data_3HO
#
_chem_comp.id 3HO
_chem_comp.name "(3S)-3-hydroxyoctanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H16 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-11-05
_chem_comp.pdbx_modified_date 2012-04-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 160.211
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3HO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3F24
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3HO O1 O1 O 0 1 N N N N N N 15.973 -4.619 1.151 3.212 -0.974 -0.612 O1 3HO 1
3HO C1 C1 C 0 1 N N N N N N 16.298 -5.822 1.188 3.231 0.149 -0.166 C1 3HO 2
3HO O2 O2 O 0 1 N N N N N N 15.853 -6.554 2.088 4.401 0.791 -0.015 O2 3HO 3
3HO C2 C2 C 0 1 N N N N N N 17.222 -6.317 0.111 1.943 0.832 0.213 C2 3HO 4
3HO C3 C3 C 0 1 N N S N N N 18.614 -6.545 0.688 0.767 -0.108 -0.063 C3 3HO 5
3HO O3 O3 O 0 1 N N N N N N 19.199 -7.606 -0.106 0.858 -1.248 0.794 O3 3HO 6
3HO C4 C4 C 0 1 N N N N N N 19.401 -5.248 0.565 -0.548 0.628 0.204 C4 3HO 7
3HO C5 C5 C 0 1 N N N N N N 20.864 -5.435 0.928 -1.723 -0.269 -0.190 C5 3HO 8
3HO C6 C6 C 0 1 N N N N N N 21.606 -4.126 0.796 -3.037 0.467 0.077 C6 3HO 9
3HO C7 C7 C 0 1 N N N N N N 23.064 -4.336 1.153 -4.213 -0.430 -0.317 C7 3HO 10
3HO C8 C8 C 0 1 N N N N N N 23.811 -3.028 1.013 -5.528 0.306 -0.051 C8 3HO 11
3HO HO2 HO2 H 0 1 N N N N N N 15.287 -6.047 2.658 5.200 0.314 -0.276 HO2 3HO 12
3HO H2 H2 H 0 1 N N N N N N 16.836 -7.264 -0.294 1.964 1.086 1.273 H2 3HO 13
3HO H2A H2A H 0 1 N N N N N N 17.280 -5.566 -0.691 1.826 1.742 -0.376 H2A 3HO 14
3HO H3 H3 H 0 1 N N N N N N 18.606 -6.829 1.751 0.798 -0.432 -1.103 H3 3HO 15
3HO HO3 HO3 H 0 1 N N N N N N 19.327 -7.302 -0.997 0.837 -1.034 1.737 HO3 3HO 16
3HO H4 H4 H 0 1 N N N N N N 19.339 -4.896 -0.475 -0.618 0.874 1.264 H4 3HO 17
3HO H4A H4A H 0 1 N N N N N N 18.967 -4.517 1.263 -0.577 1.545 -0.385 H4A 3HO 18
3HO H5 H5 H 0 1 N N N N N N 20.937 -5.790 1.967 -1.653 -0.515 -1.250 H5 3HO 19
3HO H5A H5A H 0 1 N N N N N N 21.312 -6.172 0.245 -1.694 -1.186 0.398 H5A 3HO 20
3HO H6 H6 H 0 1 N N N N N N 21.530 -3.764 -0.240 -3.108 0.713 1.136 H6 3HO 21
3HO H6A H6A H 0 1 N N N N N N 21.164 -3.383 1.476 -3.067 1.384 -0.512 H6A 3HO 22
3HO H7 H7 H 0 1 N N N N N N 23.140 -4.692 2.191 -4.143 -0.676 -1.377 H7 3HO 23
3HO H7A H7A H 0 1 N N N N N N 23.503 -5.083 0.476 -4.184 -1.347 0.271 H7A 3HO 24
3HO H8 H8 H 0 1 N N N N N N 23.992 -2.600 2.010 -5.598 0.552 1.009 H8 3HO 25
3HO H8A H8A H 0 1 N N N N N N 24.773 -3.207 0.511 -5.557 1.223 -0.639 H8A 3HO 26
3HO H8B H8B H 0 1 N N N N N N 23.211 -2.325 0.416 -6.365 -0.333 -0.331 H8B 3HO 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3HO O1 C1 DOUB N N 1
3HO C2 C1 SING N N 2
3HO C1 O2 SING N N 3
3HO O2 HO2 SING N N 4
3HO C2 C3 SING N N 5
3HO C2 H2 SING N N 6
3HO C2 H2A SING N N 7
3HO O3 C3 SING N N 8
3HO C4 C3 SING N N 9
3HO C3 H3 SING N N 10
3HO O3 HO3 SING N N 11
3HO C4 C5 SING N N 12
3HO C4 H4 SING N N 13
3HO C4 H4A SING N N 14
3HO C6 C5 SING N N 15
3HO C5 H5 SING N N 16
3HO C5 H5A SING N N 17
3HO C6 C7 SING N N 18
3HO C6 H6 SING N N 19
3HO C6 H6A SING N N 20
3HO C8 C7 SING N N 21
3HO C7 H7 SING N N 22
3HO C7 H7A SING N N 23
3HO C8 H8 SING N N 24
3HO C8 H8A SING N N 25
3HO C8 H8B SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3HO SMILES ACDLabs 10.04 O=C(O)CC(O)CCCCC
3HO SMILES_CANONICAL CACTVS 3.341 CCCCC[C@H](O)CC(O)=O
3HO SMILES CACTVS 3.341 CCCCC[CH](O)CC(O)=O
3HO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCC[C@@H](CC(=O)O)O
3HO SMILES "OpenEye OEToolkits" 1.5.0 CCCCCC(CC(=O)O)O
3HO InChI InChI 1.03 InChI=1S/C8H16O3/c1-2-3-4-5-7(9)6-8(10)11/h7,9H,2-6H2,1H3,(H,10,11)/t7-/m0/s1
