data_2KB
#
_chem_comp.id 2KB
_chem_comp.name
4-{[(1R,2S,3R,5Z,7E,14beta,17alpha)-1,3,25-trihydroxy-9,10-secocholesta-5,7,10-trien-2-yl]oxy}butanenitrile
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H49 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-04-08
_chem_comp.pdbx_modified_date 2015-04-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 499.725
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2KB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4PA2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2KB C4 C1 C 0 1 N N N N N N -12.045 0.720 -33.627 -3.226 3.410 -0.650 C4 2KB 1
2KB C5 C2 C 0 1 N N R N N N -11.629 1.243 -32.232 -2.903 2.115 0.057 C5 2KB 2
2KB C6 C3 C 0 1 N N S N N N -12.886 1.666 -31.444 -1.888 2.438 1.190 C6 2KB 3
2KB C7 C4 C 0 1 N N N N N N -12.467 1.834 -29.970 -1.836 1.102 1.935 C7 2KB 4
2KB C8 C5 C 0 1 N N N N N N -11.331 0.779 -29.886 -3.330 0.675 1.978 C8 2KB 5
2KB C10 C6 C 0 1 N N N N N N -13.822 3.948 -31.710 0.534 2.249 0.673 C10 2KB 6
2KB C13 C7 C 0 1 N N N N N N -15.177 7.242 -33.109 4.167 2.537 -0.568 C13 2KB 7
2KB C15 C8 C 0 1 N N S N N N -14.872 9.055 -31.404 5.170 0.306 -0.029 C15 2KB 8
2KB C17 C9 C 0 1 N N N N N N -13.597 6.991 -31.194 3.036 0.926 1.052 C17 2KB 9
2KB C20 C10 C 0 1 N N N N N N -10.643 2.409 -32.366 -2.258 1.144 -0.934 C20 2KB 10
2KB C21 C11 C 0 1 N N R N N N -9.618 -0.346 -31.481 -4.690 0.371 -0.132 C21 2KB 11
2KB C22 C12 C 0 1 N N N N N N -9.463 -1.712 -30.781 -5.398 1.101 -1.276 C22 2KB 12
2KB C24 C13 C 0 1 N N N N N N -7.105 -0.052 -31.677 -6.290 -1.546 -0.227 C24 2KB 13
2KB C26 C14 C 0 1 N N N N N N -4.617 0.496 -31.766 -7.889 -3.463 -0.321 C26 2KB 14
2KB C28 C15 C 0 1 N N N N N N -4.503 0.282 -33.247 -6.760 -4.382 -0.791 C28 2KB 15
2KB N35 N1 N 0 1 N N N N N N -14.908 14.109 -33.684 9.892 -5.067 -0.405 N35 2KB 16
2KB C34 C16 C 0 1 N N N N N N -15.424 13.567 -32.797 9.317 -4.223 0.092 C34 2KB 17
2KB C33 C17 C 0 1 N N N N N N -15.966 12.940 -31.899 8.573 -3.128 0.735 C33 2KB 18
2KB C32 C18 C 0 1 N N N N N N -15.282 11.611 -31.592 7.615 -2.498 -0.278 C32 2KB 19
2KB C31 C19 C 0 1 N N N N N N -14.111 11.079 -32.506 6.841 -1.360 0.391 C31 2KB 20
2KB O19 O1 O 0 1 N N N N N N -13.991 9.658 -32.370 5.946 -0.773 -0.555 O19 2KB 21
2KB C14 C20 C 0 1 N N R N N N -15.885 8.325 -32.271 4.861 1.301 -1.149 C14 2KB 22
2KB O30 O2 O 0 1 N N N N N N -16.894 7.834 -31.427 6.079 1.695 -1.784 O30 2KB 23
2KB C16 C21 C 0 1 N N R N N N -14.157 8.129 -30.443 3.864 -0.242 0.553 C16 2KB 24
2KB O18 O3 O 0 1 N N N N N N -13.074 8.750 -29.776 3.142 -0.945 -0.461 O18 2KB 25
2KB C29 C22 C 0 1 N N N N N N -12.321 6.636 -31.152 2.453 0.907 2.250 C29 2KB 26
2KB C12 C23 C 0 1 N N N N N N -14.413 6.315 -32.202 2.908 2.086 0.146 C12 2KB 27
2KB C11 C24 C 0 1 N N N N N N -14.518 4.957 -32.421 1.728 2.714 -0.036 C11 2KB 28
2KB C3 C25 C 0 1 N N N N N N -13.658 2.703 -32.150 -0.632 2.869 0.492 C3 2KB 29
2KB C2 C26 C 0 1 N N N N N N -14.177 2.189 -33.478 -0.784 4.066 -0.436 C2 2KB 30
2KB C9 C27 C 0 1 N N R N N N -11.069 0.215 -31.264 -4.023 1.393 0.790 C9 2KB 31
