data_2S0
#
_chem_comp.id 2S0
_chem_comp.name
;[(8S,11R,13S,14S,17R)-17-acetyl-11-[4-(dimethylamino)phenyl]-13-methyl-3-oxo-1,2,6,7,8,11,12,14,15,16-decahydrocyclopen
ta[a]phenanthren-17-yl] acetate
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H37 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ulipristal acetate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-06-19
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 475.619
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2S0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4OAR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2S0 C1 C1 C 0 1 N N N N N N 14.612 26.442 16.763 -3.427 -0.661 -1.524 C1 2S0 1
2S0 C2 C2 C 0 1 N N N N N N 14.822 27.818 17.348 -4.330 -1.824 -1.947 C2 2S0 2
2S0 C3 C3 C 0 1 N N N N N N 14.444 29.067 16.402 -5.259 -2.189 -0.821 C3 2S0 3
2S0 C4 C4 C 0 1 N N N N N N 14.001 28.807 15.120 -4.840 -2.130 0.520 C4 2S0 4
2S0 C5 C5 C 0 1 N N N N N N 13.905 27.512 14.577 -3.642 -1.595 0.842 C5 2S0 5
2S0 C6 C6 C 0 1 N N N N N N 13.395 27.443 13.136 -3.134 -1.587 2.263 C6 2S0 6
2S0 C7 C7 C 0 1 N N N N N N 14.067 26.336 12.325 -1.658 -1.984 2.230 C7 2S0 7
2S0 C8 C8 C 0 1 N N S N N N 14.230 25.009 13.045 -0.846 -1.048 1.352 C8 2S0 8
2S0 C9 C9 C 0 1 N N N N N N 14.527 25.045 14.590 -1.513 -0.729 0.038 C9 2S0 9
2S0 C10 C10 C 0 1 N N N N N N 14.352 26.323 15.300 -2.797 -0.997 -0.191 C10 2S0 10
2S0 C11 C11 C 0 1 N N R N N N 14.982 23.701 15.311 -0.731 -0.049 -1.067 C11 2S0 11
2S0 C12 C12 C 0 1 N N N N N N 15.427 22.652 14.433 0.669 -0.666 -1.206 C12 2S0 12
2S0 C13 C13 C 0 1 N N S N N N 14.864 22.476 13.003 1.299 -0.668 0.176 C13 2S0 13
2S0 C14 C14 C 0 1 N N S N N N 14.858 23.801 12.301 0.504 -1.681 1.042 C14 2S0 14
2S0 C15 C15 C 0 1 N N N N N N 14.640 23.492 10.822 1.423 -1.840 2.261 C15 2S0 15
2S0 C16 C16 C 0 1 N N N N N N 15.260 22.088 10.672 2.839 -1.895 1.629 C16 2S0 16
2S0 C17 C17 C 0 1 N N R N N N 15.736 21.648 12.084 2.738 -1.173 0.247 C17 2S0 17
2S0 C18 C18 C 0 1 N N N N N N 13.477 21.828 13.125 1.207 0.730 0.791 C18 2S0 18
2S0 C20 C20 C 0 1 N N N N N N 15.943 20.123 12.282 3.710 -0.023 0.186 C20 2S0 19
2S0 C21 C21 C 0 1 N N N N N N 16.692 19.526 13.465 4.207 0.474 -1.146 C21 2S0 20
2S0 O3 O3 O 0 1 N N N N N N 14.515 30.249 16.890 -6.394 -2.541 -1.075 O3 2S0 21
