data_2PX
#
_chem_comp.id 2PX
_chem_comp.name N-{1-[(5-methyl-1H-indol-3-yl)methyl]piperidin-4-yl}-L-tryptophanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H31 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-12-25
_chem_comp.pdbx_modified_date 2014-03-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 429.557
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2PX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4NYI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2PX O01 O01 O 0 1 N N N N N N 40.873 28.472 19.112 -2.014 -2.970 -1.303 O01 2PX 1
2PX C02 C02 C 0 1 N N N N N N 40.484 28.782 20.240 -1.697 -1.814 -1.116 C02 2PX 2
2PX C03 C03 C 0 1 N N S N N N 41.367 29.560 21.178 -2.757 -0.746 -1.032 C03 2PX 3
2PX C04 C04 C 0 1 N N N N N N 41.361 30.993 20.770 -3.030 -0.414 0.436 C04 2PX 4
2PX C05 C05 C 0 1 Y N N N N N 40.224 31.670 21.502 -3.999 0.738 0.518 C05 2PX 5
2PX C06 C06 C 0 1 Y N N N N N 40.026 31.676 22.869 -3.687 2.037 0.651 C06 2PX 6
2PX N07 N07 N 0 1 Y N N N N N 38.902 32.378 23.136 -4.828 2.790 0.690 N07 2PX 7
2PX C08 C08 C 0 1 Y N N N N N 38.349 32.833 21.969 -5.932 1.973 0.580 C08 2PX 8
2PX C09 C09 C 0 1 Y N N N N N 39.176 32.392 20.920 -5.461 0.653 0.462 C09 2PX 9
2PX C10 C10 C 0 1 Y N N N N N 38.852 32.717 19.611 -6.367 -0.401 0.328 C10 2PX 10
2PX C11 C11 C 0 1 Y N N N N N 37.689 33.470 19.415 -7.708 -0.143 0.308 C11 2PX 11
2PX C12 C12 C 0 1 Y N N N N N 36.887 33.894 20.469 -8.178 1.158 0.421 C12 2PX 12
2PX C13 C13 C 0 1 Y N N N N N 37.192 33.588 21.786 -7.302 2.212 0.562 C13 2PX 13
2PX N14 N14 N 0 1 N N N N N N 42.696 29.025 21.169 -3.992 -1.232 -1.662 N14 2PX 14
2PX N15 N15 N 0 1 N N N N N N 39.159 28.423 20.736 -0.397 -1.485 -0.978 N15 2PX 15
2PX C16 C16 C 0 1 N N N N N N 38.185 27.672 19.940 0.633 -2.524 -1.054 C16 2PX 16
2PX C17 C17 C 0 1 N N N N N N 37.670 28.562 18.893 0.810 -3.171 0.323 C17 2PX 17
2PX C18 C18 C 0 1 N N N N N N 37.057 29.786 19.471 1.289 -2.113 1.320 C18 2PX 18
2PX C19 C19 C 0 1 N N N N N N 37.128 27.260 20.880 1.960 -1.897 -1.490 C19 2PX 19
2PX C20 C20 C 0 1 N N N N N N 36.374 28.410 21.461 2.406 -0.877 -0.440 C20 2PX 20
2PX N21 N21 N 0 1 N N N N N N 36.063 29.467 20.504 2.562 -1.544 0.859 N21 2PX 21
2PX C22 C22 C 0 1 N N N N N N 35.082 30.524 20.744 3.121 -0.625 1.859 C22 2PX 22
2PX C23 C23 C 0 1 Y N N N N N 34.002 30.209 21.766 4.528 -0.254 1.469 C23 2PX 23
2PX C24 C24 C 0 1 Y N N N N N 32.721 29.798 21.497 5.659 -0.782 1.964 C24 2PX 24
2PX N25 N25 N 0 1 Y N N N N N 32.061 29.641 22.681 6.745 -0.197 1.371 N25 2PX 25
2PX C26 C26 C 0 1 Y N N N N N 32.888 29.960 23.735 6.328 0.744 0.457 C26 2PX 26
