data_3RQ
#
_chem_comp.id 3RQ
_chem_comp.name 4-(2,4-dichloro-5-methoxyphenyl)-2-methyl-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H10 Cl2 N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-04-26
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 333.172
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3RQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3RLQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3RQ N1 N1 N 0 1 Y N N N N N 17.574 -2.251 49.855 -3.962 -0.295 0.531 N1 3RQ 1
3RQ N3 N3 N 0 1 Y N N N N N 17.521 0.057 49.146 -3.811 1.957 -0.513 N3 3RQ 2
3RQ C4 C4 C 0 1 Y N N N N N 12.583 -1.220 51.121 0.823 -1.506 -0.479 C4 3RQ 3
3RQ C5 C5 C 0 1 Y N N N N N 11.364 -1.126 51.828 2.200 -1.563 -0.583 C5 3RQ 4
3RQ C6 C6 C 0 1 Y N N N N N 11.335 -1.310 53.226 2.981 -0.567 -0.025 C6 3RQ 5
3RQ C7 C7 C 0 1 N N N N N N 13.531 -2.016 56.154 2.481 2.535 1.863 C7 3RQ 6
3RQ C8 C8 C 0 1 Y N N N N N 15.105 -1.643 51.122 -1.256 -0.377 0.305 C8 3RQ 7
3RQ C10 C10 C 0 1 N N N N N N 17.408 -4.543 50.703 -3.986 -2.504 1.544 C10 3RQ 8
3RQ C13 C13 C 0 1 Y N N N N N 15.618 0.769 50.059 -1.599 2.030 -0.762 C13 3RQ 9
3RQ C15 C15 C 0 1 N N N N N N 14.552 1.652 50.427 -0.281 2.478 -1.095 C15 3RQ 10
3RQ C2 C2 C 0 1 Y N N N N N 13.768 -1.687 53.229 1.008 0.562 0.753 C2 3RQ 11
3RQ C14 C14 C 0 1 Y N N N N N 16.697 1.147 49.293 -2.767 2.707 -0.958 C14 3RQ 12
3RQ C12 C12 C 0 1 Y N N N N N 15.784 -0.613 50.396 -1.963 0.748 -0.140 C12 3RQ 13
3RQ C3 C3 C 0 1 Y N N N N N 13.820 -1.511 51.813 0.219 -0.441 0.191 C3 3RQ 14
3RQ C1 C1 C 0 1 Y N N N N N 12.533 -1.588 53.962 2.386 0.496 0.644 C1 3RQ 15
3RQ C11 C11 C 0 1 Y N N N N N 16.994 -1.014 49.804 -3.365 0.763 -0.010 C11 3RQ 16
3RQ C9 C9 C 0 1 Y N N N N N 16.852 -3.152 50.575 -3.259 -1.331 0.937 C9 3RQ 17
3RQ N4 N4 N 0 1 N N N N N N 13.686 2.345 50.755 0.765 2.834 -1.359 N4 3RQ 18
3RQ N2 N2 N 0 1 Y N N N N N 15.667 -2.909 51.196 -1.946 -1.387 0.834 N2 3RQ 19
3RQ O1 O1 O 0 1 N N N N N N 12.387 -1.739 55.334 3.158 1.472 1.191 O1 3RQ 20
3RQ CL2 CL2 CL 0 0 N N N N N N 12.500 -0.969 49.402 -0.154 -2.754 -1.186 CL2 3RQ 21
3RQ CL1 CL1 CL 0 0 N N N N N N 9.798 -1.184 53.998 4.710 -0.647 -0.159 CL1 3RQ 22
3RQ H5 H5 H 0 1 N N N N N N 10.449 -0.912 51.295 2.667 -2.387 -1.101 H5 3RQ 23
3RQ H7 H7 H 0 1 N N N N N N 13.218 -2.101 57.205 3.212 3.244 2.252 H7 3RQ 24
