data_2L0
#
_chem_comp.id 2L0
_chem_comp.name 'N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-leucinamide'
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C29 H49 N3 O6'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 'PHQ-LEU-LEU-LEU-EPOXYKETONE, bound form'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-11-25
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 535.716
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2L0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4NO9
_chem_comp.pdbx_subcomponent_list 'PHQ LEU LEU 05W'
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2L0 C7 C7 C 0 1 N N N N N N 58.889 -135.313 34.360 -4.378 -0.771 0.486 C1 PHQ 1
2L0 O8 O8 O 0 1 N N N N N N 58.743 -136.510 34.614 -4.311 -1.282 1.587 O1 PHQ 2
2L0 O6 O6 O 0 1 N N N N N N 57.933 -134.624 33.662 -5.541 -0.245 0.058 O2 PHQ 3
2L0 C5 C5 C 0 1 N N N N N N 56.783 -135.370 33.210 -6.673 -0.323 0.964 C2 PHQ 4
2L0 C4 C4 C 0 1 Y N N N N N 55.701 -135.149 34.068 -7.878 0.312 0.319 C3 PHQ 5
2L0 C3 C3 C 0 1 Y N N N N N 54.751 -134.172 33.766 -8.122 1.662 0.490 C4 PHQ 6
2L0 C2 C2 C 0 1 Y N N N N N 53.670 -133.950 34.617 -9.227 2.245 -0.102 C5 PHQ 7
2L0 C1 C1 C 0 1 Y N N N N N 53.533 -134.708 35.779 -10.087 1.478 -0.865 C6 PHQ 8
2L0 C32 C32 C 0 1 Y N N N N N 54.478 -135.686 36.085 -9.843 0.129 -1.037 C7 PHQ 9
2L0 C31 C31 C 0 1 Y N N N N N 55.559 -135.907 35.232 -8.735 -0.453 -0.449 C8 PHQ 10
2L0 N9 N9 N 0 1 N N N N N N 59.999 -134.668 34.772 -3.287 -0.727 -0.304 N LEU 11
2L0 C10 C10 C 0 1 N N S N N N 61.062 -135.351 35.535 -1.995 -1.194 0.205 CA LEU 12
2L0 C15 C15 C 0 1 N N N N N N 60.599 -135.574 36.979 -0.884 -0.449 -0.488 C LEU 13
2L0 O30 O30 O 0 1 N N N N N N 59.924 -134.724 37.559 -1.088 0.089 -1.556 O LEU 14
2L0 C11 C11 C 0 1 N N N N N N 62.343 -134.506 35.580 -1.852 -2.693 -0.067 CB LEU 15
2L0 C12 C12 C 0 1 N N N N N N 62.963 -134.306 34.190 -0.566 -3.208 0.582 CG LEU 16
2L0 C13 C13 C 0 1 N N N N N N 64.211 -133.428 34.335 -0.694 -3.124 2.105 CD1 LEU 17
2L0 C14 C14 C 0 1 N N N N N N 63.359 -135.648 33.565 -0.334 -4.664 0.170 CD2 LEU 18
2L0 N16 N16 N 0 1 N N N N N N 60.996 -136.739 37.524 0.337 -0.381 0.078 N LEU 19
2L0 C17 C17 C 0 1 N N S N N N 60.657 -137.119 38.910 1.387 0.432 -0.540 CA LEU 20
2L0 C22 C22 C 0 1 N N N N N N 61.909 -136.960 39.780 2.738 -0.101 -0.137 C LEU 21
