data_4T7
#
_chem_comp.id 4T7
_chem_comp.name (1R)-1-(naphthalen-2-yl)ethane-1,2-diol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H12 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-05-21
_chem_comp.pdbx_modified_date 2015-06-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 188.222
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4T7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4ZXW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4T7 CAI C1 C 0 1 Y N N N N N -23.799 20.189 -3.246 -0.000 0.874 0.389 CAI 4T7 1
4T7 CAM C2 C 0 1 Y N N N N N -23.457 20.472 -4.576 -1.358 0.578 0.179 CAM 4T7 2
4T7 CAG C3 C 0 1 Y N N N N N -22.259 21.121 -4.867 -2.348 1.568 0.304 CAG 4T7 3
4T7 CAD C4 C 0 1 Y N N N N N -21.893 21.378 -6.195 -3.653 1.245 0.092 CAD 4T7 4
4T7 CAC C5 C 0 1 Y N N N N N -22.723 20.981 -7.245 -4.025 -0.054 -0.247 CAC 4T7 5
4T7 CAF C6 C 0 1 Y N N N N N -23.922 20.325 -6.954 -3.094 -1.038 -0.377 CAF 4T7 6
4T7 CAL C7 C 0 1 Y N N N N N -24.277 20.054 -5.620 -1.736 -0.743 -0.166 CAL 4T7 7
4T7 CAH C8 C 0 1 Y N N N N N -25.471 19.396 -5.314 -0.746 -1.732 -0.292 CAH 4T7 8
4T7 CAE C9 C 0 1 Y N N N N N -25.812 19.155 -3.985 0.559 -1.410 -0.081 CAE 4T7 9
4T7 CAK C10 C 0 1 Y N N N N N -24.988 19.525 -2.921 0.931 -0.111 0.259 CAK 4T7 10
4T7 CAN C11 C 0 1 N N R N N N -25.392 19.240 -1.548 2.387 0.211 0.478 CAN 4T7 11
4T7 OAB O1 O 0 1 N N N N N N -24.326 18.776 -0.680 3.036 -0.908 1.085 OAB 4T7 12
4T7 CAJ C12 C 0 1 N N N N N N -26.035 20.456 -0.855 3.050 0.518 -0.867 CAJ 4T7 13
4T7 OAA O2 O 0 1 N N N N N N -26.426 20.135 0.494 4.399 0.936 -0.648 OAA 4T7 14
4T7 H1 H1 H 0 1 N N N N N N -23.130 20.490 -2.454 0.303 1.877 0.648 H1 4T7 15
4T7 H2 H2 H 0 1 N N N N N N -21.607 21.428 -4.063 -2.075 2.579 0.566 H2 4T7 16
4T7 H3 H3 H 0 1 N N N N N N -20.964 21.886 -6.407 -4.412 2.007 0.189 H3 4T7 17
4T7 H4 H4 H 0 1 N N N N N N -22.442 21.178 -8.269 -5.068 -0.284 -0.409 H4 4T7 18
4T7 H5 H5 H 0 1 N N N N N N -24.579 20.025 -7.757 -3.397 -2.041 -0.640 H5 4T7 19
4T7 H6 H6 H 0 1 N N N N N N -26.129 19.074 -6.107 -1.020 -2.744 -0.554 H6 4T7 20
4T7 H7 H7 H 0 1 N N N N N N -26.749 18.663 -3.770 1.318 -2.172 -0.178 H7 4T7 21
4T7 H8 H8 H 0 1 N N N N N N -26.161 18.454 -1.584 2.472 1.079 1.132 H8 4T7 22
4T7 H9 H9 H 0 1 N N N N N N -24.673 18.615 0.190 2.999 -1.717 0.557 H9 4T7 23
4T7 H10 H10 H 0 1 N N N N N N -25.309 21.282 -0.832 3.043 -0.378 -1.488 H10 4T7 24
4T7 H11 H11 H 0 1 N N N N N N -26.925 20.765 -1.423 2.500 1.313 -1.370 H11 4T7 25
4T7 H12 H12 H 0 1 N N N N N N -26.819 20.898 0.900 4.881 1.148 -1.459 H12 4T7 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4T7 CAC CAF DOUB Y N 1
4T7 CAC CAD SING Y N 2
4T7 CAF CAL SING Y N 3
4T7 CAD CAG DOUB Y N 4
4T7 CAL CAH DOUB Y N 5
4T7 CAL CAM SING Y N 6
4T7 CAH CAE SING Y N 7
4T7 CAG CAM SING Y N 8
