data_31B
#
_chem_comp.id 31B
_chem_comp.name "benzoyl-oxydephosphocoenzyme A"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H39 N7 O15 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms benzoyl-OdCoA
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-05-15
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 775.595
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 31B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4QD9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
31B O13 O13 O 0 1 N N N N N N 61.071 67.028 36.222 -12.837 -2.354 -0.395 O13 31B 1
31B C21 C21 C 0 1 N N N N N N 59.924 66.858 36.676 -11.665 -2.594 -0.604 C21 31B 2
31B C22 C22 C 0 1 Y N N N N N 59.206 65.522 36.363 -11.263 -3.296 -1.840 C22 31B 3
31B C27 C27 C 0 1 Y N N N N N 59.768 64.652 35.427 -9.917 -3.578 -2.079 C27 31B 4
31B C26 C26 C 0 1 Y N N N N N 59.119 63.445 35.130 -9.548 -4.234 -3.235 C26 31B 5
31B C25 C25 C 0 1 Y N N N N N 57.914 63.123 35.796 -10.509 -4.612 -4.157 C25 31B 6
31B C24 C24 C 0 1 Y N N N N N 57.366 63.979 36.726 -11.845 -4.335 -3.925 C24 31B 7
31B C23 C23 C 0 1 Y N N N N N 58.020 65.202 37.018 -12.228 -3.685 -2.771 C23 31B 8
31B O12 O12 O 0 1 N N N N N N 59.345 67.756 37.612 -10.731 -2.215 0.290 O12 31B 9
31B C20 C20 C 0 1 N N N N N N 59.707 69.151 37.454 -11.198 -1.524 1.479 C20 31B 10
31B C19 C19 C 0 1 N N N N N N 60.911 69.461 38.272 -10.003 -1.176 2.369 C19 31B 11
31B N6 N6 N 0 1 N N N N N N 60.543 69.775 39.635 -9.142 -0.215 1.675 N6 31B 12
31B C18 C18 C 0 1 N N N N N N 59.828 71.026 39.925 -8.021 0.239 2.272 C18 31B 13
31B O11 O11 O 0 1 N N N N N N 59.563 71.802 39.032 -7.726 -0.149 3.382 O11 31B 14
31B C17 C17 C 0 1 N N N N N N 59.424 71.350 41.378 -7.135 1.227 1.558 C17 31B 15
31B C16 C16 C 0 1 N N N N N N 59.504 72.847 41.672 -5.940 1.576 2.448 C16 31B 16
31B N5 N5 N 0 1 N N N N N N 59.521 73.023 43.096 -5.079 2.537 1.755 N5 31B 17
31B C15 C15 C 0 1 N N N N N N 58.333 73.139 43.771 -3.959 2.990 2.351 C15 31B 18
31B O10 O10 O 0 1 N N N N N N 57.264 73.102 43.125 -3.711 2.676 3.496 O10 31B 19
31B C14 C14 C 0 1 N N R N N N 58.341 73.323 45.288 -3.013 3.888 1.595 C14 31B 20
31B O9 O9 O 0 1 N N N N N N 59.568 73.938 45.710 -3.640 4.333 0.391 O9 31B 21
31B C1 C1 C 0 1 N N N N N N 58.197 71.976 46.014 -1.740 3.113 1.251 C1 31B 22
31B C C C 0 1 N N N N N N 56.924 71.311 45.635 -0.991 2.765 2.539 C 31B 23
31B C2 C2 C 0 1 N N N N N N 59.345 71.053 45.660 -2.110 1.825 0.512 C2 31B 24
31B C3 C3 C 0 1 N N N N N N 58.204 72.282 47.584 -0.844 3.974 0.358 C3 31B 25
31B O O O 0 1 N N N N N N 57.131 73.235 47.800 0.345 3.250 0.037 O 31B 26
31B P P P 0 1 N N N N N N 57.255 74.485 48.846 1.516 3.854 -0.889 P 31B 27
31B O1 O1 O 0 1 N N N N N N 56.287 74.312 50.001 0.956 4.082 -2.381 O1 31B 28