2L0 O23 O23 O 0 1 N N N N N N 63.000 -136.706 39.271 2.816 -1.065 0.595 O LEU 22
2L0 C18 C18 C 0 1 N N N N N N 60.106 -138.549 38.943 1.251 1.882 -0.072 CB LEU 23
2L0 C19 C19 C 0 1 N N N N N N 58.572 -138.516 39.017 -0.067 2.463 -0.588 CG LEU 24
2L0 C20 C20 C 0 1 N N N N N N 57.980 -137.782 37.807 -0.263 3.869 -0.019 CD1 LEU 25
2L0 C21 C21 C 0 1 N N N N N N 58.051 -139.954 39.032 -0.031 2.532 -2.116 CD2 LEU 26
2L0 N24 N24 N 0 1 N N N N N N 61.697 -137.085 41.103 3.860 0.494 -0.590 N4 05W 27
2L0 C25 C25 C 0 1 N N S N N N 62.763 -136.826 42.079 5.170 -0.087 -0.288 C16 05W 28
2L0 C26 C26 C 0 1 N N N N N N 62.503 -135.350 42.473 5.537 -1.105 -1.370 C25 05W 29
2L0 C27 C27 C 0 1 N N N N N N 63.762 -134.480 42.424 6.827 -1.827 -0.975 C26 05W 30
2L0 C29 C29 C 0 1 N N N N N N 64.331 -134.393 40.998 6.577 -2.667 0.279 C28 05W 31
2L0 C28 C28 C 0 1 N N N N N N 63.414 -133.067 42.925 7.273 -2.739 -2.120 C27 05W 32
2L0 C33 C33 C 0 1 N N S N N N 62.724 -137.765 43.316 6.224 1.021 -0.252 C17 05W 33
2L0 C34 C34 C 0 1 N N R N N N 63.522 -139.077 43.055 5.833 2.062 0.799 C22 05W 34
2L0 C45 C45 C 0 1 N N N N N N 64.706 -138.588 42.484 6.912 3.144 0.871 C23 05W 35
2L0 C35 C35 C 0 1 N N N N N N 62.897 -139.964 41.961 5.698 1.384 2.163 C24 05W 36
2L0 O40 O40 O 0 1 N N N N N N 61.525 -140.250 42.252 5.221 2.331 3.121 O7 05W 37
2L0 O43 O43 O 0 1 N N N N N N 61.351 -138.053 43.663 6.303 1.645 -1.535 O4 05W 38
2L0 H1 H1 H 0 1 N N N N N N 56.514 -135.045 32.194 -6.889 -1.368 1.187 H21 PHQ 39
2L0 H2 H2 H 0 1 N N N N N N 57.026 -136.443 33.199 -6.436 0.204 1.888 H22 PHQ 40
2L0 H19 H19 H 0 1 N N N N N N 54.854 -133.584 32.866 -7.450 2.261 1.087 H41 PHQ 41
2L0 H20 H20 H 0 1 N N N N N N 52.939 -133.192 34.377 -9.419 3.299 0.033 H51 PHQ 42
2L0 H21 H21 H 0 1 N N N N N N 52.697 -134.538 36.441 -10.951 1.934 -1.327 H61 PHQ 43
2L0 H22 H22 H 0 1 N N N N N N 54.373 -136.274 36.985 -10.515 -0.470 -1.634 H71 PHQ 44
2L0 H23 H23 H 0 1 N N N N N N 56.288 -136.666 35.472 -8.542 -1.507 -0.586 H81 PHQ 45
2L0 H24 H24 H 0 1 N N N N N N 60.105 -133.698 34.554 -3.358 -0.386 -1.209 H LEU 46
2L0 H3 H3 H 0 1 N N N N N N 61.288 -136.324 35.074 -1.940 -1.013 1.278 HA LEU 47
2L0 H25 H25 H 0 1 N N N N N N 63.077 -135.012 36.224 -2.708 -3.222 0.352 HB2 LEU 48
2L0 H26 H26 H 0 1 N N N N N N 62.101 -133.520 36.004 -1.810 -2.865 -1.143 HB3 LEU 49