4T7 CAM CAI DOUB Y N 9
4T7 CAE CAK DOUB Y N 10
4T7 CAI CAK SING Y N 11
4T7 CAK CAN SING N N 12
4T7 CAN CAJ SING N N 13
4T7 CAN OAB SING N N 14
4T7 CAJ OAA SING N N 15
4T7 CAI H1 SING N N 16
4T7 CAG H2 SING N N 17
4T7 CAD H3 SING N N 18
4T7 CAC H4 SING N N 19
4T7 CAF H5 SING N N 20
4T7 CAH H6 SING N N 21
4T7 CAE H7 SING N N 22
4T7 CAN H8 SING N N 23
4T7 OAB H9 SING N N 24
4T7 CAJ H10 SING N N 25
4T7 CAJ H11 SING N N 26
4T7 OAA H12 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4T7 SMILES ACDLabs 12.01 c1c(ccc2c1cccc2)C(CO)O
4T7 InChI InChI 1.03 InChI=1S/C12H12O2/c13-8-12(14)11-6-5-9-3-1-2-4-10(9)7-11/h1-7,12-14H,8H2/t12-/m0/s1
4T7 InChIKey InChI 1.03 QFNOPZNUHSDHKZ-LBPRGKRZSA-N
4T7 SMILES_CANONICAL CACTVS 3.385 OC[C@H](O)c1ccc2ccccc2c1
4T7 SMILES CACTVS 3.385 OC[CH](O)c1ccc2ccccc2c1
4T7 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc2cc(ccc2c1)[C@H](CO)O
4T7 SMILES "OpenEye OEToolkits" 1.9.2 c1ccc2cc(ccc2c1)C(CO)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4T7 "SYSTEMATIC NAME" ACDLabs 12.01 (1R)-1-(naphthalen-2-yl)ethane-1,2-diol
4T7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (1R)-1-naphthalen-2-ylethane-1,2-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4T7 'Create component' 2015-05-21 RCSB
4T7 'Initial release' 2015-06-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
4T7 CAI C 9.002 -0.543 1
4T7 CAM C 10.301 0.206 2
4T7 CAG C 11.642 -0.596 3
4T7 CAD C 13.001 0.175 4
4T7 CAC C 13.001 1.738 5
4T7 CAF C 11.642 2.508 6
4T7 CAL C 10.301 1.707 7
4T7 CAH C 9.002 2.457 8
4T7 CAE C 7.702 1.707 9
4T7 CAK C 7.702 0.206 10
4T7 CAN C 6.404 -0.543 11
4T7 OAB O 6.404 -2.043 12
4T7 CAJ C 5.104 0.206 13
4T7 OAA O 3.805 -0.543 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
4T7 CAC CAF DOUBLE NONE 1
4T7 CAC CAD SINGLE NONE 2
4T7 CAF CAL SINGLE NONE 3
4T7 CAD CAG DOUBLE NONE 4
4T7 CAL CAH DOUBLE NONE 5
4T7 CAL CAM SINGLE NONE 6
4T7 CAH CAE SINGLE NONE 7
4T7 CAG CAM SINGLE NONE 8
4T7 CAM CAI DOUBLE NONE 9
4T7 CAE CAK DOUBLE NONE 10
4T7 CAI CAK SINGLE NONE 11
4T7 CAK CAN SINGLE NONE 12
4T7 CAN CAJ SINGLE NONE 13
4T7 CAN OAB SINGLE BEGINWEDGE 14
4T7 CAJ OAA SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
4T7 MurckoScaffold S1 scaffold c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
4T7 napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
4T7 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
4T7 Z335245116 F3 fragment CC(O)c1ccc2ccccc2c1 InChI=1S/C12H12O/c1-9(13)11-7-6-10-4-2-3-5-12(10)8-11/h2-9,13H,1H3 AXRKCRWZRKETCK-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
4T7 CAI S1 1
4T7 CAM S1 1
4T7 CAG S1 1
4T7 CAD S1 1
4T7 CAC S1 1
4T7 CAF S1 1
4T7 CAL S1 1
4T7 CAH S1 1
4T7 CAE S1 1
4T7 CAK S1 1
4T7 CAD F1 1
4T7 CAC F1 1
4T7 CAF F1 1
4T7 CAL F1 1
4T7 CAM F1 1
4T7 CAG F1 1
4T7 CAI F1 1
4T7 CAK F1 1