3RQ H7A H7A H 0 1 N N N N N N 13.993 -2.961 55.832 1.819 3.044 1.163 H7A 3RQ 25
3RQ H7B H7B H 0 1 N N N N N N 14.260 -1.198 56.054 1.895 2.129 2.688 H7B 3RQ 26
3RQ H10 H10 H 0 1 N N N N N N 18.363 -4.608 50.162 -4.252 -3.212 0.759 H10 3RQ 27
3RQ H10A H10A H 0 0 N N N N N N 17.572 -4.776 51.765 -3.341 -2.994 2.273 H10A 3RQ 28
3RQ H10B H10B H 0 0 N N N N N N 16.695 -5.263 50.276 -4.892 -2.153 2.039 H10B 3RQ 29
3RQ H2 H2 H 0 1 N N N N N N 14.681 -1.900 53.765 0.545 1.389 1.272 H2 3RQ 30
3RQ H14 H14 H 0 1 N N N N N N 16.867 2.130 48.879 -2.850 3.689 -1.399 H14 3RQ 31
3RQ HN3 HN3 H 0 1 N N N N N N 18.379 0.051 48.633 -4.741 2.230 -0.548 HN3 3RQ 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3RQ C11 N1 DOUB Y N 1
3RQ N1 C9 SING Y N 2
3RQ N3 C14 SING Y N 3
3RQ N3 C11 SING Y N 4
3RQ CL2 C4 SING N N 5
3RQ C4 C3 DOUB Y N 6
3RQ C4 C5 SING Y N 7
3RQ C5 C6 DOUB Y N 8
3RQ C5 H5 SING N N 9
3RQ C6 C1 SING Y N 10
3RQ C6 CL1 SING N N 11
3RQ O1 C7 SING N N 12
3RQ C7 H7 SING N N 13
3RQ C7 H7A SING N N 14
3RQ C7 H7B SING N N 15
3RQ C12 C8 DOUB Y N 16
3RQ C8 N2 SING Y N 17
3RQ C8 C3 SING Y N 18
3RQ C9 C10 SING N N 19
3RQ C10 H10 SING N N 20
3RQ C10 H10A SING N N 21
3RQ C10 H10B SING N N 22
3RQ C14 C13 DOUB Y N 23
3RQ C13 C12 SING Y N 24
3RQ C13 C15 SING N N 25
3RQ C15 N4 TRIP N N 26
3RQ C3 C2 SING Y N 27
3RQ C2 C1 DOUB Y N 28
3RQ C2 H2 SING N N 29
3RQ C14 H14 SING N N 30
3RQ C11 C12 SING Y N 31
3RQ C1 O1 SING N N 32
3RQ C9 N2 DOUB Y N 33
3RQ N3 HN3 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3RQ SMILES ACDLabs 12.01 "Clc3c(OC)cc(c1nc(nc2c1c(C#N)cn2)C)c(Cl)c3"
3RQ SMILES_CANONICAL CACTVS 3.370 "COc1cc(c(Cl)cc1Cl)c2nc(C)nc3[nH]cc(C#N)c23"
3RQ SMILES CACTVS 3.370 "COc1cc(c(Cl)cc1Cl)c2nc(C)nc3[nH]cc(C#N)c23"
3RQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1nc(c2c(c[nH]c2n1)C#N)c3cc(c(cc3Cl)Cl)OC"
3RQ SMILES "OpenEye OEToolkits" 1.7.2 "Cc1nc(c2c(c[nH]c2n1)C#N)c3cc(c(cc3Cl)Cl)OC"
3RQ InChI InChI 1.03 InChI=1S/C15H10Cl2N4O/c1-7-20-14(13-8(5-18)6-19-15(13)21-7)9-3-12(22-2)11(17)4-10(9)16/h3-4,6H,1-2H3,(H,19,20,21)
3RQ InChIKey InChI 1.03 XQAFNWQVIXKAPE-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3RQ "SYSTEMATIC NAME" ACDLabs 12.01 4-(2,4-dichloro-5-methoxyphenyl)-2-methyl-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile
3RQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 4-[2,4-bis(chloranyl)-5-methoxy-phenyl]-2-methyl-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3RQ 'Create component' 2011-04-26 RCSB