2PX C27 C27 C 0 1 Y N N N N N 34.114 30.326 23.163 4.922 0.746 0.474 C27 2PX 27
2PX C28 C28 C 0 1 Y N N N N N 35.161 30.702 24.015 4.216 1.609 -0.366 C28 2PX 28
2PX C29 C29 C 0 1 Y N N N N N 34.959 30.702 25.404 4.896 2.446 -1.205 C29 2PX 29
2PX C30 C30 C 0 1 N N N N N N 36.083 31.110 26.259 4.133 3.378 -2.111 C30 2PX 30
2PX C31 C31 C 0 1 Y N N N N N 33.717 30.324 25.942 6.284 2.447 -1.228 C31 2PX 31
2PX C32 C32 C 0 1 Y N N N N N 32.654 29.948 25.129 7.000 1.609 -0.402 C32 2PX 32
2PX H1 H1 H 0 1 N N N N N N 40.949 29.482 22.193 -2.413 0.149 -1.549 H1 2PX 33
2PX H2 H2 H 0 1 N N N N N N 42.317 31.465 21.042 -3.458 -1.284 0.933 H2 2PX 34
2PX H3 H3 H 0 1 N N N N N N 41.209 31.073 19.684 -2.096 -0.138 0.926 H3 2PX 35
2PX H4 H4 H 0 1 N N N N N N 40.662 31.200 23.601 -2.683 2.429 0.719 H4 2PX 36
2PX H5 H5 H 0 1 N N N N N N 38.530 32.541 24.050 -4.857 3.755 0.781 H5 2PX 37
2PX H6 H6 H 0 1 N N N N N N 39.469 32.403 18.782 -6.009 -1.416 0.240 H6 2PX 38
2PX H7 H7 H 0 1 N N N N N N 37.403 33.732 18.407 -8.409 -0.959 0.205 H7 2PX 39
2PX H8 H8 H 0 1 N N N N N N 36.003 34.477 20.256 -9.242 1.346 0.403 H8 2PX 40
2PX H9 H9 H 0 1 N N N N N N 36.576 33.912 22.612 -7.677 3.221 0.649 H9 2PX 41
2PX H10 H10 H 0 1 N N N N N N 43.272 29.550 21.796 -4.332 -2.062 -1.199 H10 2PX 42
2PX H11 H11 H 0 1 N N N N N N 42.672 28.069 21.461 -4.699 -0.512 -1.676 H11 2PX 43
2PX H13 H13 H 0 1 N N N N N N 38.904 28.703 21.662 -0.144 -0.561 -0.829 H13 2PX 44
2PX H14 H14 H 0 1 N N N N N N 38.660 26.788 19.490 0.333 -3.282 -1.778 H14 2PX 45
2PX H15 H15 H 0 1 N N N N N N 36.910 28.023 18.308 -0.143 -3.581 0.657 H15 2PX 46
2PX H16 H16 H 0 1 N N N N N N 38.500 28.855 18.233 1.549 -3.970 0.257 H16 2PX 47
2PX H17 H17 H 0 1 N N N N N N 37.850 30.403 19.919 0.543 -1.321 1.395 H17 2PX 48
2PX H18 H18 H 0 1 N N N N N N 36.564 30.351 18.666 1.429 -2.573 2.298 H18 2PX 49
2PX H19 H19 H 0 1 N N N N N N 36.418 26.612 20.345 2.717 -2.676 -1.584 H19 2PX 50
2PX H20 H20 H 0 1 N N N N N N 37.592 26.696 21.702 1.830 -1.399 -2.450 H20 2PX 51
2PX H21 H21 H 0 1 N N N N N N 36.978 28.845 22.271 3.358 -0.439 -0.740 H21 2PX 52
2PX H22 H22 H 0 1 N N N N N N 35.428 28.029 21.874 1.655 -0.091 -0.356 H22 2PX 53
2PX H24 H24 H 0 1 N N N N N N 35.625 31.415 21.092 2.508 0.275 1.908 H24 2PX 54
2PX H25 H25 H 0 1 N N N N N N 34.586 30.747 19.788 3.130 -1.112 2.834 H25 2PX 55
2PX H26 H26 H 0 1 N N N N N N 32.305 29.628 20.515 5.705 -1.553 2.719 H26 2PX 56
2PX H27 H27 H 0 1 N N N N N N 31.112 29.338 22.771 7.670 -0.414 1.566 H27 2PX 57
2PX H28 H28 H 0 1 N N N N N N 36.118 30.990 23.605 3.136 1.614 -0.354 H28 2PX 58