2S0 O20 O20 O 0 1 N N N N N N 15.518 19.312 11.497 4.090 0.500 1.206 O20 2S0 22
2S0 C32 C32 C 0 1 Y N N N N N 13.748 23.095 16.133 -0.596 1.418 -0.750 C32 2S0 23
2S0 C33 C33 C 0 1 Y N N N N N 12.478 23.653 16.027 -1.408 1.993 0.211 C33 2S0 24
2S0 C34 C34 C 0 1 Y N N N N N 11.391 23.080 16.673 -1.288 3.337 0.504 C34 2S0 25
2S0 C35 C35 C 0 1 Y N N N N N 11.566 21.933 17.441 -0.349 4.112 -0.166 C35 2S0 26
2S0 C36 C36 C 0 1 Y N N N N N 12.823 21.360 17.556 0.465 3.531 -1.130 C36 2S0 27
2S0 C37 C37 C 0 1 Y N N N N N 13.906 21.943 16.903 0.343 2.185 -1.415 C37 2S0 28
2S0 N38 N38 N 0 1 N N N N N N 10.495 21.388 18.114 -0.225 5.471 0.128 N38 2S0 29
2S0 C39 C39 C 0 1 N N N N N N 9.210 21.813 17.931 0.765 6.287 -0.580 C39 2S0 30
2S0 C40 C40 C 0 1 N N N N N N 10.643 20.385 19.022 -1.085 6.082 1.145 C40 2S0 31
2S0 C31 C31 C 0 1 N N N N N N 19.815 22.043 11.614 4.590 -3.607 -1.986 C31 2S0 32
2S0 C30 C30 C 0 1 N N N N N N 18.443 21.406 11.511 4.220 -2.677 -0.860 C30 2S0 33
2S0 O30 O30 O 0 1 N N N N N N 18.327 20.397 10.791 5.018 -2.440 0.015 O30 2S0 34
2S0 O17 O17 O 0 1 N N N N N N 17.255 21.966 12.174 3.003 -2.111 -0.830 O17 2S0 35
2S0 H1 H1 H 0 1 N N N N N N 13.751 25.996 17.283 -2.646 -0.515 -2.271 H1 2S0 36
2S0 H2 H2 H 0 1 N N N N N N 15.886 27.910 17.613 -4.916 -1.528 -2.817 H2 2S0 37
2S0 H3 H3 H 0 1 N N N N N N 13.712 29.643 14.500 -5.481 -2.514 1.299 H3 2S0 38
2S0 H4 H4 H 0 1 N N N N N N 13.593 28.408 12.646 -3.238 -0.588 2.687 H4 2S0 39
2S0 H5 H5 H 0 1 N N N N N N 12.311 27.257 13.155 -3.697 -2.303 2.861 H5 2S0 40
2S0 H6 H6 H 0 1 N N N N N N 15.067 26.689 12.033 -1.260 -1.956 3.245 H6 2S0 41
2S0 H7 H7 H 0 1 N N N N N N 13.462 26.161 11.423 -1.571 -3.000 1.844 H7 2S0 42
2S0 H8 H8 H 0 1 N N N N N N 13.180 24.681 13.071 -0.670 -0.119 1.894 H8 2S0 43
2S0 H10 H10 H 0 1 N N N N N N 15.776 23.952 16.030 -1.267 -0.163 -2.009 H10 2S0 44
2S0 H11 H11 H 0 1 N N N N N N 15.228 21.707 14.959 0.589 -1.687 -1.579 H11 2S0 45
2S0 H12 H12 H 0 1 N N N N N N 16.513 22.787 14.320 1.273 -0.068 -1.889 H12 2S0 46
2S0 H13 H13 H 0 1 N N N N N N 15.925 24.068 12.316 0.379 -2.625 0.512 H13 2S0 47
2S0 H14 H14 H 0 1 N N N N N N 15.157 24.224 10.184 1.331 -0.982 2.927 H14 2S0 48
2S0 H15 H15 H 0 1 N N N N N N 13.569 23.481 10.573 1.199 -2.764 2.793 H15 2S0 49
