data_2QE
#
_chem_comp.id 2QE
_chem_comp.name "(2S,4R)-4-(3-Methoxy-3-oxopropyl) glutamic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H15 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(4R)-4-(3-methoxy-3-oxopropyl)-L-glutamic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-01-18
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 233.218
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2QE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4NWC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2QE O O O 0 1 N N N N N N 2.778 31.426 12.784 -4.516 -1.549 0.344 O 2QE 1
2QE C C C 0 1 N N N N N N 2.444 30.367 13.350 -3.940 -0.652 -0.224 C 2QE 2
2QE OXT OXT O 0 1 N N N N N N 1.289 30.058 13.715 -4.376 -0.225 -1.419 OXT 2QE 3
2QE CA CA C 0 1 N N S N N N 3.546 29.337 13.582 -2.734 -0.008 0.412 CA 2QE 4
2QE N N N 0 1 N N N N N N 4.845 29.935 13.204 -2.740 -0.278 1.856 N 2QE 5
2QE CB CB C 0 1 N N N N N N 3.542 28.816 15.023 -1.461 -0.584 -0.209 CB 2QE 6
2QE CG CG C 0 1 N N R N N N 4.343 27.511 15.215 -0.242 0.156 0.346 CG 2QE 7
2QE CD2 CD2 C 0 1 N N N N N N 3.592 26.349 14.551 -0.285 1.596 -0.096 CD2 2QE 8
2QE OAG OAG O 0 1 N N N N N N 2.390 26.510 14.257 -1.197 1.990 -0.785 OAG 2QE 9
2QE OAD OAD O 0 1 N N N N N N 4.254 25.302 14.333 0.689 2.441 0.275 OAD 2QE 10
2QE CD1 CD1 C 0 1 N N N N N N 4.598 27.241 16.708 1.036 -0.501 -0.179 CD1 2QE 11
2QE CAH CAH C 0 1 N N N N N N 5.651 28.173 17.343 2.253 0.159 0.473 CAH 2QE 12
2QE CAN CAN C 0 1 N N N N N N 7.014 28.007 16.644 3.512 -0.487 -0.044 CAN 2QE 13
2QE OAE OAE O 0 1 N N N N N N 7.545 26.887 16.586 3.444 -1.384 -0.851 OAE 2QE 14
2QE OAK OAK O 0 1 N N N N N N 7.539 29.158 16.145 4.710 -0.067 0.392 OAK 2QE 15
2QE CAA CAA C 0 1 N N N N N N 8.643 28.991 15.259 5.880 -0.736 -0.149 CAA 2QE 16
2QE H1 H1 H 0 1 N N N N N N 0.688 30.760 13.495 -5.155 -0.665 -1.785 H1 2QE 17
2QE H2 H2 H 0 1 N N N N N N 3.352 28.482 12.917 -2.766 1.068 0.244 H2 2QE 18
2QE H3 H3 H 0 1 N N N N N N 5.575 29.268 13.352 -2.711 -1.270 2.039 H3 2QE 19
2QE H4 H4 H 0 1 N N N N N N 4.823 30.196 12.239 -1.978 0.197 2.316 H4 2QE 20
2QE H6 H6 H 0 1 N N N N N N 3.978 29.589 15.673 -1.384 -1.644 0.035 H6 2QE 21
2QE H7 H7 H 0 1 N N N N N N 2.500 28.631 15.322 -1.497 -0.463 -1.292 H7 2QE 22
2QE H8 H8 H 0 1 N N N N N N 5.315 27.627 14.714 -0.254 0.110 1.435 H8 2QE 23
2QE H9 H9 H 0 1 N N N N N N 3.698 24.657 13.912 0.618 3.355 -0.033 H9 2QE 24
2QE H10 H10 H 0 1 N N N N N N 3.650 27.371 17.250 1.025 -1.563 0.064 H10 2QE 25
2QE H11 H11 H 0 1 N N N N N N 4.944 26.203 16.818 1.091 -0.376 -1.260 H11 2QE 26
2QE H12 H12 H 0 1 N N N N N N 5.759 27.924 18.409 2.264 1.222 0.230 H12 2QE 27
2QE H13 H13 H 0 1 N N N N N N 5.318 29.216 17.242 2.198 0.035 1.554 H13 2QE 28
2QE H14 H14 H 0 1 N N N N N N 8.990 29.976 14.915 5.836 -1.798 0.094 H14 2QE 29