31B O2 O2 O 0 1 N N N N N N 58.640 74.632 49.404 1.970 5.147 -0.330 O2 31B 29
31B O3 O3 O 0 1 N N N N N N 56.987 75.785 48.040 2.752 2.824 -0.931 O3 31B 30
31B P1 P1 P 0 1 N N N N N N 55.656 76.559 47.902 4.314 2.964 -1.297 P1 31B 31
31B O4 O4 O 0 1 N N N N N N 54.554 75.665 47.419 4.468 3.863 -2.463 O4 31B 32
31B O5 O5 O 0 1 N N N N N N 55.278 77.199 49.134 5.107 3.579 -0.038 O5 31B 33
31B C4 C4 C 0 1 N N N N N N 56.723 77.200 45.638 6.250 1.318 -2.121 C4 31B 34
31B C5 C5 C 0 1 N N S N N N 57.025 78.400 44.899 6.493 -0.173 -2.363 C5 31B 35
31B C13 C13 C 0 1 N N S N N N 56.096 78.468 43.767 7.918 -0.404 -2.913 C13 31B 36
31B O8 O8 O 0 1 N N N N N N 56.720 79.569 45.756 6.458 -0.897 -1.114 O8 31B 37
31B C12 C12 C 0 1 N N R N N N 55.902 79.942 43.644 8.370 -1.721 -2.244 C12 31B 38
31B O7 O7 O 0 1 N N N N N N 54.921 80.379 42.684 9.525 -1.500 -1.433 O7 31B 39
31B C6 C6 C 0 1 N N R N N N 55.775 80.394 45.020 7.164 -2.131 -1.369 C6 31B 40
31B O6 O6 O 0 1 N N N N N N 55.960 77.650 46.793 4.914 1.514 -1.654 O6 31B 41
31B C7 C7 C 0 1 Y N N N N N 54.386 80.148 45.569 7.638 -2.741 -0.075 C7 31B 42
31B N4 N4 N 0 1 Y N N N N N 54.034 80.222 46.870 7.279 -2.314 1.169 N4 31B 43
31B C11 C11 C 0 1 Y N N N N N 52.697 79.925 46.945 7.914 -3.120 2.080 C11 31B 44
31B C8 C8 C 0 1 Y N N N N N 52.244 79.660 45.637 8.664 -4.039 1.327 C8 31B 45
31B N N N 0 1 Y N N N N N 53.329 79.811 44.829 8.447 -3.756 0.020 N 31B 46
31B N3 N3 N 0 1 Y N N N N N 51.774 79.841 47.963 7.952 -3.189 3.406 N3 31B 47
31B C10 C10 C 0 1 Y N N N N N 50.511 79.525 47.726 8.681 -4.104 4.010 C10 31B 48
31B N2 N2 N 0 1 Y N N N N N 50.050 79.270 46.507 9.401 -4.988 3.345 N2 31B 49
31B C9 C9 C 0 1 Y N N N N N 50.885 79.326 45.435 9.425 -4.998 2.017 C9 31B 50
31B N1 N1 N 0 1 N N N N N N 50.423 79.067 44.171 10.184 -5.929 1.329 N1 31B 51
31B O14 O14 O 0 1 N N N N N N 54.907 77.746 44.086 8.781 0.671 -2.536 O14 31B 52
31B H1 H1 H 0 1 N N N N N N 60.695 64.907 34.935 -9.166 -3.283 -1.362 H1 31B 53
31B H2 H2 H 0 1 N N N N N N 59.536 62.768 34.399 -8.507 -4.453 -3.422 H2 31B 54
31B H3 H3 H 0 1 N N N N N N 57.415 62.191 35.572 -10.215 -5.125 -5.060 H3 31B 55
31B H4 H4 H 0 1 N N N N N N 56.446 63.720 37.228 -12.590 -4.633 -4.649 H4 31B 56
31B H5 H5 H 0 1 N N N N N N 57.601 65.882 37.745 -13.271 -3.474 -2.589 H5 31B 57
31B H6 H6 H 0 1 N N N N N N 59.924 69.353 36.395 -11.714 -0.609 1.189 H6 31B 58
31B H7 H7 H 0 1 N N N N N N 58.870 69.784 37.784 -11.884 -2.169 2.028 H7 31B 59
31B H8 H8 H 0 1 N N N N N N 61.581 68.588 38.272 -10.360 -0.738 3.301 H8 31B 60
31B H9 H9 H 0 1 N N N N N N 61.433 70.324 37.832 -9.436 -2.081 2.586 H9 31B 61
31B H10 H10 H 0 1 N N N N N N 60.774 69.144 40.376 -9.378 0.095 0.787 H10 31B 62
31B H11 H11 H 0 1 N N N N N N 58.391 71.010 41.544 -6.779 0.789 0.626 H11 31B 63