2L0 H27 H27 H 0 1 N N N N N N 62.236 -133.801 33.537 0.276 -2.599 0.254 HG LEU 50
2L0 H4 H4 H 0 1 N N N N N N 63.931 -132.463 34.783 -1.490 -3.789 2.440 HD11 LEU 51
2L0 H5 H5 H 0 1 N N N N N N 64.942 -133.935 34.982 0.247 -3.422 2.566 HD12 LEU 52
2L0 H6 H6 H 0 1 N N N N N N 64.655 -133.256 33.344 -0.931 -2.099 2.393 HD13 LEU 53
2L0 H28 H28 H 0 1 N N N N N N 62.466 -136.281 33.459 -1.177 -5.273 0.499 HD21 LEU 54
2L0 H29 H29 H 0 1 N N N N N N 63.804 -135.474 32.574 -0.243 -4.724 -0.914 HD22 LEU 55
2L0 H30 H30 H 0 1 N N N N N N 64.091 -136.152 34.213 0.582 -5.031 0.633 HD23 LEU 56
2L0 H31 H31 H 0 1 N N N N N N 61.540 -137.370 36.970 0.521 -0.871 0.895 H LEU 57
2L0 H7 H7 H 0 1 N N N N N N 59.881 -136.439 39.291 1.289 0.389 -1.625 HA LEU 58
2L0 H32 H32 H 0 1 N N N N N N 60.416 -139.081 38.031 1.260 1.915 1.017 HB2 LEU 59
2L0 H33 H33 H 0 1 N N N N N N 60.503 -139.073 39.825 2.083 2.469 -0.461 HB3 LEU 60
2L0 H34 H34 H 0 1 N N N N N N 58.263 -138.005 39.941 -0.893 1.825 -0.273 HG LEU 61
2L0 H8 H8 H 0 1 N N N N N N 56.883 -137.772 37.884 0.563 4.507 -0.334 HD11 LEU 62
2L0 H9 H9 H 0 1 N N N N N N 58.355 -136.748 37.786 -1.202 4.283 -0.386 HD12 LEU 63
2L0 H10 H10 H 0 1 N N N N N N 58.278 -138.299 36.883 -0.289 3.820 1.070 HD13 LEU 64
2L0 H11 H11 H 0 1 N N N N N N 58.471 -140.488 39.897 0.795 3.170 -2.431 HD21 LEU 65
2L0 H12 H12 H 0 1 N N N N N N 56.953 -139.945 39.104 0.109 1.530 -2.522 HD22 LEU 66
2L0 H13 H13 H 0 1 N N N N N N 58.354 -140.463 38.105 -0.970 2.945 -2.484 HD23 LEU 67
2L0 H35 H35 H 0 1 N N N N N N 60.793 -137.361 41.429 3.799 1.308 -1.115 H12 05W 68
2L0 H36 H36 H 0 1 N N N N N N 63.749 -136.904 41.598 5.133 -0.585 0.681 H13 05W 69
2L0 H14 H14 H 0 1 N N N N N N 61.760 -134.929 41.779 4.732 -1.832 -1.474 H14 05W 70
2L0 H15 H15 H 0 1 N N N N N N 62.102 -135.327 43.497 5.686 -0.589 -2.319 H15 05W 71
2L0 H37 H37 H 0 1 N N N N N N 64.525 -134.915 43.087 7.607 -1.092 -0.771 H16 05W 72
2L0 H38 H38 H 0 1 N N N N N N 65.232 -133.762 41.000 7.512 -3.126 0.601 H17 05W 73
2L0 H39 H39 H 0 1 N N N N N N 64.591 -135.402 40.645 6.193 -2.028 1.074 H18 05W 74
2L0 H40 H40 H 0 1 N N N N N N 63.577 -133.953 40.329 5.849 -3.446 0.055 H19 05W 75
2L0 H16 H16 H 0 1 N N N N N N 63.007 -133.129 43.945 7.450 -2.140 -3.013 H20 05W 76
2L0 H17 H17 H 0 1 N N N N N N 64.322 -132.446 42.930 8.191 -3.253 -1.838 H21 05W 77
