111.076 -0.877 -1.198 -0.016 "C3'" 4VP 8
4VP "C2'" "C2'" C 0 1 Y N N N N N 207.347 -112.018 111.841 0.489 -1.017 -0.013 "C2'" 4VP 9
4VP H1 H1 H 0 1 N N N N N N 209.748 -109.549 113.784 2.887 -1.576 0.009 H1 4VP 10
4VP H2 H2 H 0 1 N N N N N N 208.437 -108.402 114.464 4.366 -0.431 0.018 H2 4VP 11
4VP H3 H3 H 0 1 N N N N N N 206.729 -109.638 113.216 2.894 1.472 0.017 H3 4VP 12
4VP H4 H4 H 0 1 N N N N N N 210.269 -110.446 112.465 0.571 2.377 0.003 H4 4VP 13
4VP H5 H5 H 0 1 N N N N N N 211.112 -112.324 111.115 -1.864 2.039 -0.016 H5 4VP 14
4VP H6 H6 H 0 1 N N N N N N 210.632 -114.137 109.995 -3.464 -0.334 0.858 H6 4VP 15
4VP H7 H7 H 0 1 N N N N N N 207.133 -113.810 110.682 -1.289 -2.197 -0.021 H7 4VP 16
4VP H8 H8 H 0 1 N N N N N N 206.291 -111.927 112.049 1.148 -1.873 -0.010 H8 4VP 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4VP "O4'" "C4'" SING N N 1
4VP "C4'" "C3'" DOUB Y N 2
4VP "C4'" "C5'" SING Y N 3
4VP "C3'" "C2'" SING Y N 4
4VP "C5'" "C6'" DOUB Y N 5
4VP "C2'" "C1'" DOUB Y N 6
4VP "C6'" "C1'" SING Y N 7
4VP "C1'" C3 SING N N 8
4VP C3 C2 DOUB N N 9
4VP C2 H1 SING N N 10
4VP C2 H2 SING N N 11
4VP C3 H3 SING N N 12
4VP "C6'" H4 SING N N 13
4VP "C5'" H5 SING N N 14
4VP "O4'" H6 SING N N 15
4VP "C3'" H7 SING N N 16
4VP "C2'" H8 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4VP SMILES ACDLabs 12.01 Oc1ccc(\C=C)cc1
4VP InChI InChI 1.03 InChI=1S/C8H8O/c1-2-7-3-5-8(9)6-4-7/h2-6,9H,1H2
4VP InChIKey InChI 1.03 FUGYGGDSWSUORM-UHFFFAOYSA-N
4VP SMILES_CANONICAL CACTVS 3.385 Oc1ccc(C=C)cc1
4VP SMILES CACTVS 3.385 Oc1ccc(C=C)cc1
4VP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C=Cc1ccc(cc1)O
4VP SMILES "OpenEye OEToolkits" 1.7.6 C=Cc1ccc(cc1)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4VP "SYSTEMATIC NAME" ACDLabs 12.01 4-ethenylphenol
4VP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4-ethenylphenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4VP 'Create component' 2015-01-29 RCSB
4VP 'Initial release' 2015-05-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4VP C2 C 5.598 3.607 1
4VP C3 C 4.299 2.857 2
4VP "C1'" C 4.299 1.357 3
4VP "C6'" C 5.598 0.608 4
4VP "C5'" C 5.598 -0.892 5
4VP "C4'" C 4.299 -1.643 6
4VP "O4'" O 4.299 -3.143 7
4VP "C3'" C 3.000 -0.892 8
4VP "C2'" C 3.000 0.608 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4VP "O4'" "C4'" SINGLE NONE 1
4VP "C4'" "C3'" DOUBLE NONE 2
4VP "C4'" "C5'" SINGLE NONE 3
4VP "C3'" "C2'" SINGLE NONE 4
4VP "C5'" "C6'" DOUBLE NONE 5
4VP "C2'" "C1'" DOUBLE NONE 6
4VP "C6'" "C1'" SINGLE NONE 7
4VP "C1'" C3 SINGLE NONE 8
4VP C3 C2 DOUBLE NONE 9
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4VP MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4VP phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4VP "C1'" S1 1