31B H12 H12 H 0 1 N N N N N N 60.100 70.817 42.062 -7.702 2.132 1.341 H12 31B 64
31B H13 H13 H 0 1 N N N N N N 60.423 73.264 41.234 -6.297 2.014 3.380 H13 31B 65
31B H14 H14 H 0 1 N N N N N N 58.629 73.358 41.244 -5.373 0.671 2.666 H14 31B 66
31B H15 H15 H 0 1 N N N N N N 60.389 73.061 43.591 -5.315 2.847 0.867 H15 31B 67
31B H16 H16 H 0 1 N N N N N N 57.490 73.961 45.567 -2.759 4.750 2.212 H16 31B 68
31B H17 H17 H 0 1 N N N N N N 59.560 74.047 46.654 -3.894 3.618 -0.208 H17 31B 69
31B H18 H18 H 0 1 N N N N N N 56.840 70.350 46.164 -1.598 2.088 3.141 H18 31B 70
31B H19 H19 H 0 1 N N N N N N 56.077 71.957 45.910 -0.046 2.282 2.291 H19 31B 71
31B H20 H20 H 0 1 N N N N N N 56.912 71.134 44.549 -0.796 3.676 3.104 H20 31B 72
31B H21 H21 H 0 1 N N N N N N 59.223 70.096 46.189 -2.643 2.074 -0.405 H21 31B 73
31B H22 H22 H 0 1 N N N N N N 59.350 70.874 44.575 -1.203 1.273 0.267 H22 31B 74
31B H23 H23 H 0 1 N N N N N N 60.296 71.519 45.959 -2.748 1.212 1.149 H23 31B 75
31B H24 H24 H 0 1 N N N N N N 58.020 71.360 48.156 -1.378 4.222 -0.559 H24 31B 76
31B H25 H25 H 0 1 N N N N N N 59.169 72.715 47.887 -0.581 4.891 0.885 H25 31B 77
31B H26 H26 H 0 1 N N N N N N 56.765 74.334 50.822 0.641 3.275 -2.810 H26 31B 78
31B H27 H27 H 0 1 N N N N N N 54.405 76.918 49.382 5.049 3.041 0.763 H27 31B 79
31B H28 H28 H 0 1 N N N N N N 56.125 76.509 45.025 6.954 1.684 -1.374 H28 31B 80
31B H29 H29 H 0 1 N N N N N N 57.649 76.700 45.958 6.393 1.865 -3.053 H29 31B 81
31B H30 H30 H 0 1 N N N N N N 58.072 78.418 44.561 5.749 -0.571 -3.053 H30 31B 82
31B H31 H31 H 0 1 N N N N N N 56.568 78.071 42.856 7.896 -0.512 -3.997 H31 31B 83
31B H32 H32 H 0 1 N N N N N N 56.867 80.334 43.289 8.571 -2.483 -2.997 H32 31B 84
31B H33 H33 H 0 1 N N N N N N 54.877 81.328 42.685 10.296 -1.183 -1.924 H33 31B 85
31B H34 H34 H 0 1 N N N N N N 56.032 81.460 45.109 6.525 -2.831 -1.906 H34 31B 86
31B H35 H35 H 0 1 N N N N N N 54.635 80.451 47.636 6.683 -1.577 1.373 H35 31B 87
31B H37 H37 H 0 1 N N N N N N 49.826 79.472 48.559 8.689 -4.133 5.090 H37 31B 88
31B H38 H38 H 0 1 N N N N N N 49.447 78.852 44.210 10.193 -5.925 0.359 H38 31B 89
31B H39 H39 H 0 1 N N N N N N 50.565 79.871 43.593 10.705 -6.585 1.816 H39 31B 90
31B H40 H40 H 0 1 N N N N N N 55.106 76.819 44.148 9.688 0.577 -2.855 H40 31B 91
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
31B C26 C27 DOUB Y N 1
31B C26 C25 SING Y N 2
31B C27 C22 SING Y N 3
31B C25 C24 DOUB Y N 4
31B O13 C21 DOUB N N 5
31B C22 C21 SING N N 6
31B C22 C23 DOUB Y N 7
31B C21 O12 SING N N 8
31B C24 C23 SING Y N 9
31B C20 O12 SING N N 10
31B C20 C19 SING N N 11
31B C19 N6 SING N N 12
31B O11 C18 DOUB N N 13
31B N6 C18 SING N N 14
31B C18 C17 SING N N 15
31B C17 C16 SING N N 16
31B C16 N5 SING N N 17
31B O7 C12 SING N N 18
31B N5 C15 SING N N 19
31B O10 C15 DOUB N N 20
31B C12 C13 SING N N 21