2PX H29 H29 H 0 1 N N N N N N 36.042 32.197 26.425 3.961 4.324 -1.599 H29 2PX 59
2PX H30 H30 H 0 1 N N N N N N 36.016 30.589 27.225 4.710 3.555 -3.019 H30 2PX 60
2PX H31 H31 H 0 1 N N N N N N 37.032 30.850 25.767 3.175 2.927 -2.372 H31 2PX 61
2PX H32 H32 H 0 1 N N N N N N 33.585 30.326 27.014 6.807 3.114 -1.896 H32 2PX 62
2PX H33 H33 H 0 1 N N N N N N 31.698 29.661 25.541 8.080 1.615 -0.428 H33 2PX 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2PX C17 C18 SING N N 1
2PX C17 C16 SING N N 2
2PX O01 C02 DOUB N N 3
2PX C11 C10 DOUB Y N 4
2PX C11 C12 SING Y N 5
2PX C18 N21 SING N N 6
2PX C10 C09 SING Y N 7
2PX C16 N15 SING N N 8
2PX C16 C19 SING N N 9
2PX C02 N15 SING N N 10
2PX C02 C03 SING N N 11
2PX C12 C13 DOUB Y N 12
2PX N21 C22 SING N N 13
2PX N21 C20 SING N N 14
2PX C22 C23 SING N N 15
2PX C04 C03 SING N N 16
2PX C04 C05 SING N N 17
2PX C19 C20 SING N N 18
2PX C09 C05 SING Y N 19
2PX C09 C08 DOUB Y N 20
2PX N14 C03 SING N N 21
2PX C24 C23 DOUB Y N 22
2PX C24 N25 SING Y N 23
2PX C05 C06 DOUB Y N 24
2PX C23 C27 SING Y N 25
2PX C13 C08 SING Y N 26
2PX C08 N07 SING Y N 27
2PX N25 C26 SING Y N 28
2PX C06 N07 SING Y N 29
2PX C27 C26 DOUB Y N 30
2PX C27 C28 SING Y N 31
2PX C26 C32 SING Y N 32
2PX C28 C29 DOUB Y N 33
2PX C32 C31 DOUB Y N 34
2PX C29 C31 SING Y N 35
2PX C29 C30 SING N N 36
2PX C03 H1 SING N N 37
2PX C04 H2 SING N N 38
2PX C04 H3 SING N N 39
2PX C06 H4 SING N N 40
2PX N07 H5 SING N N 41
2PX C10 H6 SING N N 42
2PX C11 H7 SING N N 43
2PX C12 H8 SING N N 44
2PX C13 H9 SING N N 45
2PX N14 H10 SING N N 46
2PX N14 H11 SING N N 47
2PX N15 H13 SING N N 48
2PX C16 H14 SING N N 49
2PX C17 H15 SING N N 50
2PX C17 H16 SING N N 51
2PX C18 H17 SING N N 52
2PX C18 H18 SING N N 53
2PX C19 H19 SING N N 54
2PX C19 H20 SING N N 55
2PX C20 H21 SING N N 56
2PX C20 H22 SING N N 57
2PX C22 H24 SING N N 58
2PX C22 H25 SING N N 59
2PX C24 H26 SING N N 60
2PX N25 H27 SING N N 61
2PX C28 H28 SING N N 62
2PX C30 H29 SING N N 63
2PX C30 H30 SING N N 64
2PX C30 H31 SING N N 65
2PX C31 H32 SING N N 66
2PX C32 H33 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2PX SMILES ACDLabs 12.01 O=C(NC3CCN(Cc1cnc2ccc(cc12)C)CC3)C(N)Cc5c4ccccc4nc5
2PX InChI InChI 1.03 InChI=1S/C26H31N5O/c1-17-6-7-25-22(12-17)19(15-29-25)16-31-10-8-20(9-11-31)30-26(32)23(27)13-18-14-28-24-5-3-2-4-21(18)24/h2-7,12,14-15,20,23,28-29H,8-11,13,16,27H2,1H3,(H,30,32)/t23-/m0/s1
2PX InChIKey InChI 1.03 HAGXHOXTZOWANA-QHCPKHFHSA-N
2PX SMILES_CANONICAL CACTVS 3.385 Cc1ccc2[nH]cc(CN3CCC(CC3)NC(=O)[C@@H](N)Cc4c[nH]c5ccccc45)c2c1
2PX SMILES CACTVS 3.385 Cc1ccc2[nH]cc(CN3CCC(CC3)NC(=O)[CH](N)Cc4c[nH]c5ccccc45)c2c1