4T7 CAE F1 1
4T7 CAH F1 1
4T7 CAI F2 1
4T7 CAM F2 1
4T7 CAL F2 1
4T7 CAH F2 1
4T7 CAE F2 1
4T7 CAK F2 1
4T7 CAM F2 2
4T7 CAL F2 2
4T7 CAF F2 2
4T7 CAC F2 2
4T7 CAD F2 2
4T7 CAG F2 2
4T7 CAJ F3 1
4T7 CAN F3 1
4T7 OAB F3 1
4T7 CAK F3 1
4T7 CAE F3 1
4T7 CAH F3 1
4T7 CAL F3 1
4T7 CAF F3 1
4T7 CAC F3 1
4T7 CAD F3 1
4T7 CAG F3 1
4T7 CAM F3 1
4T7 CAI F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 4T7
_pdbe_chem_comp_rdkit_properties.exactmw 188.084
_pdbe_chem_comp_rdkit_properties.amw 188.226
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.167
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 99.464
_pdbe_chem_comp_rdkit_properties.tpsa 40.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.382
_pdbe_chem_comp_rdkit_properties.CrippenMR 53.522
_pdbe_chem_comp_rdkit_properties.chi0v 6.816
_pdbe_chem_comp_rdkit_properties.chi1v 3.658
_pdbe_chem_comp_rdkit_properties.chi2v 1.570
_pdbe_chem_comp_rdkit_properties.chi3v 1.570
_pdbe_chem_comp_rdkit_properties.chi4v 0.946
_pdbe_chem_comp_rdkit_properties.chi0n 18.816
_pdbe_chem_comp_rdkit_properties.chi1n 9.475
_pdbe_chem_comp_rdkit_properties.chi2n 1.570
_pdbe_chem_comp_rdkit_properties.chi3n 1.570
_pdbe_chem_comp_rdkit_properties.chi4n 0.946
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.380
_pdbe_chem_comp_rdkit_properties.kappa1 2.596
_pdbe_chem_comp_rdkit_properties.kappa2 3.780
_pdbe_chem_comp_rdkit_properties.kappa3 1.621
_pdbe_chem_comp_rdkit_properties.Phi 0.701
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
4T7 UniChem ZINC ZINC000000403247
4T7 UniChem eMolecules 28203890
4T7 UniChem 'PubChem TPHARMA' 16094071
4T7 UniChem PubChem 11030568
4T7 UniChem Nikkaji J723.204G
4T7 UniChem 'EPA CompTox Dashboard' DTXSID20452542
4T7 UniChem SureChEMBL SCHEMBL6543395
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
4T7 CAI 0.035 0.810 0.410 ETKDGv3 1
4T7 CAM -1.246 0.415 0.457 ETKDGv3 2
4T7 CAG -2.271 1.190 1.183 ETKDGv3 3
4T7 CAD -3.542 0.768 1.210 ETKDGv3 4
4T7 CAC -3.960 -0.476 0.521 ETKDGv3 5
4T7 CAF -3.084 -1.231 -0.155 ETKDGv3 6
4T7 CAL -1.664 -0.832 -0.230 ETKDGv3 7
4T7 CAH -0.760 -1.567 -0.893 ETKDGv3 8
4T7 CAE 0.652 -1.134 -0.940 ETKDGv3 9
4T7 CAK 1.039 0.005 -0.334 ETKDGv3 10
4T7 CAN 2.490 0.433 -0.354 ETKDGv3 11
4T7 OAB 2.585 1.816 -0.574 ETKDGv3 12
4T7 CAJ 3.161 0.081 0.979 ETKDGv3 13
4T7 OAA 4.513 0.450 0.960 ETKDGv3 14
4T7 H1 0.344 1.717 0.916 ETKDGv3 15
4T7 H2 -2.002 2.105 1.698 ETKDGv3 16
4T7 H3 -4.284 1.345 1.745 ETKDGv3 17
4T7 H4 -4.998 -0.779 0.569 ETKDGv3 18
4T7 H5 -3.424 -2.135 -0.646 ETKDGv3 19
4T7 H6 -1.051 -2.482 -1.395 ETKDGv3 20
4T7 H7 1.368 -1.750 -1.469 ETKDGv3 21
4T7 H8 3.038 -0.102 -1.167 ETKDGv3 22
4T7 H9 2.352 1.971 -1.526 ETKDGv3 23
4T7 H10 3.064 -1.011 1.182 ETKDGv3 24
4T7 H11 2.658 0.626 1.807 ETKDGv3 25
4T7 H12 4.987 -0.232 0.415 ETKDGv3 26
#