3RQ 'Modify aromatic_flag' 2011-06-04 RCSB
3RQ 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3RQ N1 N 5.598 -4.205 1
3RQ N3 N 8.316 -3.912 2
3RQ C4 C 4.299 1.046 3
3RQ C5 C 4.299 2.546 4
3RQ C6 C 5.598 3.296 5
3RQ C7 C 9.495 2.546 6
3RQ C8 C 5.598 -1.204 7
3RQ C10 C 3.000 -4.205 8
3RQ C13 C 8.316 -1.497 9
3RQ C15 C 8.783 -0.072 10
3RQ C2 C 6.897 1.046 11
3RQ C14 C 9.192 -2.704 12
3RQ C12 C 6.897 -1.954 13
3RQ C3 C 5.598 0.295 14
3RQ C1 C 6.897 2.546 15
3RQ C11 C 6.897 -3.454 16
3RQ C9 C 4.299 -3.454 17
3RQ N4 N 9.248 1.354 18
3RQ N2 N 4.299 -1.954 19
3RQ O1 O 8.196 3.296 20
3RQ CL2 Cl 3.000 0.295 21
3RQ CL1 Cl 5.598 4.795 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3RQ C11 N1 DOUBLE NONE 1
3RQ N1 C9 SINGLE NONE 2
3RQ N3 C14 SINGLE NONE 3
3RQ N3 C11 SINGLE NONE 4
3RQ CL2 C4 SINGLE NONE 5
3RQ C4 C3 DOUBLE NONE 6
3RQ C4 C5 SINGLE NONE 7
3RQ C5 C6 DOUBLE NONE 8
3RQ C6 C1 SINGLE NONE 9
3RQ C6 CL1 SINGLE NONE 10
3RQ O1 C7 SINGLE NONE 11
3RQ C12 C8 DOUBLE NONE 12
3RQ C8 N2 SINGLE NONE 13
3RQ C8 C3 SINGLE NONE 14
3RQ C9 C10 SINGLE NONE 15
3RQ C14 C13 DOUBLE NONE 16
3RQ C13 C12 SINGLE NONE 17
3RQ C13 C15 SINGLE NONE 18
3RQ C15 N4 TRIPLE NONE 19
3RQ C3 C2 SINGLE NONE 20
3RQ C2 C1 DOUBLE NONE 21
3RQ C11 C12 SINGLE NONE 22
3RQ C1 O1 SINGLE NONE 23
3RQ C9 N2 DOUBLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3RQ MurckoScaffold S1 scaffold 'c1ccc(-c2ncnc3[nH]ccc23)cc1' InChI=1S/C12H9N3/c1-2-4-9(5-3-1)11-10-6-7-13-12(10)15-8-14-11/h1-8H,(H,13,14,15) XWMVYDXYOLGHBU-UHFFFAOYSA-N
3RQ phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
3RQ pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
3RQ pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3RQ N1 S1 1
3RQ N3 S1 1
3RQ C4 S1 1
3RQ C5 S1 1
3RQ C6 S1 1
3RQ C8 S1 1
3RQ C13 S1 1
3RQ C2 S1 1
3RQ C14 S1 1
3RQ C12 S1 1
3RQ C3 S1 1
3RQ C1 S1 1
3RQ C11 S1 1
3RQ C9 S1 1
3RQ N2 S1 1
3RQ C4 F1 1
3RQ C3 F1 1
3RQ C2 F1 1
3RQ C1 F1 1
3RQ C6 F1 1
3RQ C5 F1 1
3RQ C12 F2 1
3RQ C8 F2 1
3RQ N2 F2 1
3RQ C9 F2 1
3RQ N1 F2 1
3RQ C11 F2 1
3RQ C14 F3 1
3RQ C13 F3 1
3RQ C12 F3 1
3RQ C11 F3 1
3RQ N3 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 3RQ
_pdbe_chem_comp_rdkit_properties.exactmw 332.023
_pdbe_chem_comp_rdkit_properties.amw 333.178