2L0 H18 H18 H 0 1 N N N N N N 62.665 -132.616 42.258 6.493 -3.473 -2.324 H22 05W 78
2L0 H41 H41 H 0 1 N N N N N N 63.206 -137.239 44.153 7.193 0.593 0.004 H23 05W 79
2L0 H43 H43 H 0 1 N N N N N N 63.680 -139.639 43.987 4.881 2.517 0.523 H24 05W 80
2L0 H44 H44 H 0 1 N N N N N N 65.221 -137.938 43.207 7.070 3.568 -0.121 H25 05W 81
2L0 H45 H45 H 0 1 N N N N N N 65.360 -139.431 42.219 6.594 3.930 1.555 H26 05W 82
2L0 H46 H46 H 0 1 N N N N N N 64.465 -138.011 41.579 7.843 2.705 1.230 H27 05W 83
2L0 H47 H47 H 0 1 N N N N N N 63.456 -140.909 41.902 4.994 0.555 2.089 H28 05W 84
2L0 H48 H48 H 0 1 N N N N N N 62.958 -139.441 40.995 6.671 1.007 2.479 H29 05W 85
2L0 H49 H49 H 0 1 N N N N N N 61.162 -140.797 41.565 5.111 1.969 4.011 H30 05W 86
2L0 H42 H42 H 0 1 N N N N N N 61.329 -138.627 44.419 5.474 2.049 -1.828 H31 05W 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2L0 C5 O6 SING N N 1
2L0 C5 C4 SING N N 2
2L0 C14 C12 SING N N 3
2L0 O6 C7 SING N N 4
2L0 C3 C4 DOUB Y N 5
2L0 C3 C2 SING Y N 6
2L0 C4 C31 SING Y N 7
2L0 C12 C13 SING N N 8
2L0 C12 C11 SING N N 9
2L0 C7 O8 DOUB N N 10
2L0 C7 N9 SING N N 11
2L0 C2 C1 DOUB Y N 12
2L0 N9 C10 SING N N 13
2L0 C31 C32 DOUB Y N 14
2L0 C10 C11 SING N N 15
2L0 C10 C15 SING N N 16
2L0 C1 C32 SING Y N 17
2L0 C15 N16 SING N N 18
2L0 C15 O30 DOUB N N 19
2L0 N16 C17 SING N N 20
2L0 C20 C19 SING N N 21
2L0 C17 C18 SING N N 22
2L0 C17 C22 SING N N 23
2L0 C18 C19 SING N N 24
2L0 C19 C21 SING N N 25
2L0 O23 C22 DOUB N N 26
2L0 C22 N24 SING N N 27
2L0 C29 C27 SING N N 28
2L0 N24 C25 SING N N 29
2L0 C35 O40 SING N N 30
2L0 C35 C34 SING N N 31
2L0 C25 C26 SING N N 32
2L0 C25 C33 SING N N 33
2L0 C27 C26 SING N N 34
2L0 C27 C28 SING N N 35
2L0 C45 C34 SING N N 36
2L0 C34 C33 SING N N 37
2L0 C33 O43 SING N N 38
2L0 C5 H1 SING N N 39
2L0 C5 H2 SING N N 40
2L0 C10 H3 SING N N 41
2L0 C13 H4 SING N N 42
2L0 C13 H5 SING N N 43
2L0 C13 H6 SING N N 44
2L0 C17 H7 SING N N 45
2L0 C20 H8 SING N N 46
2L0 C20 H9 SING N N 47
2L0 C20 H10 SING N N 48
2L0 C21 H11 SING N N 49
2L0 C21 H12 SING N N 50
2L0 C21 H13 SING N N 51
2L0 C26 H14 SING N N 52
2L0 C26 H15 SING N N 53
2L0 C28 H16 SING N N 54
2L0 C28 H17 SING N N 55
2L0 C28 H18 SING N N 56
2L0 C3 H19 SING N N 57
2L0 C2 H20 SING N N 58
2L0 C1 H21 SING N N 59
2L0 C32 H22 SING N N 60
2L0 C31 H23 SING N N 61
2L0 N9 H24 SING N N 62
2L0 C11 H25 SING N N 63