2PX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1ccc2c(c1)c(c[nH]2)CN3CCC(CC3)NC(=O)[C@H](Cc4c[nH]c5c4cccc5)N
2PX SMILES "OpenEye OEToolkits" 1.7.6 Cc1ccc2c(c1)c(c[nH]2)CN3CCC(CC3)NC(=O)C(Cc4c[nH]c5c4cccc5)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2PX "SYSTEMATIC NAME" ACDLabs 12.01 N-{1-[(5-methyl-1H-indol-3-yl)methyl]piperidin-4-yl}-L-tryptophanamide
2PX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2S)-2-azanyl-3-(1H-indol-3-yl)-N-[1-[(5-methyl-1H-indol-3-yl)methyl]piperidin-4-yl]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2PX 'Create component' 2013-12-25 RCSB
2PX 'Initial release' 2014-03-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2PX O01 O 14.118 1.815 1
2PX C02 C 15.119 0.699 2
2PX C03 C 16.587 1.008 3
2PX C04 C 17.053 2.434 4
2PX C05 C 18.521 2.744 5
2PX C06 C 19.627 1.743 6
2PX N07 N 20.921 2.483 7
2PX C08 C 20.620 3.943 8
2PX C09 C 19.129 4.105 9
2PX C10 C 18.523 5.478 10
2PX C11 C 19.409 6.688 11
2PX C12 C 20.900 6.526 12
2PX C13 C 21.506 5.154 13
2PX N14 N 17.589 -0.108 14
2PX N15 N 14.653 -0.727 15
2PX C16 C 13.186 -1.036 16
2PX C17 C 12.184 0.080 17
2PX C18 C 10.716 -0.229 18
2PX C19 C 12.720 -2.462 19
2PX C20 C 11.252 -2.771 20
2PX N21 N 10.250 -1.655 21
2PX C22 C 8.783 -1.964 22
2PX C23 C 8.316 -3.390 23
2PX C24 C 9.192 -4.597 24
2PX N25 N 8.316 -5.804 25
2PX C26 C 6.897 -5.347 26
2PX C27 C 6.897 -3.847 27
2PX C28 C 5.598 -3.097 28
2PX C29 C 4.299 -3.847 29
2PX C30 C 3.000 -3.097 30
2PX C31 C 4.299 -5.347 31
2PX C32 C 5.598 -6.097 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2PX C17 C18 SINGLE NONE 1
2PX C17 C16 SINGLE NONE 2
2PX O01 C02 DOUBLE NONE 3
2PX C11 C10 DOUBLE NONE 4
2PX C11 C12 SINGLE NONE 5
2PX C18 N21 SINGLE NONE 6
2PX C10 C09 SINGLE NONE 7
2PX C16 N15 SINGLE NONE 8
2PX C16 C19 SINGLE NONE 9
2PX C02 N15 SINGLE NONE 10
2PX C02 C03 SINGLE NONE 11
2PX C12 C13 DOUBLE NONE 12
2PX N21 C22 SINGLE NONE 13
2PX N21 C20 SINGLE NONE 14
2PX C22 C23 SINGLE NONE 15
2PX C04 C03 SINGLE NONE 16
2PX C04 C05 SINGLE NONE 17
2PX C19 C20 SINGLE NONE 18
2PX C09 C05 SINGLE NONE 19
2PX C09 C08 DOUBLE NONE 20
2PX C03 N14 SINGLE BEGINDASH 21
2PX C24 C23 DOUBLE NONE 22
2PX C24 N25 SINGLE NONE 23
2PX C05 C06 DOUBLE NONE 24
2PX C23 C27 SINGLE NONE 25
2PX C13 C08 SINGLE NONE 26
2PX C08 N07 SINGLE NONE 27
2PX N25 C26 SINGLE NONE 28
2PX C06 N07 SINGLE NONE 29
2PX C27 C26 DOUBLE NONE 30
2PX C27 C28 SINGLE NONE 31
2PX C26 C32 SINGLE NONE 32
2PX C28 C29 DOUBLE NONE 33
2PX C32 C31 DOUBLE NONE 34
2PX C29 C31 SINGLE NONE 35