2S0 H16 H16 H 0 1 N N N N N N 14.508 21.382 10.290 3.554 -1.377 2.268 H16 2S0 50
2S0 H17 H17 H 0 1 N N N N N N 16.114 22.124 9.980 3.145 -2.931 1.487 H17 2S0 51
2S0 H18 H18 H 0 1 N N N N N N 12.847 22.433 13.794 0.167 0.954 1.031 H18 2S0 52
2S0 H19 H19 H 0 1 N N N N N N 13.009 21.773 12.131 1.805 0.766 1.702 H19 2S0 53
2S0 H20 H20 H 0 1 N N N N N N 13.581 20.814 13.538 1.583 1.466 0.080 H20 2S0 54
2S0 H21 H21 H 0 1 N N N N N N 16.704 18.430 13.377 3.691 -0.056 -1.947 H21 2S0 55
2S0 H22 H22 H 0 1 N N N N N N 17.725 19.904 13.474 4.010 1.543 -1.232 H22 2S0 56
2S0 H23 H23 H 0 1 N N N N N N 16.189 19.813 14.400 5.280 0.295 -1.224 H23 2S0 57
2S0 H25 H25 H 0 1 N N N N N N 12.336 24.544 15.434 -2.138 1.391 0.731 H25 2S0 58
2S0 H26 H26 H 0 1 N N N N N N 10.411 23.524 16.580 -1.922 3.786 1.254 H26 2S0 59
2S0 H27 H27 H 0 1 N N N N N N 12.961 20.467 18.148 1.195 4.130 -1.653 H27 2S0 60
2S0 H28 H28 H 0 1 N N N N N N 14.885 21.496 16.994 0.978 1.732 -2.161 H28 2S0 61
2S0 H29 H29 H 0 1 N N N N N N 8.535 21.230 18.575 0.313 6.709 -1.477 H29 2S0 62
2S0 H30 H30 H 0 1 N N N N N N 9.136 22.879 18.192 1.104 7.093 0.071 H30 2S0 63
2S0 H31 H31 H 0 1 N N N N N N 8.924 21.673 16.878 1.615 5.664 -0.859 H31 2S0 64
2S0 H32 H32 H 0 1 N N N N N N 9.659 20.111 19.430 -0.601 6.014 2.119 H32 2S0 65
2S0 H33 H33 H 0 1 N N N N N N 11.093 19.510 18.531 -1.254 7.130 0.896 H33 2S0 66
2S0 H34 H34 H 0 1 N N N N N N 11.297 20.724 19.839 -2.040 5.558 1.176 H34 2S0 67
2S0 H35 H35 H 0 1 N N N N N N 20.530 21.477 10.999 3.750 -3.698 -2.674 H35 2S0 68
2S0 H36 H36 H 0 1 N N N N N N 19.765 23.082 11.255 5.454 -3.208 -2.518 H36 2S0 69
2S0 H37 H37 H 0 1 N N N N N N 20.146 22.033 12.663 4.835 -4.589 -1.581 H37 2S0 70
2S0 H38 H38 H 0 1 N N N N N N 15.516 25.855 16.981 -4.020 0.249 -1.432 H38 2S0 71
2S0 H39 H39 H 0 1 N N N N N N 14.209 27.891 18.259 -3.715 -2.687 -2.200 H39 2S0 72
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2S0 C16 C15 SING N N 1
2S0 C16 C17 SING N N 2
2S0 O30 C30 DOUB N N 3
2S0 C15 C14 SING N N 4
2S0 O20 C20 DOUB N N 5
2S0 C30 C31 SING N N 6
2S0 C30 O17 SING N N 7
2S0 C17 O17 SING N N 8
2S0 C17 C20 SING N N 9
2S0 C17 C13 SING N N 10
2S0 C20 C21 SING N N 11
2S0 C14 C13 SING N N 12
2S0 C14 C8 SING N N 13
2S0 C7 C8 SING N N 14
2S0 C7 C6 SING N N 15
2S0 C13 C18 SING N N 16