2QE H15 H15 H 0 1 N N N N N N 9.461 28.478 15.785 5.902 -0.611 -1.231 H15 2QE 30
2QE H16 H16 H 0 1 N N N N N N 8.330 28.390 14.393 6.780 -0.301 0.286 H16 2QE 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2QE O C DOUB N N 1
2QE N CA SING N N 2
2QE C CA SING N N 3
2QE C OXT SING N N 4
2QE CA CB SING N N 5
2QE OAG CD2 DOUB N N 6
2QE OAD CD2 SING N N 7
2QE CD2 CG SING N N 8
2QE CB CG SING N N 9
2QE CG CD1 SING N N 10
2QE CAA OAK SING N N 11
2QE OAK CAN SING N N 12
2QE OAE CAN DOUB N N 13
2QE CAN CAH SING N N 14
2QE CD1 CAH SING N N 15
2QE OXT H1 SING N N 16
2QE CA H2 SING N N 17
2QE N H3 SING N N 18
2QE N H4 SING N N 19
2QE CB H6 SING N N 20
2QE CB H7 SING N N 21
2QE CG H8 SING N N 22
2QE OAD H9 SING N N 23
2QE CD1 H10 SING N N 24
2QE CD1 H11 SING N N 25
2QE CAH H12 SING N N 26
2QE CAH H13 SING N N 27
2QE CAA H14 SING N N 28
2QE CAA H15 SING N N 29
2QE CAA H16 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2QE SMILES ACDLabs 12.01 O=C(OC)CCC(C(=O)O)CC(C(=O)O)N
2QE InChI InChI 1.03 InChI=1S/C9H15NO6/c1-16-7(11)3-2-5(8(12)13)4-6(10)9(14)15/h5-6H,2-4,10H2,1H3,(H,12,13)(H,14,15)/t5-,6+/m1/s1
2QE InChIKey InChI 1.03 IPTIKQIFOOZKAT-RITPCOANSA-N
2QE SMILES_CANONICAL CACTVS 3.385 COC(=O)CC[C@H](C[C@H](N)C(O)=O)C(O)=O
2QE SMILES CACTVS 3.385 COC(=O)CC[CH](C[CH](N)C(O)=O)C(O)=O
2QE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 COC(=O)CC[C@H](C[C@@H](C(=O)O)N)C(=O)O
2QE SMILES "OpenEye OEToolkits" 1.7.6 COC(=O)CCC(CC(C(=O)O)N)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2QE "SYSTEMATIC NAME" ACDLabs 12.01 "(4R)-4-(3-methoxy-3-oxopropyl)-L-glutamic acid"
2QE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,4R)-2-azanyl-4-(3-methoxy-3-oxidanylidene-propyl)pentanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2QE 'Create component' 2014-01-18 RCSB
2QE 'Modify name' 2014-02-12 RCSB
2QE 'Initial release' 2014-08-06 RCSB
2QE 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 2QE
_pdbx_chem_comp_synonyms.name "(4R)-4-(3-methoxy-3-oxopropyl)-L-glutamic acid"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 2QE
_pdbe_chem_comp_synonyms.name '(4R)-4-(3-methoxy-3-oxopropyl)-L-glutamic acid'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2QE O O 11.600 1.875 1
2QE C C 10.301 2.625 2
2QE OXT O 10.301 4.125 3
2QE CA C 9.002 1.875 4
2QE N N 9.002 0.375 5
2QE CB C 7.702 2.625 6
2QE CG C 6.404 1.875 7
2QE CD2 C 5.104 2.625 8
2QE OAG O 3.805 1.875 9
2QE OAD O 5.104 4.125 10
2QE CD1 C 6.404 0.375 11
2QE CAH C 5.104 -0.375 12
2QE CAN C 5.104 -1.875 13
2QE OAE O 6.404 -2.625 14
2QE OAK O 3.805 -2.625 15
2QE CAA C 3.805 -4.125 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2QE O C DOUBLE NONE 1
2QE CA N SINGLE BEGINWEDGE 2
2QE C CA SINGLE NONE 3
2QE C OXT SINGLE NONE 4
2QE CA CB SINGLE NONE 5
2QE OAG CD2 DOUBLE NONE 6
2QE OAD CD2 SINGLE NONE 7