2L0 C11 H26 SING N N 64
2L0 C12 H27 SING N N 65
2L0 C14 H28 SING N N 66
2L0 C14 H29 SING N N 67
2L0 C14 H30 SING N N 68
2L0 N16 H31 SING N N 69
2L0 C18 H32 SING N N 70
2L0 C18 H33 SING N N 71
2L0 C19 H34 SING N N 72
2L0 N24 H35 SING N N 73
2L0 C25 H36 SING N N 74
2L0 C27 H37 SING N N 75
2L0 C29 H38 SING N N 76
2L0 C29 H39 SING N N 77
2L0 C29 H40 SING N N 78
2L0 C33 H41 SING N N 79
2L0 O43 H42 SING N N 80
2L0 C34 H43 SING N N 81
2L0 C45 H44 SING N N 82
2L0 C45 H45 SING N N 83
2L0 C45 H46 SING N N 84
2L0 C35 H47 SING N N 85
2L0 C35 H48 SING N N 86
2L0 O40 H49 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2L0 SMILES ACDLabs 12.01 'O=C(NC(CC(C)C)C(O)C(C)CO)C(NC(=O)C(NC(=O)OCc1ccccc1)CC(C)C)CC(C)C'
2L0 InChI InChI 1.03 'InChI=1S/C29H49N3O6/c1-18(2)13-23(26(34)21(7)16-33)30-27(35)24(14-19(3)4)31-28(36)25(15-20(5)6)32-29(37)38-17-22-11-9-8-10-12-22/h8-12,18-21,23-26,33-34H,13-17H2,1-7H3,(H,30,35)(H,31,36)(H,32,37)/t21-,23+,24+,25+,26+/m1/s1'
2L0 InChIKey InChI 1.03 BQCZUBTUMXOONX-KAPZOZIZSA-N
2L0 SMILES_CANONICAL CACTVS 3.370 'CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1)[C@@H](O)[C@H](C)CO'
2L0 SMILES CACTVS 3.370 'CC(C)C[CH](NC(=O)[CH](CC(C)C)NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1)[CH](O)[CH](C)CO'
2L0 SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'C[C@H](CO)[C@@H]([C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1)O'
2L0 SMILES 'OpenEye OEToolkits' 1.7.6 'CC(C)CC(C(C(C)CO)O)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)OCc1ccccc1'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2L0 'SYSTEMATIC NAME' ACDLabs 12.01 'N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-leucinamide'
2L0 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 '(phenylmethyl) N-[(2S)-1-[[(2S)-1-[[(2R,3S,4S)-2,6-dimethyl-1,3-bis(oxidanyl)heptan-4-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2L0 'Create component' 2013-11-25 RCSB
2L0 'Initial release' 2014-02-12 RCSB
2L0 'Modify synonyms' 2020-06-05 PDBE
2L0 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 2L0
_pdbx_chem_comp_synonyms.name 'PHQ-LEU-LEU-LEU-EPOXYKETONE, bound form'
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 2L0 THR None 'Covalent chemical modification' 'Amino-acid backbone' N-terminal C34 N ? ?
2 2L0 THR None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' C33 OG1 ? ?