2S0 C13 C12 SING N N 17
2S0 C8 C9 SING N N 18
2S0 C6 C5 SING N N 19
2S0 C12 C11 SING N N 20
2S0 C5 C4 DOUB N N 21
2S0 C5 C10 SING N N 22
2S0 C9 C10 DOUB N N 23
2S0 C9 C11 SING N N 24
2S0 C4 C3 SING N N 25
2S0 C10 C1 SING N N 26
2S0 C11 C32 SING N N 27
2S0 C33 C32 DOUB Y N 28
2S0 C33 C34 SING Y N 29
2S0 C32 C37 SING Y N 30
2S0 C3 O3 DOUB N N 31
2S0 C3 C2 SING N N 32
2S0 C34 C35 DOUB Y N 33
2S0 C1 C2 SING N N 34
2S0 C37 C36 DOUB Y N 35
2S0 C35 C36 SING Y N 36
2S0 C35 N38 SING N N 37
2S0 C39 N38 SING N N 38
2S0 N38 C40 SING N N 39
2S0 C1 H1 SING N N 40
2S0 C2 H2 SING N N 41
2S0 C4 H3 SING N N 42
2S0 C6 H4 SING N N 43
2S0 C6 H5 SING N N 44
2S0 C7 H6 SING N N 45
2S0 C7 H7 SING N N 46
2S0 C8 H8 SING N N 47
2S0 C11 H10 SING N N 48
2S0 C12 H11 SING N N 49
2S0 C12 H12 SING N N 50
2S0 C14 H13 SING N N 51
2S0 C15 H14 SING N N 52
2S0 C15 H15 SING N N 53
2S0 C16 H16 SING N N 54
2S0 C16 H17 SING N N 55
2S0 C18 H18 SING N N 56
2S0 C18 H19 SING N N 57
2S0 C18 H20 SING N N 58
2S0 C21 H21 SING N N 59
2S0 C21 H22 SING N N 60
2S0 C21 H23 SING N N 61
2S0 C33 H25 SING N N 62
2S0 C34 H26 SING N N 63
2S0 C36 H27 SING N N 64
2S0 C37 H28 SING N N 65
2S0 C39 H29 SING N N 66
2S0 C39 H30 SING N N 67
2S0 C39 H31 SING N N 68
2S0 C40 H32 SING N N 69
2S0 C40 H33 SING N N 70
2S0 C40 H34 SING N N 71
2S0 C31 H35 SING N N 72
2S0 C31 H36 SING N N 73
2S0 C31 H37 SING N N 74
2S0 C1 H38 SING N N 75
2S0 C2 H39 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2S0 SMILES ACDLabs 12.01 O=C5C=C1C(=C3C(CC1)C4C(C)(CC3c2ccc(N(C)C)cc2)C(OC(=O)C)(C(=O)C)CC4)CC5
2S0 InChI InChI 1.03 InChI=1S/C30H37NO4/c1-18(32)30(35-19(2)33)15-14-27-25-12-8-21-16-23(34)11-13-24(21)28(25)26(17-29(27,30)3)20-6-9-22(10-7-20)31(4)5/h6-7,9-10,16,25-27H,8,11-15,17H2,1-5H3/t25-,26+,27-,29-,30-/m0/s1
2S0 InChIKey InChI 1.03 OOLLAFOLCSJHRE-ZHAKMVSLSA-N
2S0 SMILES_CANONICAL CACTVS 3.385 CN(C)c1ccc(cc1)[C@H]2C[C@@]3(C)[C@@H](CC[C@]3(OC(C)=O)C(C)=O)[C@@H]4CCC5=CC(=O)CCC5=C24
2S0 SMILES CACTVS 3.385 CN(C)c1ccc(cc1)[CH]2C[C]3(C)[CH](CC[C]3(OC(C)=O)C(C)=O)[CH]4CCC5=CC(=O)CCC5=C24
2S0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(=O)[C@]1(CC[C@@H]2[C@@]1(C[C@@H](C3=C4CCC(=O)C=C4CC[C@@H]23)c5ccc(cc5)N(C)C)C)OC(=O)C