31B C12 C6 SING N N 22
31B C13 O14 SING N N 23
31B C13 C5 SING N N 24
31B C15 C14 SING N N 25
31B N1 C9 SING N N 26
31B N C7 DOUB Y N 27
31B N C8 SING Y N 28
31B C5 C4 SING N N 29
31B C5 O8 SING N N 30
31B C6 C7 SING N N 31
31B C6 O8 SING N N 32
31B C14 O9 SING N N 33
31B C14 C1 SING N N 34
31B C9 C8 DOUB Y N 35
31B C9 N2 SING Y N 36
31B C7 N4 SING Y N 37
31B C C1 SING N N 38
31B C8 C11 SING Y N 39
31B C4 O6 SING N N 40
31B C2 C1 SING N N 41
31B C1 C3 SING N N 42
31B N2 C10 DOUB Y N 43
31B O6 P1 SING N N 44
31B N4 C11 SING Y N 45
31B C11 N3 DOUB Y N 46
31B O4 P1 DOUB N N 47
31B C3 O SING N N 48
31B C10 N3 SING Y N 49
31B O P SING N N 50
31B P1 O3 SING N N 51
31B P1 O5 SING N N 52
31B O3 P SING N N 53
31B P O2 DOUB N N 54
31B P O1 SING N N 55
31B C27 H1 SING N N 56
31B C26 H2 SING N N 57
31B C25 H3 SING N N 58
31B C24 H4 SING N N 59
31B C23 H5 SING N N 60
31B C20 H6 SING N N 61
31B C20 H7 SING N N 62
31B C19 H8 SING N N 63
31B C19 H9 SING N N 64
31B N6 H10 SING N N 65
31B C17 H11 SING N N 66
31B C17 H12 SING N N 67
31B C16 H13 SING N N 68
31B C16 H14 SING N N 69
31B N5 H15 SING N N 70
31B C14 H16 SING N N 71
31B O9 H17 SING N N 72
31B C H18 SING N N 73
31B C H19 SING N N 74
31B C H20 SING N N 75
31B C2 H21 SING N N 76
31B C2 H22 SING N N 77
31B C2 H23 SING N N 78
31B C3 H24 SING N N 79
31B C3 H25 SING N N 80
31B O1 H26 SING N N 81
31B O5 H27 SING N N 82
31B C4 H28 SING N N 83
31B C4 H29 SING N N 84
31B C5 H30 SING N N 85
31B C13 H31 SING N N 86
31B C12 H32 SING N N 87
31B O7 H33 SING N N 88
31B C6 H34 SING N N 89
31B N4 H35 SING N N 90
31B C10 H37 SING N N 91
31B N1 H38 SING N N 92
31B N1 H39 SING N N 93
31B O14 H40 SING N N 94
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
31B SMILES ACDLabs 12.01 O=C(OCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC3OC(c2nc1c(ncnc1n2)N)C(O)C3O)O)O)c4ccccc4
31B InChI InChI 1.03 InChI=1S/C28H39N7O15P2/c1-28(2,22(39)26(40)31-9-8-17(36)30-10-11-46-27(41)15-6-4-3-5-7-15)13-48-52(44,45)50-51(42,43)47-12-16-19(37)20(38)21(49-16)25-34-18-23(29)32-14-33-24(18)35-25/h3-7,14,16,19-22,37-39H,8-13H2,1-2H3,(H,30,36)(H,31,40)(H,42,43)(H,44,45)(H3,29,32,33,34,35)/t16-,19+,20+,21-,22-/m0/s1
31B InChIKey InChI 1.03 KLLSEACSJWFZEP-NKRQLCBBSA-N
31B SMILES_CANONICAL CACTVS 3.385 CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@@H]1O[C@@H]([C@H](O)[C@@H]1O)c2[nH]c3ncnc(N)c3n2)[C@@H](O)C(=O)NCCC(=O)NCCOC(=O)c4ccccc4
31B SMILES CACTVS 3.385 CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)c2[nH]c3ncnc(N)c3n2)[CH](O)C(=O)NCCC(=O)NCCOC(=O)c4ccccc4
31B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)(COP(=O)(O)OP(=O)(O)OC[C@H]1[C@H]([C@H]([C@H](O1)c2[nH]c3c(n2)c(ncn3)N)O)O)[C@H](C(=O)NCCC(=O)NCCOC(=O)c4ccccc4)O