#
_pdbe_chem_comp_synonyms.comp_id 2L0
_pdbe_chem_comp_synonyms.name 'PHQ-LEU-LEU-LEU-EPOXYKETONE, bound form'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2L0 C7 C 5.598 0.000 1
2L0 O8 O 4.299 0.750 2
2L0 O6 O 5.598 -1.500 3
2L0 C5 C 4.299 -2.250 4
2L0 C4 C 4.299 -3.750 5
2L0 C3 C 3.000 -4.500 6
2L0 C2 C 3.000 -6.000 7
2L0 C1 C 4.299 -6.750 8
2L0 C32 C 5.598 -6.000 9
2L0 C31 C 5.598 -4.500 10
2L0 N9 N 6.897 0.750 11
2L0 C10 C 6.897 2.250 12
2L0 C15 C 8.196 3.000 13
2L0 O30 O 8.196 4.500 14
2L0 C11 C 5.598 3.000 15
2L0 C12 C 5.598 4.500 16
2L0 C13 C 6.897 5.250 17
2L0 C14 C 4.299 5.250 18
2L0 N16 N 9.495 2.250 19
2L0 C17 C 10.794 3.000 20
2L0 C22 C 12.093 2.250 21
2L0 O23 O 13.392 3.000 22
2L0 C18 C 10.794 4.500 23
2L0 C19 C 12.093 5.250 24
2L0 C20 C 12.093 6.750 25
2L0 C21 C 13.392 4.500 26
2L0 N24 N 12.093 0.750 27
2L0 C25 C 13.392 0.000 28
2L0 C26 C 14.691 0.750 29
2L0 C27 C 15.990 0.000 30
2L0 C29 C 17.290 0.750 31
2L0 C28 C 15.990 -1.500 32
2L0 C33 C 13.392 -1.500 33
2L0 C34 C 12.093 -2.250 34
2L0 C45 C 10.794 -1.500 35
2L0 C35 C 12.093 -3.750 36
2L0 O40 O 10.794 -4.500 37
2L0 O43 O 14.691 -2.250 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2L0 C5 O6 SINGLE NONE 1
2L0 C5 C4 SINGLE NONE 2
2L0 C14 C12 SINGLE NONE 3
2L0 O6 C7 SINGLE NONE 4
2L0 C3 C4 DOUBLE NONE 5
2L0 C3 C2 SINGLE NONE 6
2L0 C4 C31 SINGLE NONE 7
2L0 C12 C13 SINGLE NONE 8
2L0 C12 C11 SINGLE NONE 9
2L0 C7 O8 DOUBLE NONE 10
2L0 C7 N9 SINGLE NONE 11
2L0 C2 C1 DOUBLE NONE 12
2L0 N9 C10 SINGLE NONE 13
2L0 C31 C32 DOUBLE NONE 14
2L0 C10 C11 SINGLE BEGINWEDGE 15
2L0 C10 C15 SINGLE NONE 16
2L0 C1 C32 SINGLE NONE 17
2L0 C15 N16 SINGLE NONE 18
2L0 C15 O30 DOUBLE NONE 19
2L0 N16 C17 SINGLE NONE 20
2L0 C20 C19 SINGLE NONE 21
2L0 C17 C18 SINGLE BEGINWEDGE 22
2L0 C17 C22 SINGLE NONE 23
2L0 C18 C19 SINGLE NONE 24
2L0 C19 C21 SINGLE NONE 25
2L0 O23 C22 DOUBLE NONE 26
2L0 C22 N24 SINGLE NONE 27
2L0 C29 C27 SINGLE NONE 28
2L0 N24 C25 SINGLE NONE 29
2L0 C35 O40 SINGLE NONE 30
2L0 C35 C34 SINGLE NONE 31
2L0 C25 C26 SINGLE BEGINWEDGE 32
2L0 C25 C33 SINGLE NONE 33
2L0 C27 C26 SINGLE NONE 34
2L0 C27 C28 SINGLE NONE 35
2L0 C34 C45 SINGLE BEGINWEDGE 36
2L0 C34 C33 SINGLE NONE 37
2L0 C33 O43 SINGLE BEGINWEDGE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2L0 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
2L0 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
2L0 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
2L0 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2L0 C4 S1 1
2L0 C3 S1 1
2L0 C2 S1 1