2S0 SMILES "OpenEye OEToolkits" 1.7.6 CC(=O)C1(CCC2C1(CC(C3=C4CCC(=O)C=C4CCC23)c5ccc(cc5)N(C)C)C)OC(=O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2S0 "SYSTEMATIC NAME" ACDLabs 12.01 "(11alpha,13alpha,17beta)-17-acetyl-11-[4-(dimethylamino)phenyl]-3-oxoestra-4,9-dien-17-yl acetate"
2S0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(8S,11R,13S,14S,17R)-11-[4-(dimethylamino)phenyl]-17-ethanoyl-13-methyl-3-oxidanylidene-1,2,6,7,8,11,12,14,15,16-decahydrocyclopenta[a]phenanthren-17-yl] ethanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2S0 'Create component' 2014-01-16 RCSB
2S0 'Modify name' 2014-02-07 RCSB
2S0 'Modify aromatic_flag' 2014-06-19 RCSB
2S0 'Initial release' 2014-10-08 RCSB
2S0 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 2S0
_pdbx_chem_comp_synonyms.name "ulipristal acetate"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 2S0
_pdbe_chem_comp_synonyms.name 'ulipristal acetate'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2S0 C1 C 6.740 -1.341 1
2S0 C2 C 5.318 -2.132 2
2S0 C3 C 5.306 -3.760 3
2S0 C4 C 6.715 -4.574 4
2S0 C5 C 8.118 -3.749 5
2S0 C6 C 9.471 -4.530 6
2S0 C7 C 10.818 -3.739 7
2S0 C8 C 10.794 -2.176 8
2S0 C9 C 9.495 -1.426 9
2S0 C10 C 8.130 -2.187 10
2S0 C11 C 9.495 0.074 11
2S0 C12 C 10.794 0.824 12
2S0 C13 C 12.093 0.074 13
2S0 C14 C 12.093 -1.426 14
2S0 C15 C 13.513 -1.883 15
2S0 C16 C 14.388 -0.676 16
2S0 C17 C 13.513 0.531 17
2S0 C18 C 12.093 1.574 18
2S0 C20 C 15.005 0.685 19
2S0 C21 C 15.884 -0.530 20
2S0 O3 O 4.004 -4.505 21
2S0 O20 O 15.617 2.054 22
2S0 C32 C 8.196 0.824 23
2S0 C33 C 8.196 2.324 24
2S0 C34 C 6.897 3.074 25
2S0 C35 C 5.598 2.324 26
2S0 C36 C 5.598 0.824 27
2S0 C37 C 6.897 0.074 28
2S0 N38 N 4.299 3.074 29
2S0 C39 C 4.299 4.574 30
2S0 C40 C 3.000 2.324 31
2S0 C31 C 12.253 4.430 32
2S0 C30 C 13.366 3.425 33
2S0 O30 O 14.793 3.886 34
2S0 O17 O 13.052 1.958 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2S0 C16 C15 SINGLE NONE 1
2S0 C16 C17 SINGLE NONE 2
2S0 O30 C30 DOUBLE NONE 3
2S0 C15 C14 SINGLE NONE 4
2S0 O20 C20 DOUBLE NONE 5
2S0 C30 C31 SINGLE NONE 6
2S0 C30 O17 SINGLE NONE 7
2S0 C17 O17 SINGLE BEGINDASH 8
2S0 C17 C20 SINGLE NONE 9
2S0 C17 C13 SINGLE NONE 10
2S0 C20 C21 SINGLE NONE 11
2S0 C14 C13 SINGLE NONE 12
2S0 C14 C8 SINGLE NONE 13
2S0 C7 C8 SINGLE NONE 14
2S0 C7 C6 SINGLE NONE 15
2S0 C13 C18 SINGLE BEGINWEDGE 16
2S0 C13 C12 SINGLE NONE 17