2QE CD2 CG SINGLE NONE 8
2QE CG CB SINGLE BEGINWEDGE 9
2QE CG CD1 SINGLE NONE 10
2QE CAA OAK SINGLE NONE 11
2QE OAK CAN SINGLE NONE 12
2QE OAE CAN DOUBLE NONE 13
2QE CAN CAH SINGLE NONE 14
2QE CD1 CAH SINGLE NONE 15
#
_pdbe_chem_comp_substructure.comp_id 2QE
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2QE O F1 1
2QE C F1 1
2QE CA F1 1
2QE N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2QE
_pdbe_chem_comp_rdkit_properties.exactmw 233.090
_pdbe_chem_comp_rdkit_properties.amw 233.220
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 113.549
_pdbe_chem_comp_rdkit_properties.tpsa 126.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.558
_pdbe_chem_comp_rdkit_properties.CrippenMR 52.604
_pdbe_chem_comp_rdkit_properties.chi0v 7.397
_pdbe_chem_comp_rdkit_properties.chi1v 3.402
_pdbe_chem_comp_rdkit_properties.chi2v 1.023
_pdbe_chem_comp_rdkit_properties.chi3v 1.023
_pdbe_chem_comp_rdkit_properties.chi4v 0.442
_pdbe_chem_comp_rdkit_properties.chi0n 22.397
_pdbe_chem_comp_rdkit_properties.chi1n 10.613
_pdbe_chem_comp_rdkit_properties.chi2n 1.023
_pdbe_chem_comp_rdkit_properties.chi3n 1.023
_pdbe_chem_comp_rdkit_properties.chi4n 0.442
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.630
_pdbe_chem_comp_rdkit_properties.kappa1 3.192
_pdbe_chem_comp_rdkit_properties.kappa2 6.781
_pdbe_chem_comp_rdkit_properties.kappa3 5.300
_pdbe_chem_comp_rdkit_properties.Phi 1.353
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2QE UniChem ZINC ZINC000040934342
2QE UniChem 'PubChem TPHARMA' 53799803
2QE UniChem BindingDb 50252048
2QE UniChem PubChem 24905704
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2QE O -3.088 -1.712 -1.385 ETKDGv3 1
2QE C -3.055 -0.451 -1.411 ETKDGv3 2
2QE OXT -3.040 0.215 -2.632 ETKDGv3 3
2QE CA -2.983 0.340 -0.132 ETKDGv3 4
2QE N -3.612 -0.389 0.971 ETKDGv3 5
2QE CB -1.524 0.734 0.206 ETKDGv3 6
2QE CG -0.533 -0.453 0.359 ETKDGv3 7
2QE CD2 -0.895 -1.303 1.547 ETKDGv3 8
2QE OAG -1.187 -2.519 1.388 ETKDGv3 9
2QE OAD -0.902 -0.751 2.826 ETKDGv3 10
2QE CD1 0.925 0.038 0.521 ETKDGv3 11
2QE CAH 1.532 0.554 -0.792 ETKDGv3 12
2QE CAN 2.980 0.880 -0.603 ETKDGv3 13
2QE OAE 3.319 2.036 -0.230 ETKDGv3 14
2QE OAK 3.940 -0.117 -0.798 ETKDGv3 15
2QE CAA 5.331 0.113 -0.610 ETKDGv3 16
2QE H1 -3.069 -0.300 -3.505 ETKDGv3 17
2QE H2 -3.551 1.284 -0.294 ETKDGv3 18
2QE H3 -3.616 0.229 1.814 ETKDGv3 19
2QE H4 -4.617 -0.550 0.728 ETKDGv3 20
2QE H6 -1.519 1.345 1.136 ETKDGv3 21
2QE H7 -1.175 1.403 -0.607 ETKDGv3 22
2QE H8 -0.578 -1.087 -0.554 ETKDGv3 23
2QE H9 -1.145 -1.313 3.633 ETKDGv3 24
2QE H10 1.553 -0.811 0.875 ETKDGv3 25
2QE H11 0.973 0.836 1.295 ETKDGv3 26
2QE H12 1.004 1.467 -1.137 ETKDGv3 27
2QE H13 1.439 -0.220 -1.583 ETKDGv3 28
2QE H14 5.682 0.908 -1.302 ETKDGv3 29
2QE H15 5.528 0.415 0.440 ETKDGv3 30
2QE H16 5.887 -0.822 -0.826 ETKDGv3 31
#