2L0 C1 S1 1
2L0 C32 S1 1
2L0 C31 S1 1
2L0 N16 F1 1
2L0 C15 F1 1
2L0 O30 F1 1
2L0 C10 F1 1
2L0 N24 F1 2
2L0 C22 F1 2
2L0 O23 F1 2
2L0 C17 F1 2
2L0 O30 F2 1
2L0 C15 F2 1
2L0 C10 F2 1
2L0 N9 F2 1
2L0 O23 F2 2
2L0 C22 F2 2
2L0 C17 F2 2
2L0 N16 F2 2
2L0 C4 F3 1
2L0 C3 F3 1
2L0 C2 F3 1
2L0 C1 F3 1
2L0 C32 F3 1
2L0 C31 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2L0
_pdbe_chem_comp_rdkit_properties.exactmw 535.362
_pdbe_chem_comp_rdkit_properties.amw 535.726
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 25
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 87
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.690
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 296.852
_pdbe_chem_comp_rdkit_properties.tpsa 136.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.324
_pdbe_chem_comp_rdkit_properties.CrippenMR 147.768
_pdbe_chem_comp_rdkit_properties.chi0v 18.291
_pdbe_chem_comp_rdkit_properties.chi1v 9.021
_pdbe_chem_comp_rdkit_properties.chi2v 3.050
_pdbe_chem_comp_rdkit_properties.chi3v 3.050
_pdbe_chem_comp_rdkit_properties.chi4v 1.733
_pdbe_chem_comp_rdkit_properties.chi0n 67.291
_pdbe_chem_comp_rdkit_properties.chi1n 33.179
_pdbe_chem_comp_rdkit_properties.chi2n 3.050
_pdbe_chem_comp_rdkit_properties.chi3n 3.050
_pdbe_chem_comp_rdkit_properties.chi4n 1.733
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.650
_pdbe_chem_comp_rdkit_properties.kappa1 5.862
_pdbe_chem_comp_rdkit_properties.kappa2 17.040
_pdbe_chem_comp_rdkit_properties.kappa3 12.735
_pdbe_chem_comp_rdkit_properties.Phi 2.629
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2L0 UniChem ZINC ZINC000098208194
2L0 UniChem PubChem 117071989
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2L0 C7 2.886 -0.330 -0.878 ETKDGv3 1
2L0 O8 2.163 0.238 -0.015 ETKDGv3 2
2L0 O6 3.175 0.316 -2.083 ETKDGv3 3
2L0 C5 2.640 1.594 -2.409 ETKDGv3 4
2L0 C4 3.056 1.972 -3.799 ETKDGv3 5
2L0 C3 4.290 2.453 -4.037 ETKDGv3 6
2L0 C2 4.702 2.794 -5.414 ETKDGv3 7
2L0 C1 3.854 2.613 -6.433 ETKDGv3 8
2L0 C32 2.503 2.068 -6.183 ETKDGv3 9
2L0 C31 2.125 1.761 -4.936 ETKDGv3 10
2L0 N9 3.412 -1.645 -0.646 ETKDGv3 11
2L0 C10 3.002 -2.535 0.448 ETKDGv3 12
2L0 C15 1.518 -2.815 0.351 ETKDGv3 13
2L0 O30 1.133 -3.770 -0.378 ETKDGv3 14
2L0 C11 3.436 -2.002 1.840 ETKDGv3 15
2L0 C12 4.944 -2.130 2.172 ETKDGv3 16
2L0 C13 5.411 -3.589 2.275 ETKDGv3 17
2L0 C14 5.840 -1.333 1.214 ETKDGv3 18
2L0 N16 0.547 -1.973 0.995 ETKDGv3 19
2L0 C17 -0.875 -2.009 0.633 ETKDGv3 20
2L0 C22 -1.555 -0.697 0.946 ETKDGv3 21