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.133
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 150.134
_pdbe_chem_comp_rdkit_properties.tpsa 74.590
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.740
_pdbe_chem_comp_rdkit_properties.CrippenMR 80.679
_pdbe_chem_comp_rdkit_properties.chi0v 11.965
_pdbe_chem_comp_rdkit_properties.chi1v 6.357
_pdbe_chem_comp_rdkit_properties.chi2v 3.291
_pdbe_chem_comp_rdkit_properties.chi3v 3.291
_pdbe_chem_comp_rdkit_properties.chi4v 2.319
_pdbe_chem_comp_rdkit_properties.chi0n 20.453
_pdbe_chem_comp_rdkit_properties.chi1n 10.549
_pdbe_chem_comp_rdkit_properties.chi2n 2.741
_pdbe_chem_comp_rdkit_properties.chi3n 2.741
_pdbe_chem_comp_rdkit_properties.chi4n 1.859
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.290
_pdbe_chem_comp_rdkit_properties.kappa1 6.862
_pdbe_chem_comp_rdkit_properties.kappa2 5.485
_pdbe_chem_comp_rdkit_properties.kappa3 2.266
_pdbe_chem_comp_rdkit_properties.Phi 1.711
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3RQ UniChem ZINC ZINC000066167054
3RQ UniChem PubChem 52940059
3RQ UniChem BindingDb 50483920
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3RQ N1 -3.412 0.238 -1.010 ETKDGv3 1
3RQ N3 -2.835 2.558 -0.615 ETKDGv3 2
3RQ C4 0.521 -1.569 1.712 ETKDGv3 3
3RQ C5 1.860 -1.933 2.219 ETKDGv3 4
3RQ C6 2.963 -1.483 1.609 ETKDGv3 5
3RQ C7 4.092 0.689 -1.334 ETKDGv3 6
3RQ C8 -0.911 -0.399 0.082 ETKDGv3 7
3RQ C10 -3.881 -2.234 -1.369 ETKDGv3 8
3RQ C13 -0.770 2.178 0.335 ETKDGv3 9
3RQ C15 0.458 2.439 1.038 ETKDGv3 10
3RQ C2 1.633 -0.289 -0.053 ETKDGv3 11
3RQ C14 -1.664 3.118 -0.004 ETKDGv3 12
3RQ C12 -1.314 0.872 -0.043 ETKDGv3 13
3RQ C3 0.407 -0.769 0.631 ETKDGv3 14
3RQ C1 2.855 -0.617 0.412 ETKDGv3 15
3RQ C11 -2.594 1.164 -0.614 ETKDGv3 16
3RQ C9 -2.994 -1.140 -0.879 ETKDGv3 17
3RQ N4 1.445 2.649 1.604 ETKDGv3 18
3RQ N2 -1.816 -1.428 -0.377 ETKDGv3 19
3RQ O1 4.038 -0.167 -0.197 ETKDGv3 20
3RQ CL2 -0.887 -2.167 2.585 ETKDGv3 21
3RQ CL1 4.543 -1.926 2.234 ETKDGv3 22
3RQ H5 1.944 -2.566 3.093 ETKDGv3 23
3RQ H7 3.605 0.200 -2.204 ETKDGv3 24
3RQ H7A 3.594 1.655 -1.108 ETKDGv3 25
3RQ H7B 5.154 0.888 -1.588 ETKDGv3 26
3RQ H10 -3.574 -2.528 -2.394 ETKDGv3 27
3RQ H10A -3.808 -3.116 -0.697 ETKDGv3 28
3RQ H10B -4.936 -1.890 -1.390 ETKDGv3 29
3RQ H2 1.522 0.334 -0.931 ETKDGv3 30
3RQ H14 -1.542 4.176 0.185 ETKDGv3 31
3RQ HN3 -3.693 3.061 -0.931 ETKDGv3 32
#