2S0 C8 C9 SINGLE NONE 18
2S0 C6 C5 SINGLE NONE 19
2S0 C12 C11 SINGLE NONE 20
2S0 C5 C4 DOUBLE NONE 21
2S0 C5 C10 SINGLE NONE 22
2S0 C9 C10 DOUBLE NONE 23
2S0 C9 C11 SINGLE NONE 24
2S0 C4 C3 SINGLE NONE 25
2S0 C10 C1 SINGLE NONE 26
2S0 C11 C32 SINGLE BEGINWEDGE 27
2S0 C33 C32 DOUBLE NONE 28
2S0 C33 C34 SINGLE NONE 29
2S0 C32 C37 SINGLE NONE 30
2S0 C3 O3 DOUBLE NONE 31
2S0 C3 C2 SINGLE NONE 32
2S0 C34 C35 DOUBLE NONE 33
2S0 C1 C2 SINGLE NONE 34
2S0 C37 C36 DOUBLE NONE 35
2S0 C35 C36 SINGLE NONE 36
2S0 C35 N38 SINGLE NONE 37
2S0 C39 N38 SINGLE NONE 38
2S0 N38 C40 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2S0 MurckoScaffold S1 scaffold 'O=C1C=C2CC[C@@H]3C(=C2CC1)[C@@H](c1ccccc1)CC1CCC[C@H]13' InChI=1S/C23H26O/c24-18-10-12-20-17(13-18)9-11-21-19-8-4-7-16(19)14-22(23(20)21)15-5-2-1-3-6-15/h1-3,5-6,13,16,19,21-22H,4,7-12,14H2/t16-,19+,21-,22+/m0/s1 KITCXGUYSWNGRP-UHVFKWDWSA-N
2S0 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
2S0 cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
2S0 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
2S0 steroid-like F4 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2S0 C1 S1 1
2S0 C2 S1 1
2S0 C3 S1 1
2S0 C4 S1 1
2S0 C5 S1 1
2S0 C6 S1 1
2S0 C7 S1 1
2S0 C8 S1 1
2S0 C9 S1 1
2S0 C10 S1 1
2S0 C11 S1 1
2S0 C12 S1 1
2S0 C13 S1 1
2S0 C14 S1 1
2S0 C15 S1 1
2S0 C16 S1 1
2S0 C17 S1 1
2S0 O3 S1 1
2S0 C32 S1 1
2S0 C33 S1 1
2S0 C34 S1 1
2S0 C35 S1 1
2S0 C36 S1 1
2S0 C37 S1 1
2S0 C8 F1 1
2S0 C14 F1 1
2S0 C13 F1 1
2S0 C12 F1 1
2S0 C11 F1 1
2S0 C9 F1 1
2S0 C13 F2 1
2S0 C17 F2 1
2S0 C16 F2 1
2S0 C15 F2 1
2S0 C14 F2 1
2S0 C32 F3 1
2S0 C33 F3 1
2S0 C34 F3 1
2S0 C35 F3 1
2S0 C36 F3 1
2S0 C37 F3 1
2S0 C2 F4 1
2S0 C3 F4 1
2S0 C4 F4 1
2S0 C5 F4 1
2S0 C10 F4 1
2S0 C1 F4 1
2S0 C9 F4 1
2S0 C8 F4 1
2S0 C7 F4 1
2S0 C6 F4 1
2S0 C14 F4 1
2S0 C13 F4 1
2S0 C12 F4 1
2S0 C11 F4 1
2S0 C17 F4 1
2S0 C16 F4 1
2S0 C15 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2S0
_pdbe_chem_comp_rdkit_properties.exactmw 475.272
_pdbe_chem_comp_rdkit_properties.amw 475.629
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 72
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.567
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 260.129
_pdbe_chem_comp_rdkit_properties.tpsa 63.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.108