3HO InChIKey InChI 1.03 NDPLAKGOSZHTPH-ZETCQYMHSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3HO "SYSTEMATIC NAME" ACDLabs 10.04 "(3S)-3-hydroxyoctanoic acid"
3HO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3S)-3-hydroxyoctanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3HO 'Create component' 2008-11-05 RCSB
3HO 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3HO O1 O 13.392 1.357 1
3HO C1 C 12.093 0.608 2
3HO O2 O 12.093 -0.892 3
3HO C2 C 10.794 1.357 4
3HO C3 C 9.495 0.608 5
3HO O3 O 9.495 -0.892 6
3HO C4 C 8.196 1.357 7
3HO C5 C 6.897 0.608 8
3HO C6 C 5.598 1.357 9
3HO C7 C 4.299 0.608 10
3HO C8 C 3.000 1.357 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3HO O1 C1 DOUBLE NONE 1
3HO C2 C1 SINGLE NONE 2
3HO C1 O2 SINGLE NONE 3
3HO C2 C3 SINGLE NONE 4
3HO C3 O3 SINGLE BEGINWEDGE 5
3HO C4 C3 SINGLE NONE 6
3HO C4 C5 SINGLE NONE 7
3HO C6 C5 SINGLE NONE 8
3HO C6 C7 SINGLE NONE 9
3HO C8 C7 SINGLE NONE 10
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id 3HO
_pdbe_chem_comp_rdkit_properties.exactmw 160.110
_pdbe_chem_comp_rdkit_properties.amw 160.213
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 89.697
_pdbe_chem_comp_rdkit_properties.tpsa 57.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.402
_pdbe_chem_comp_rdkit_properties.CrippenMR 42.402
_pdbe_chem_comp_rdkit_properties.chi0v 5.225
_pdbe_chem_comp_rdkit_properties.chi1v 2.362
_pdbe_chem_comp_rdkit_properties.chi2v 0.517
_pdbe_chem_comp_rdkit_properties.chi3v 0.517
_pdbe_chem_comp_rdkit_properties.chi4v 0.243
_pdbe_chem_comp_rdkit_properties.chi0n 21.225
_pdbe_chem_comp_rdkit_properties.chi1n 10.179
_pdbe_chem_comp_rdkit_properties.chi2n 0.517
_pdbe_chem_comp_rdkit_properties.chi3n 0.517
_pdbe_chem_comp_rdkit_properties.chi4n 0.243
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 1.434
_pdbe_chem_comp_rdkit_properties.kappa2 6.160
_pdbe_chem_comp_rdkit_properties.kappa3 7.325
_pdbe_chem_comp_rdkit_properties.Phi 0.803
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3HO UniChem PDBe 3HO
3HO UniChem 'Guide to Pharmacology' 2933
3HO UniChem ChEBI 37100
3HO UniChem ZINC ZINC000002019242
3HO UniChem fdasrs KJR5TU7HW6
3HO UniChem SureChEMBL SCHEMBL6240298
3HO UniChem HMDB HMDB0001954
3HO UniChem 'EPA CompTox Dashboard' DTXSID10463642
3HO UniChem LipidMaps LMFA01050433
3HO UniChem 'Probes And Drugs' PD050766
3HO UniChem Nikkaji J67.195I
3HO UniChem 'PubChem TPHARMA' 16459846
3HO UniChem PubChem 11367166
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3HO O1 -2.314 0.470 2.187 ETKDGv3 1
3HO C1 -2.771 0.875 1.084 ETKDGv3 2
3HO O2 -3.183 2.197 0.946 ETKDGv3 3
3HO C2 -2.842 -0.057 -0.089 ETKDGv3 4
3HO C3 -1.642 0.096 -1.039 ETKDGv3 5
3HO O3 -1.580 1.422 -1.506 ETKDGv3 6
3HO C4 -0.317 -0.292 -0.350 ETKDGv3 7
3HO C5 0.854 -0.334 -1.343 ETKDGv3 8
3HO C6 2.132 -0.938 -0.735 ETKDGv3 9
3HO C7 2.753 -0.074 0.382 ETKDGv3 10
3HO C8 2.439 -0.612 1.778 ETKDGv3 11
3HO HO2 -3.129 2.842 1.725 ETKDGv3 12
3HO H2 -2.905 -1.108 0.271 ETKDGv3 13
3HO H2A -3.777 0.153 -0.652 ETKDGv3 14
3HO H3 -1.820 -0.602 -1.892 ETKDGv3 15
3HO HO3 -1.200 1.392 -2.422 ETKDGv3 16
3HO H4 -0.092 0.447 0.447 ETKDGv3 17
3HO H4A -0.432 -1.295 0.117 ETKDGv3 18
3HO H5 0.567 -0.957 -2.218 ETKDGv3 19
3HO H5A 1.071 0.691 -1.717 ETKDGv3 20
3HO H6 2.877 -1.027 -1.557 ETKDGv3 21
3HO H6A 1.931 -1.973 -0.381 ETKDGv3 22
3HO H7 3.859 -0.071 0.262 ETKDGv3 23
3HO H7A 2.416 0.983 0.306 ETKDGv3 24
3HO H8 2.857 -1.634 1.898 ETKDGv3 25
3HO H8A 2.901 0.049 2.542 ETKDGv3 26
3HO H8B 1.346 -0.645 1.957 ETKDGv3 27
#