2PX C29 C30 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2PX MurckoScaffold S1 scaffold 'O=C(CCc1c[nH]c2ccccc12)NC1CCN(Cc2c[nH]c3ccccc23)CC1' InChI=1S/C25H28N4O/c30-25(10-9-18-15-26-23-7-3-1-5-21(18)23)28-20-11-13-29(14-12-20)17-19-16-27-24-8-4-2-6-22(19)24/h1-8,15-16,20,26-27H,9-14,17H2,(H,28,30) MMWYCSGTMACPQI-UHFFFAOYSA-N
2PX amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
2PX indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
2PX peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
2PX phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
2PX pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2PX O01 S1 1
2PX C02 S1 1
2PX C03 S1 1
2PX C04 S1 1
2PX C05 S1 1
2PX C06 S1 1
2PX N07 S1 1
2PX C08 S1 1
2PX C09 S1 1
2PX C10 S1 1
2PX C11 S1 1
2PX C12 S1 1
2PX C13 S1 1
2PX N15 S1 1
2PX C16 S1 1
2PX C17 S1 1
2PX C18 S1 1
2PX C19 S1 1
2PX C20 S1 1
2PX N21 S1 1
2PX C22 S1 1
2PX C23 S1 1
2PX C24 S1 1
2PX N25 S1 1
2PX C26 S1 1
2PX C27 S1 1
2PX C28 S1 1
2PX C29 S1 1
2PX C31 S1 1
2PX C32 S1 1
2PX N15 F1 1
2PX C02 F1 1
2PX O01 F1 1
2PX C03 F1 1
2PX C08 F2 1
2PX C09 F2 1
2PX C05 F2 1
2PX C06 F2 1
2PX N07 F2 1
2PX C10 F2 1
2PX C11 F2 1
2PX C12 F2 1
2PX C13 F2 1
2PX C26 F2 2
2PX C27 F2 2
2PX C23 F2 2
2PX C24 F2 2
2PX N25 F2 2
2PX C28 F2 2
2PX C29 F2 2
2PX C31 F2 2
2PX C32 F2 2
2PX O01 F3 1
2PX C02 F3 1
2PX C03 F3 1
2PX N14 F3 1
2PX C08 F4 1
2PX C09 F4 1
2PX C10 F4 1
2PX C11 F4 1
2PX C12 F4 1
2PX C13 F4 1
2PX C26 F4 2
2PX C27 F4 2
2PX C28 F4 2
2PX C29 F4 2
2PX C31 F4 2
2PX C32 F4 2
2PX C06 F5 1
2PX C05 F5 1
2PX C09 F5 1
2PX C08 F5 1
2PX N07 F5 1
2PX C24 F5 2
2PX C23 F5 2
2PX C27 F5 2
2PX C26 F5 2
2PX N25 F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 2PX
_pdbe_chem_comp_rdkit_properties.exactmw 429.253
_pdbe_chem_comp_rdkit_properties.amw 429.568
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.346
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 231.569
_pdbe_chem_comp_rdkit_properties.tpsa 89.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.587
_pdbe_chem_comp_rdkit_properties.CrippenMR 124.246
_pdbe_chem_comp_rdkit_properties.chi0v 15.644
_pdbe_chem_comp_rdkit_properties.chi1v 8.690
_pdbe_chem_comp_rdkit_properties.chi2v 3.975
_pdbe_chem_comp_rdkit_properties.chi3v 3.975
_pdbe_chem_comp_rdkit_properties.chi4v 2.569
_pdbe_chem_comp_rdkit_properties.chi0n 46.644
_pdbe_chem_comp_rdkit_properties.chi1n 23.926
_pdbe_chem_comp_rdkit_properties.chi2n 3.975
_pdbe_chem_comp_rdkit_properties.chi3n 3.975
_pdbe_chem_comp_rdkit_properties.chi4n 2.569
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.090
_pdbe_chem_comp_rdkit_properties.kappa1 5.514
_pdbe_chem_comp_rdkit_properties.kappa2 8.805
_pdbe_chem_comp_rdkit_properties.kappa3 4.288
_pdbe_chem_comp_rdkit_properties.Phi 1.517