_pdbe_chem_comp_rdkit_properties.CrippenMR 135.120
_pdbe_chem_comp_rdkit_properties.chi0v 17.080
_pdbe_chem_comp_rdkit_properties.chi1v 9.441
_pdbe_chem_comp_rdkit_properties.chi2v 5.332
_pdbe_chem_comp_rdkit_properties.chi3v 5.332
_pdbe_chem_comp_rdkit_properties.chi4v 3.830
_pdbe_chem_comp_rdkit_properties.chi0n 54.080
_pdbe_chem_comp_rdkit_properties.chi1n 27.941
_pdbe_chem_comp_rdkit_properties.chi2n 5.332
_pdbe_chem_comp_rdkit_properties.chi3n 5.332
_pdbe_chem_comp_rdkit_properties.chi4n 3.830
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.690
_pdbe_chem_comp_rdkit_properties.kappa1 5.894
_pdbe_chem_comp_rdkit_properties.kappa2 8.460
_pdbe_chem_comp_rdkit_properties.kappa3 3.611
_pdbe_chem_comp_rdkit_properties.Phi 1.425
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2S0 UniChem 'Guide to Pharmacology' 7460
2S0 UniChem ChEBI 71025
2S0 UniChem ZINC ZINC000003920657
2S0 UniChem fdasrs YF7V70N02B
2S0 UniChem SureChEMBL SCHEMBL544957
2S0 UniChem Selleck ulipristal
2S0 UniChem 'PubChem TPHARMA' 14809844
2S0 UniChem 'PubChem TPHARMA' 14907730
2S0 UniChem PubChem 130904
2S0 UniChem ACTor 126784-99-4
2S0 UniChem Nikkaji J533.262A
2S0 UniChem BindingDb 50375424
2S0 UniChem 'EPA CompTox Dashboard' DTXSID30155294
2S0 UniChem DrugCentral 4166
2S0 UniChem ChemicalBook CB31400406
2S0 UniChem DailyMed 'ULIPRISTAL ACETATE'
2S0 UniChem ClinicalTrials CDB-2914
2S0 UniChem ClinicalTrials ELLAONE
2S0 UniChem ClinicalTrials PGL-4001
2S0 UniChem ClinicalTrials RTI-3021-012
2S0 UniChem ClinicalTrials 'ULIPRISTAL ACETATE'
2S0 UniChem ClinicalTrials VA-2914
2S0 UniChem ClinicalTrials VA2914
2S0 UniChem rxnorm ELLA
2S0 UniChem rxnorm 'ULIPRISTAL ACETATE'
2S0 UniChem MedChemExpress HY-16508
2S0 UniChem 'Probes And Drugs' PD008619
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2S0 C1 1.917 -2.548 1.955 ETKDGv3 1
2S0 C2 2.660 -3.887 1.986 ETKDGv3 2
2S0 C3 1.715 -5.020 2.240 ETKDGv3 3
2S0 C4 0.363 -4.985 1.669 ETKDGv3 4
2S0 C5 -0.110 -3.879 1.076 ETKDGv3 5
2S0 C6 -1.495 -3.872 0.500 ETKDGv3 6
2S0 C7 -1.477 -3.069 -0.790 ETKDGv3 7
2S0 C8 -0.968 -1.622 -0.574 ETKDGv3 8
2S0 C9 0.172 -1.505 0.455 ETKDGv3 9
2S0 C10 0.670 -2.607 1.084 ETKDGv3 10
2S0 C11 0.690 -0.091 0.789 ETKDGv3 11
2S0 C12 -0.478 0.936 0.964 ETKDGv3 12
2S0 C13 -1.596 0.818 -0.107 ETKDGv3 13