4VP "C6'" S1 1
4VP "C5'" S1 1
4VP "C4'" S1 1
4VP "C3'" S1 1
4VP "C2'" S1 1
4VP "C1'" F1 1
4VP "C2'" F1 1
4VP "C3'" F1 1
4VP "C4'" F1 1
4VP "C5'" F1 1
4VP "C6'" F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4VP
_pdbe_chem_comp_rdkit_properties.exactmw 120.058
_pdbe_chem_comp_rdkit_properties.amw 120.151
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 65.592
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.518
_pdbe_chem_comp_rdkit_properties.CrippenMR 37.322
_pdbe_chem_comp_rdkit_properties.chi0v 4.408
_pdbe_chem_comp_rdkit_properties.chi1v 2.204
_pdbe_chem_comp_rdkit_properties.chi2v 0.727
_pdbe_chem_comp_rdkit_properties.chi3v 0.727
_pdbe_chem_comp_rdkit_properties.chi4v 0.364
_pdbe_chem_comp_rdkit_properties.chi0n 12.408
_pdbe_chem_comp_rdkit_properties.chi1n 6.112
_pdbe_chem_comp_rdkit_properties.chi2n 0.727
_pdbe_chem_comp_rdkit_properties.chi3n 0.727
_pdbe_chem_comp_rdkit_properties.chi4n 0.364
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.240
_pdbe_chem_comp_rdkit_properties.kappa1 1.428
_pdbe_chem_comp_rdkit_properties.kappa2 2.354
_pdbe_chem_comp_rdkit_properties.kappa3 1.323
_pdbe_chem_comp_rdkit_properties.Phi 0.374
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4VP UniChem ChEMBL CHEMBL349881
4VP UniChem PDBe 4VP
4VP UniChem 'KEGG LIGAND' C05627
4VP UniChem ChEBI 1883
4VP UniChem ZINC ZINC000000895826
4VP UniChem fdasrs OA7V1SM8YL
4VP UniChem HMDB HMDB0004072
4VP UniChem 'PubChem TPHARMA' 14891470
4VP UniChem NMRShiftDB 60019131
4VP UniChem ACTor 24979-70-2
4VP UniChem ACTor 2628-17-3
4VP UniChem BindingDb 50017833
4VP UniChem 'EPA CompTox Dashboard' DTXSID7073301
4VP UniChem MetaboLights MTBLC1883
4VP UniChem BRENDA 190386
4VP UniChem BRENDA 29571
4VP UniChem Rhea 1883
4VP UniChem ChemicalBook CB3362136
4VP UniChem ChemicalBook CB6130459
4VP UniChem MedChemExpress HY-W005288
4VP UniChem Nikkaji J38.247G
4VP UniChem eMolecules 507864
4VP UniChem SureChEMBL SCHEMBL59328
4VP UniChem PubChem 62453
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4VP C2 -1.286 -2.632 -1.144 ETKDGv3 1
4VP C3 -1.560 -1.414 -0.673 ETKDGv3 2
4VP "C1'" -0.537 -0.435 -0.228 ETKDGv3 3
4VP "C6'" -0.984 0.711 0.605 ETKDGv3 4
4VP "C5'" -0.106 1.631 1.023 ETKDGv3 5
4VP "C4'" 1.321 1.519 0.654 ETKDGv3 6
4VP "O4'" 2.240 2.471 1.087 ETKDGv3 7
4VP "C3'" 1.732 0.495 -0.104 ETKDGv3 8
4VP "C2'" 0.765 -0.522 -0.571 ETKDGv3 9
4VP H1 -2.097 -3.288 -1.433 ETKDGv3 10
4VP H2 -0.277 -3.011 -1.227 ETKDGv3 11
4VP H3 -2.603 -1.139 -0.574 ETKDGv3 12
4VP H4 -2.026 0.806 0.883 ETKDGv3 13
4VP H5 -0.444 2.460 1.633 ETKDGv3 14
4VP H6 1.951 3.255 1.661 ETKDGv3 15
4VP H7 2.774 0.407 -0.383 ETKDGv3 16
4VP H8 1.136 -1.313 -1.207 ETKDGv3 17
#