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2PX UniChem ZINC ZINC000098208232
2PX UniChem PubChem 73167574
2PX UniChem BindingDb 50280737
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2PX O01 2.153 -0.284 -2.354 ETKDGv3 1
2PX C02 2.226 -0.258 -1.095 ETKDGv3 2
2PX C03 3.391 0.446 -0.442 ETKDGv3 3
2PX C04 4.219 -0.534 0.407 ETKDGv3 4
2PX C05 5.478 0.112 0.907 ETKDGv3 5
2PX C06 5.645 0.693 2.096 ETKDGv3 6
2PX N07 6.944 1.279 2.189 ETKDGv3 7
2PX C08 7.533 1.008 0.927 ETKDGv3 8
2PX C09 6.708 0.331 0.153 ETKDGv3 9
2PX C10 7.078 -0.044 -1.223 ETKDGv3 10
2PX C11 8.292 0.319 -1.674 ETKDGv3 11
2PX C12 9.228 1.083 -0.797 ETKDGv3 12
2PX C13 8.866 1.418 0.456 ETKDGv3 13
2PX N14 2.932 1.577 0.370 ETKDGv3 14
2PX N15 1.207 -0.891 -0.303 ETKDGv3 15
2PX C16 0.030 -1.524 -0.909 ETKDGv3 16
2PX C17 -0.670 -2.461 0.103 ETKDGv3 17
2PX C18 -1.765 -1.718 0.880 ETKDGv3 18
2PX C19 -0.929 -0.435 -1.443 ETKDGv3 19
2PX C20 -2.386 -0.908 -1.397 ETKDGv3 20
2PX N21 -2.835 -1.184 -0.006 ETKDGv3 21
2PX C22 -4.031 -2.052 0.008 ETKDGv3 22
2PX C23 -5.200 -1.363 -0.631 ETKDGv3 23
2PX C24 -5.820 -1.734 -1.753 ETKDGv3 24
2PX N25 -6.855 -0.807 -2.082 ETKDGv3 25
2PX C26 -6.786 0.164 -1.048 ETKDGv3 26
2PX C27 -5.835 -0.128 -0.185 ETKDGv3 27
2PX C28 -5.538 0.749 0.960 ETKDGv3 28
2PX C29 -6.281 1.865 1.123 ETKDGv3 29
2PX C30 -5.988 2.808 2.250 ETKDGv3 30
2PX C31 -7.354 2.197 0.131 ETKDGv3 31
2PX C32 -7.600 1.381 -0.911 ETKDGv3 32
2PX H1 4.051 0.844 -1.246 ETKDGv3 33
2PX H2 3.624 -0.903 1.271 ETKDGv3 34
2PX H3 4.498 -1.417 -0.209 ETKDGv3 35
2PX H4 4.898 0.744 2.878 ETKDGv3 36
2PX H5 7.347 1.821 2.985 ETKDGv3 37
2PX H6 6.392 -0.594 -1.854 ETKDGv3 38
2PX H7 8.595 0.059 -2.680 ETKDGv3 39
2PX H8 10.201 1.370 -1.173 ETKDGv3 40
2PX H9 9.535 1.975 1.098 ETKDGv3 41
2PX H10 2.393 2.232 -0.242 ETKDGv3 42
2PX H11 2.282 1.239 1.116 ETKDGv3 43
2PX H13 1.305 -0.888 0.737 ETKDGv3 44
2PX H14 0.365 -2.158 -1.760 ETKDGv3 45
2PX H15 -1.138 -3.311 -0.441 ETKDGv3 46
2PX H16 0.067 -2.899 0.811 ETKDGv3 47
2PX H17 -1.302 -0.866 1.423 ETKDGv3 48
2PX H18 -2.170 -2.394 1.665 ETKDGv3 49
2PX H19 -0.842 0.490 -0.831 ETKDGv3 50
2PX H20 -0.656 -0.176 -2.489 ETKDGv3 51
2PX H21 -3.025 -0.110 -1.832 ETKDGv3 52
2PX H22 -2.486 -1.812 -2.041 ETKDGv3 53
2PX H24 -4.330 -2.274 1.056 ETKDGv3 54
2PX H25 -3.820 -3.023 -0.495 ETKDGv3 55
2PX H26 -5.569 -2.602 -2.349 ETKDGv3 56
2PX H27 -7.488 -0.821 -2.912 ETKDGv3 57
2PX H28 -4.737 0.499 1.645 ETKDGv3 58
2PX H29 -6.869 3.450 2.461 ETKDGv3 59
2PX H30 -5.741 2.245 3.175 ETKDGv3 60
2PX H31 -5.128 3.455 1.977 ETKDGv3 61
2PX H32 -7.937 3.101 0.247 ETKDGv3 62
2PX H33 -8.372 1.617 -1.632 ETKDGv3 63
#