2S0 C14 -2.078 -0.645 -0.141 ETKDGv3 14
2S0 C15 -3.379 -0.601 -0.936 ETKDGv3 15
2S0 C16 -3.970 0.791 -0.649 ETKDGv3 16
2S0 C17 -2.934 1.550 0.238 ETKDGv3 17
2S0 C18 -1.052 1.331 -1.484 ETKDGv3 18
2S0 C20 -2.855 3.063 0.008 ETKDGv3 19
2S0 C21 -3.667 3.779 -1.034 ETKDGv3 20
2S0 O3 2.102 -6.035 2.878 ETKDGv3 21
2S0 O20 -2.098 3.722 0.706 ETKDGv3 22
2S0 C32 1.805 0.409 -0.128 ETKDGv3 23
2S0 C33 2.229 -0.271 -1.214 ETKDGv3 24
2S0 C34 3.323 0.254 -2.056 ETKDGv3 25
2S0 C35 3.945 1.410 -1.748 ETKDGv3 26
2S0 C36 3.506 2.137 -0.524 ETKDGv3 27
2S0 C37 2.512 1.663 0.234 ETKDGv3 28
2S0 N38 5.021 1.931 -2.573 ETKDGv3 29
2S0 C39 5.941 2.939 -2.034 ETKDGv3 30
2S0 C40 5.198 1.477 -3.959 ETKDGv3 31
2S0 C31 -4.574 1.474 3.732 ETKDGv3 32
2S0 C30 -4.385 1.799 2.290 ETKDGv3 33
2S0 O30 -5.222 2.536 1.703 ETKDGv3 34
2S0 O17 -3.250 1.316 1.622 ETKDGv3 35
2S0 H1 2.636 -1.792 1.573 ETKDGv3 36
2S0 H2 3.160 -4.056 1.008 ETKDGv3 37
2S0 H3 -0.248 -5.879 1.728 ETKDGv3 38
2S0 H4 -2.199 -3.415 1.229 ETKDGv3 39
2S0 H5 -1.845 -4.903 0.274 ETKDGv3 40
2S0 H6 -0.799 -3.583 -1.509 ETKDGv3 41
2S0 H7 -2.485 -3.085 -1.253 ETKDGv3 42
2S0 H8 -0.584 -1.314 -1.565 ETKDGv3 43
2S0 H10 1.145 -0.116 1.801 ETKDGv3 44
2S0 H11 -0.917 0.756 1.969 ETKDGv3 45
2S0 H12 -0.093 1.976 0.990 ETKDGv3 46
2S0 H13 -2.367 -0.950 0.894 ETKDGv3 47
2S0 H14 -4.076 -1.400 -0.602 ETKDGv3 48
2S0 H15 -3.177 -0.724 -2.023 ETKDGv3 49
2S0 H16 -4.145 1.293 -1.622 ETKDGv3 50
2S0 H17 -4.954 0.693 -0.143 ETKDGv3 51
2S0 H18 -1.821 1.282 -2.281 ETKDGv3 52
2S0 H19 -0.176 0.772 -1.846 ETKDGv3 53
2S0 H20 -0.720 2.387 -1.400 ETKDGv3 54
2S0 H21 -4.745 3.552 -0.901 ETKDGv3 55
2S0 H22 -3.338 3.469 -2.048 ETKDGv3 56
2S0 H23 -3.532 4.878 -0.946 ETKDGv3 57
2S0 H25 1.788 -1.212 -1.505 ETKDGv3 58
2S0 H26 3.612 -0.330 -2.918 ETKDGv3 59
2S0 H27 3.986 3.059 -0.226 ETKDGv3 60
2S0 H28 2.232 2.204 1.129 ETKDGv3 61
2S0 H29 5.411 3.907 -1.914 ETKDGv3 62
2S0 H30 6.811 3.102 -2.705 ETKDGv3 63
2S0 H31 6.336 2.603 -1.052 ETKDGv3 64
2S0 H32 4.231 1.534 -4.502 ETKDGv3 65
2S0 H33 5.572 0.432 -3.968 ETKDGv3 66
2S0 H34 5.926 2.110 -4.508 ETKDGv3 67
2S0 H35 -5.652 1.315 3.948 ETKDGv3 68
2S0 H36 -4.017 0.548 3.988 ETKDGv3 69
2S0 H37 -4.194 2.311 4.353 ETKDGv3 70
2S0 H38 1.619 -2.267 2.989 ETKDGv3 71
2S0 H39 3.441 -3.856 2.777 ETKDGv3 72
#