31B SMILES "OpenEye OEToolkits" 1.7.6 CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)c2[nH]c3c(n2)c(ncn3)N)O)O)C(C(=O)NCCC(=O)NCCOC(=O)c4ccccc4)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
31B "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,5S,9R)-1-[(2S,3S,4R,5R)-5-(6-amino-9H-purin-8-yl)-3,4-dihydroxytetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl benzoate (non-preferred name)"
31B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[3-[[(2R)-4-[[[(2S,3S,4R,5R)-5-(6-azanyl-9H-purin-8-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl benzoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
31B 'Create component' 2014-05-15 RCSB
31B 'Modify synonyms' 2014-06-26 RCSB
31B 'Initial release' 2015-05-13 RCSB
31B 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 31B
_pdbx_chem_comp_synonyms.name benzoyl-OdCoA
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 31B
_pdbe_chem_comp_synonyms.name benzoyl-OdCoA
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
31B O13 O 19.684 12.450 1
31B C21 C 21.055 11.839 2
31B C22 C 22.268 12.721 3
31B C27 C 23.639 12.111 4
31B C26 C 24.852 12.993 5
31B C25 C 24.695 14.485 6
31B C24 C 23.325 15.095 7
31B C23 C 22.112 14.213 8
31B O12 O 21.212 10.348 9
31B C20 C 19.998 9.466 10
31B C19 C 20.155 7.974 11
31B N6 N 18.941 7.093 12
31B C18 C 19.098 5.601 13
31B O11 O 20.469 4.991 14
31B C17 C 17.885 4.719 15
31B C16 C 18.042 3.227 16
31B N5 N 16.828 2.346 17
31B C15 C 16.985 0.854 18
31B O10 O 18.355 0.244 19
31B C14 C 15.771 -0.028 20
31B O9 O 14.401 0.582 21
31B C1 C 15.928 -1.520 22
31B C C 17.420 -1.363 23
31B C2 C 14.436 -1.676 24
31B C3 C 16.085 -3.011 25
31B O O 14.871 -3.893 26
31B P P 15.028 -5.385 27
31B O1 O 13.536 -5.542 28
31B O2 O 16.520 -5.228 29
31B O3 O 15.185 -6.877 30
31B P1 P 13.971 -7.758 31
31B O4 O 13.090 -6.545 32
31B O5 O 14.853 -8.972 33
31B C4 C 12.915 -10.132 34
31B C5 C 11.701 -11.013 35
31B C13 C 11.701 -12.513 36
31B O8 O 10.275 -10.550 37
31B C12 C 10.275 -12.977 38
31B O7 O 9.811 -14.404 39
31B C6 C 9.393 -11.763 40
31B O6 O 12.758 -8.640 41
31B C7 C 7.893 -11.763 42
31B N4 N 7.018 -12.970 43
31B C11 C 5.598 -12.513 44
31B C8 C 5.598 -11.013 45
31B N N 7.018 -10.556 46
31B N3 N 4.299 -13.263 47
31B C10 C 3.000 -12.513 48
31B N2 N 3.000 -11.013 49
31B C9 C 4.299 -10.263 50
31B N1 N 4.299 -8.763 51
31B O14 O 12.915 -13.395 52
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
31B C26 C27 DOUBLE NONE 1
31B C26 C25 SINGLE NONE 2
31B C27 C22 SINGLE NONE 3
31B C25 C24 DOUBLE NONE 4
31B O13 C21 DOUBLE NONE 5
31B C22 C21 SINGLE NONE 6
31B C22 C23 DOUBLE NONE 7
31B C21 O12 SINGLE NONE 8
31B C24 C23 SINGLE NONE 9
31B C20 O12 SINGLE NONE 10
31B C20 C19 SINGLE NONE 11
31B C19 N6 SINGLE NONE 12
31B O11 C18 DOUBLE NONE 13
31B N6 C18 SINGLE NONE 14
31B C18 C17 SINGLE NONE 15
31B C17 C16 SINGLE NONE 16
31B C16 N5 SINGLE NONE 17