2L0 O23 -1.311 -0.104 2.033 ETKDGv3 22
2L0 C18 -1.607 -3.217 1.265 ETKDGv3 23
2L0 C19 -1.850 -3.158 2.797 ETKDGv3 24
2L0 C20 -0.543 -3.212 3.603 ETKDGv3 25
2L0 C21 -2.760 -4.321 3.216 ETKDGv3 26
2L0 N24 -2.504 -0.146 0.020 ETKDGv3 27
2L0 C25 -3.179 1.140 0.231 ETKDGv3 28
2L0 C26 -2.949 2.043 -1.005 ETKDGv3 29
2L0 C27 -1.461 2.197 -1.411 ETKDGv3 30
2L0 C29 -1.358 2.991 -2.720 ETKDGv3 31
2L0 C28 -0.637 2.891 -0.315 ETKDGv3 32
2L0 C33 -4.691 0.864 0.507 ETKDGv3 33
2L0 C34 -5.581 2.083 0.936 ETKDGv3 34
2L0 C45 -6.257 2.767 -0.265 ETKDGv3 35
2L0 C35 -4.887 3.126 1.837 ETKDGv3 36
2L0 O40 -4.416 2.524 3.010 ETKDGv3 37
2L0 O43 -4.823 -0.165 1.460 ETKDGv3 38
2L0 H1 1.532 1.558 -2.344 ETKDGv3 39
2L0 H2 3.005 2.352 -1.681 ETKDGv3 40
2L0 H19 4.993 2.595 -3.225 ETKDGv3 41
2L0 H20 5.693 3.190 -5.597 ETKDGv3 42
2L0 H21 4.155 2.861 -7.443 ETKDGv3 43
2L0 H22 1.822 1.916 -7.010 ETKDGv3 44
2L0 H23 1.135 1.358 -4.761 ETKDGv3 45
2L0 H24 4.046 -2.038 -1.377 ETKDGv3 46
2L0 H3 3.503 -3.514 0.295 ETKDGv3 47
2L0 H25 3.150 -0.936 1.951 ETKDGv3 48
2L0 H26 2.872 -2.557 2.623 ETKDGv3 49
2L0 H27 5.078 -1.681 3.182 ETKDGv3 50
2L0 H4 5.464 -4.070 1.276 ETKDGv3 51
2L0 H5 4.722 -4.171 2.923 ETKDGv3 52
2L0 H6 6.424 -3.627 2.728 ETKDGv3 53
2L0 H28 5.900 -1.824 0.221 ETKDGv3 54
2L0 H29 5.453 -0.299 1.091 ETKDGv3 55
2L0 H30 6.869 -1.270 1.628 ETKDGv3 56
2L0 H31 0.882 -1.233 1.649 ETKDGv3 57
2L0 H7 -0.931 -2.138 -0.471 ETKDGv3 58
2L0 H32 -1.058 -4.150 1.017 ETKDGv3 59
2L0 H33 -2.595 -3.295 0.760 ETKDGv3 60
2L0 H34 -2.386 -2.220 3.054 ETKDGv3 61
2L0 H8 -0.757 -3.374 4.681 ETKDGv3 62
2L0 H9 -0.000 -2.250 3.530 ETKDGv3 63
2L0 H10 0.111 -4.036 3.243 ETKDGv3 64
2L0 H11 -2.984 -4.264 4.303 ETKDGv3 65
2L0 H12 -2.275 -5.297 2.999 ETKDGv3 66
2L0 H13 -3.726 -4.271 2.669 ETKDGv3 67
2L0 H35 -2.763 -0.705 -0.825 ETKDGv3 68
2L0 H36 -2.748 1.648 1.116 ETKDGv3 69
2L0 H14 -3.514 1.619 -1.865 ETKDGv3 70
2L0 H15 -3.347 3.057 -0.806 ETKDGv3 71
2L0 H37 -1.020 1.194 -1.599 ETKDGv3 72
2L0 H38 -1.907 2.466 -3.531 ETKDGv3 73
2L0 H39 -1.788 4.008 -2.596 ETKDGv3 74
2L0 H40 -0.298 3.088 -3.035 ETKDGv3 75
2L0 H16 -1.100 3.859 -0.029 ETKDGv3 76
2L0 H17 0.397 3.084 -0.671 ETKDGv3 77
2L0 H18 -0.559 2.245 0.583 ETKDGv3 78
2L0 H41 -5.115 0.448 -0.433 ETKDGv3 79
2L0 H43 -6.423 1.669 1.536 ETKDGv3 80
2L0 H44 -5.528 3.289 -0.913 ETKDGv3 81
2L0 H45 -6.995 3.517 0.092 ETKDGv3 82
2L0 H46 -6.808 2.021 -0.876 ETKDGv3 83
2L0 H47 -5.623 3.915 2.111 ETKDGv3 84
2L0 H48 -4.051 3.623 1.300 ETKDGv3 85
2L0 H49 -3.957 3.240 3.523 ETKDGv3 86
2L0 H42 -4.345 0.119 2.281 ETKDGv3 87
#