31B C12 O7 SINGLE BEGINWEDGE 18
31B N5 C15 SINGLE NONE 19
31B O10 C15 DOUBLE NONE 20
31B C12 C13 SINGLE NONE 21
31B C12 C6 SINGLE NONE 22
31B C13 O14 SINGLE BEGINWEDGE 23
31B C13 C5 SINGLE NONE 24
31B C15 C14 SINGLE NONE 25
31B N1 C9 SINGLE NONE 26
31B N C7 DOUBLE NONE 27
31B N C8 SINGLE NONE 28
31B C5 C4 SINGLE BEGINWEDGE 29
31B C5 O8 SINGLE NONE 30
31B C6 C7 SINGLE BEGINWEDGE 31
31B C6 O8 SINGLE NONE 32
31B C14 O9 SINGLE BEGINWEDGE 33
31B C14 C1 SINGLE NONE 34
31B C9 C8 SINGLE NONE 35
31B C9 N2 DOUBLE NONE 36
31B C7 N4 SINGLE NONE 37
31B C C1 SINGLE NONE 38
31B C8 C11 DOUBLE NONE 39
31B C4 O6 SINGLE NONE 40
31B C2 C1 SINGLE NONE 41
31B C1 C3 SINGLE NONE 42
31B N2 C10 SINGLE NONE 43
31B O6 P1 SINGLE NONE 44
31B N4 C11 SINGLE NONE 45
31B C11 N3 SINGLE NONE 46
31B O4 P1 DOUBLE NONE 47
31B C3 O SINGLE NONE 48
31B C10 N3 DOUBLE NONE 49
31B O P SINGLE NONE 50
31B P1 O3 SINGLE NONE 51
31B P1 O5 SINGLE BEGINDASH 52
31B O3 P SINGLE NONE 53
31B P O2 DOUBLE NONE 54
31B P O1 SINGLE BEGINDASH 55
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
31B MurckoScaffold S1 scaffold 'O=C(CCCO[PH](=O)O[PH](=O)OC[C@H]1CC[C@@H](c2nc3cncnc3[nH]2)O1)NCCC(=O)NCCOC(=O)c1ccccc1' InChI=1S/C26H34N6O10P2/c33-22(28-11-10-23(34)29-12-14-38-26(35)18-5-2-1-3-6-18)7-4-13-39-43(36)42-44(37)40-16-19-8-9-21(41-19)25-31-20-15-27-17-30-24(20)32-25/h1-3,5-6,15,17,19,21,43-44H,4,7-14,16H2,(H,28,33)(H,29,34)(H,27,30,31,32)/t19-,21+/m1/s1 WEVBYILOXZEAMG-CTNGQTDRSA-N
31B adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
31B amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
31B imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
31B phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
31B phosphate F5 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
31B purine F6 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
31B pyrimidine F7 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
31B ribose F8 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
31B O13 S1 1
31B C21 S1 1
31B C22 S1 1
31B C27 S1 1
31B C26 S1 1
31B C25 S1 1
31B C24 S1 1
31B C23 S1 1
31B O12 S1 1
31B C20 S1 1
31B C19 S1 1
31B N6 S1 1
31B C18 S1 1
31B O11 S1 1
31B C17 S1 1
31B C16 S1 1
31B N5 S1 1
31B C15 S1 1
31B O10 S1 1
31B C14 S1 1
31B C1 S1 1
31B C3 S1 1
31B O S1 1
31B P S1 1
31B O2 S1 1
31B O3 S1 1
31B P1 S1 1
31B O4 S1 1
31B C4 S1 1
31B C5 S1 1
31B C13 S1 1
31B O8 S1 1
31B C12 S1 1
31B C6 S1 1
31B O6 S1 1
31B C7 S1 1
31B N4 S1 1
31B C11 S1 1
31B C8 S1 1
31B N S1 1
31B N3 S1 1
31B C10 S1 1
31B N2 S1 1
31B C9 S1 1
31B N2 F1 1
31B C9 F1 1
31B C8 F1 1
31B C11 F1 1
31B N3 F1 1
31B C10 F1 1
31B N4 F1 1
31B C7 F1 1
31B N F1 1
31B N1 F1 1
31B N6 F2 1
31B C18 F2 1
31B O11 F2 1
31B C17 F2 1
31B N5 F2 2
31B C15 F2 2
31B O10 F2 2
31B C14 F2 2
31B C11 F3 1
31B C8 F3 1
31B N F3 1
31B C7 F3 1
31B N4 F3 1
31B C22 F4 1
31B C27 F4 1
31B C26 F4 1
31B C25 F4 1
31B C24 F4 1
31B C23 F4 1
31B O F5 1
31B P F5 1
31B O2 F5 1
31B O3 F5 1
31B O1 F5 1
31B O3 F5 2
31B P1 F5 2
31B O4 F5 2
31B O6 F5 2
31B O5 F5 2
31B N F6 1
31B C7 F6 1
31B N4 F6 1
31B C11 F6 1
31B C8 F6 1
31B C9 F6 1
31B N2 F6 1
31B C10 F6 1
31B N3 F6 1
31B C8 F7 1
31B C9 F7 1
31B N2 F7 1
31B C10 F7 1
31B N3 F7 1
31B C11 F7 1
31B C12 F8 1
31B C13 F8 1
31B C5 F8 1
31B O8 F8 1
31B C6 F8 1
31B C4 F8 1
31B O6 F8 1
31B O14 F8 1
31B O7 F8 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 31B
_pdbe_chem_comp_rdkit_properties.exactmw 775.198
_pdbe_chem_comp_rdkit_properties.amw 775.602
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 22
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 26
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 19
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 52
_pdbe_chem_comp_rdkit_properties.NumAtoms 91
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 24
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 350.316
_pdbe_chem_comp_rdkit_properties.tpsa 337.190
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.704
_pdbe_chem_comp_rdkit_properties.CrippenMR 171.950
_pdbe_chem_comp_rdkit_properties.chi0v 25.938
_pdbe_chem_comp_rdkit_properties.chi1v 15.238
_pdbe_chem_comp_rdkit_properties.chi2v 7.087
_pdbe_chem_comp_rdkit_properties.chi3v 7.087
_pdbe_chem_comp_rdkit_properties.chi4v 4.477
_pdbe_chem_comp_rdkit_properties.chi0n 63.149
_pdbe_chem_comp_rdkit_properties.chi1n 31.094
_pdbe_chem_comp_rdkit_properties.chi2n 4.858
_pdbe_chem_comp_rdkit_properties.chi3n 4.858
_pdbe_chem_comp_rdkit_properties.chi4n 2.787
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.920
_pdbe_chem_comp_rdkit_properties.kappa1 13.134
_pdbe_chem_comp_rdkit_properties.kappa2 17.271
_pdbe_chem_comp_rdkit_properties.kappa3 11.045
_pdbe_chem_comp_rdkit_properties.Phi 4.362
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
31B UniChem ZINC ZINC000230470536
31B UniChem PubChem 91754946
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
31B O13 -8.389 0.395 0.837 ETKDGv3 1
31B C21 -8.918 -0.716 0.556 ETKDGv3 2
31B C22 -10.038 -1.225 1.376 ETKDGv3 3
31B C27 -10.543 -0.431 2.529 ETKDGv3 4
31B C26 -11.558 -0.889 3.273 ETKDGv3 5
31B C25 -12.185 -2.187 2.953 ETKDGv3 6
31B C24 -11.738 -2.907 1.918 ETKDGv3 7
31B C23 -10.618 -2.407 1.093 ETKDGv3 8
31B O12 -8.440 -1.469 -0.524 ETKDGv3 9
31B C20 -7.401 -1.026 -1.394 ETKDGv3 10
31B C19 -7.935 0.013 -2.383 ETKDGv3 11
31B N6 -6.862 0.477 -3.260 ETKDGv3 12
31B C18 -6.318 -0.336 -4.309 ETKDGv3 13
31B O11 -6.880 -1.418 -4.633 ETKDGv3 14
31B C17 -5.047 0.069 -4.997 ETKDGv3 15
31B C16 -3.845 -0.691 -4.425 ETKDGv3 16
31B N5 -3.606 -0.347 -3.022 ETKDGv3 17
31B C15 -2.573 -0.992 -2.263 ETKDGv3 18
31B O10 -1.819 -1.834 -2.824 ETKDGv3 19
31B C14 -2.349 -0.673 -0.799 ETKDGv3 20
31B O9 -3.570 -0.649 -0.096 ETKDGv3 21
31B C1 -1.468 0.607 -0.548 ETKDGv3 22
31B C -2.085 1.879 -1.179 ETKDGv3 23
31B C2 -1.330 0.840 0.974 ETKDGv3 24
31B C3 -0.050 0.412 -1.153 ETKDGv3 25
31B O 0.573 -0.724 -0.595 ETKDGv3 26
31B P 2.064 -0.971 -1.383 ETKDGv3 27
31B O1 2.878 -2.216 -0.570 ETKDGv3 28
31B O2 1.802 -1.385 -2.816 ETKDGv3 29
31B O3 2.969 0.473 -1.343 ETKDGv3 30
31B P1 4.534 0.134 -1.927 ETKDGv3 31
31B O4 4.464 -0.519 -3.290 ETKDGv3 32
31B O5 5.384 1.591 -2.078 ETKDGv3 33
31B C4 5.431 -0.265 0.403 ETKDGv3 34
31B C5 6.176 -1.170 1.391 ETKDGv3 35
31B C13 7.593 -1.542 0.947 ETKDGv3 36
31B O8 6.238 -0.548 2.658 ETKDGv3 37
31B C12 8.278 -1.744 2.276 ETKDGv3 38
31B O7 9.658 -1.478 2.222 ETKDGv3 39
31B C6 7.523 -0.781 3.197 ETKDGv3 40
31B O6 5.372 -0.894 -0.856 ETKDGv3 41
31B C7 8.231 0.535 3.373 ETKDGv3 42
31B N4 9.175 0.779 4.425 ETKDGv3 43
31B C11 9.603 2.087 4.110 ETKDGv3 44
31B C8 8.995 2.514 3.039 ETKDGv3 45
31B N 8.107 1.525 2.533 ETKDGv3 46
31B N3 10.615 2.854 4.772 ETKDGv3 47
31B C10 10.924 4.027 4.283 ETKDGv3 48
31B N2 10.262 4.526 3.092 ETKDGv3 49
31B C9 9.344 3.825 2.480 ETKDGv3 50
31B N1 8.709 4.326 1.305 ETKDGv3 51
31B O14 8.195 -0.490 0.230 ETKDGv3 52
31B H1 -10.094 0.522 2.777 ETKDGv3 53
31B H2 -11.922 -0.309 4.111 ETKDGv3 54
31B H3 -13.005 -2.552 3.557 ETKDGv3 55
31B H4 -12.197 -3.859 1.682 ETKDGv3 56
31B H5 -10.280 -3.013 0.262 ETKDGv3 57
31B H6 -6.559 -0.604 -0.804 ETKDGv3 58
31B H7 -7.018 -1.905 -1.954 ETKDGv3 59
31B H8 -8.343 0.880 -1.821 ETKDGv3 60
31B H9 -8.760 -0.420 -2.989 ETKDGv3 61
31B H10 -6.474 1.434 -3.103 ETKDGv3 62
31B H11 -4.883 1.163 -4.895 ETKDGv3 63
31B H12 -5.135 -0.156 -6.082 ETKDGv3 64
31B H13 -2.942 -0.435 -5.020 ETKDGv3 65
31B H14 -4.021 -1.786 -4.515 ETKDGv3 66
31B H15 -4.188 0.392 -2.570 ETKDGv3 67
31B H16 -1.792 -1.537 -0.376 ETKDGv3 68
31B H17 -4.074 0.160 -0.356 ETKDGv3 69
31B H18 -3.090 2.101 -0.767 ETKDGv3 70
31B H19 -1.444 2.763 -0.970 ETKDGv3 71
31B H20 -2.161 1.783 -2.282 ETKDGv3 72
31B H21 -0.651 1.695 1.183 ETKDGv3 73
31B H22 -0.919 -0.061 1.477 ETKDGv3 74
31B H23 -2.317 1.070 1.430 ETKDGv3 75
31B H24 0.559 1.320 -0.941 ETKDGv3 76
31B H25 -0.144 0.310 -2.259 ETKDGv3 77
31B H26 3.334 -2.738 -1.278 ETKDGv3 78
31B H27 4.796 2.170 -2.625 ETKDGv3 79
31B H28 4.406 -0.097 0.805 ETKDGv3 80
31B H29 5.957 0.715 0.341 ETKDGv3 81
31B H30 5.587 -2.109 1.504 ETKDGv3 82
31B H31 7.584 -2.481 0.345 ETKDGv3 83
31B H32 8.103 -2.788 2.628 ETKDGv3 84
31B H33 10.071 -2.241 1.738 ETKDGv3 85
31B H34 7.408 -1.249 4.199 ETKDGv3 86
31B H35 9.514 0.135 5.173 ETKDGv3 87
31B H37 11.683 4.626 4.765 ETKDGv3 88
31B H38 7.977 3.765 0.815 ETKDGv3 89
31B H39 8.971 5.261 0.920 ETKDGv3 90
31B H40 8.935 -0.890 -0.297 ETKDGv3 91
#