2KB C1 C28 C 0 1 N N N N N N -12.944 1.753 -34.316 -1.957 3.862 -1.392 C1 2KB 32
2KB C23 C29 C 0 1 N N N N N N -8.417 0.481 -31.056 -5.713 -0.443 0.663 C23 2KB 33
2KB C25 C30 C 0 1 N N N N N N -6.016 0.946 -31.386 -7.312 -2.360 0.568 C25 2KB 34
2KB O36 O4 O 0 1 N N N N N N -3.729 1.589 -31.396 -8.528 -2.875 -1.456 O36 2KB 35
2KB C27 C31 C 0 1 N N N N N N -4.146 -0.740 -31.051 -8.912 -4.277 0.474 C27 2KB 36
2KB H1 H1 H 0 1 N N N N N N -12.594 -0.226 -33.514 -4.035 3.250 -1.363 H1 2KB 37
2KB H2 H2 H 0 1 N N N N N N -11.146 0.552 -34.238 -3.520 4.166 0.078 H2 2KB 38
2KB H3 H3 H 0 1 N N N N N N -13.529 0.773 -31.449 -2.267 3.228 1.839 H3 2KB 39
2KB H4 H4 H 0 1 N N N N N N -12.096 2.849 -29.765 -1.242 0.375 1.383 H4 2KB 40
2KB H5 H5 H 0 1 N N N N N N -13.293 1.599 -29.282 -1.444 1.238 2.943 H5 2KB 41
2KB H6 H6 H 0 1 N N N N N N -11.633 -0.033 -29.208 -3.414 -0.405 1.862 H6 2KB 42
2KB H7 H7 H 0 1 N N N N N N -10.416 1.254 -29.504 -3.782 0.987 2.920 H7 2KB 43
2KB H8 H8 H 0 1 N N N N N N -13.398 4.206 -30.751 0.598 1.403 1.341 H8 2KB 44
2KB H9 H9 H 0 1 N N N N N N -15.927 6.667 -33.671 4.832 3.034 0.139 H9 2KB 45
2KB H10 H10 H 0 1 N N N N N N -14.480 7.722 -33.812 3.906 3.224 -1.373 H10 2KB 46
2KB H11 H11 H 0 1 N N N N N N -15.392 9.836 -30.829 5.735 0.809 0.756 H11 2KB 47
2KB H12 H12 H 0 1 N N N N N N -10.359 2.767 -31.365 -1.289 1.534 -1.246 H12 2KB 48
2KB H13 H13 H 0 1 N N N N N N -9.745 2.070 -32.902 -2.123 0.174 -0.457 H13 2KB 49
2KB H14 H14 H 0 1 N N N N N N -11.117 3.228 -32.927 -2.902 1.034 -1.806 H14 2KB 50
2KB H15 H15 H 0 1 N N N N N N -9.515 -0.531 -32.560 -3.933 -0.298 -0.542 H15 2KB 51
2KB H16 H16 H 0 1 N N N N N N -8.444 -2.093 -30.941 -6.108 1.819 -0.864 H16 2KB 52
2KB H17 H17 H 0 1 N N N N N N -9.645 -1.594 -29.703 -4.660 1.627 -1.882 H17 2KB 53
2KB H18 H18 H 0 1 N N N N N N -10.190 -2.423 -31.200 -5.929 0.379 -1.895 H18 2KB 54
2KB H19 H19 H 0 1 N N N N N N -7.226 -0.167 -32.764 -6.777 -1.097 -1.093 H19 2KB 55
2KB H20 H20 H 0 1 N N N N N N -6.849 -1.025 -31.232 -5.485 -2.201 -0.561 H20 2KB 56
2KB H21 H21 H 0 1 N N N N N N -5.166 -0.541 -33.551 -6.031 -3.802 -1.357 H21 2KB 57
2KB H22 H22 H 0 1 N N N N N N -4.795 1.202 -33.774 -6.273 -4.831 0.075 H22 2KB 58
2KB H23 H23 H 0 1 N N N N N N -3.463 0.028 -33.502 -7.171 -5.168 -1.425 H23 2KB 59
2KB H24 H24 H 0 1 N N N N N N -15.956 13.556 -30.988 8.004 -3.521 1.577 H24 2KB 60
2KB H25 H25 H 0 1 N N N N N N -17.006 12.737 -32.193 9.273 -2.372 1.091 H25 2KB 61
2KB H26 H26 H 0 1 N N N N N N -16.068 10.842 -31.608 8.183 -2.105 -1.120 H26 2KB 62
2KB H27 H27 H 0 1 N N N N N N -14.873 11.696 -30.574 6.914 -3.254 -0.634 H27 2KB 63
2KB H28 H28 H 0 1 N N N N N N -13.167 11.555 -32.203 6.272 -1.754 1.233 H28 2KB 64
2KB H29 H29 H 0 1 N N N N N N -14.326 11.328 -33.556 7.541 -0.605 0.746 H29 2KB 65
2KB H30 H30 H 0 1 N N N N N N -16.318 9.055 -32.970 4.207 0.829 -1.882 H30 2KB 66
2KB H31 H31 H 0 1 N N N N N N -17.283 8.554 -30.945 5.959 2.323 -2.509 H31 2KB 67
2KB H32 H32 H 0 1 N N N N N N -14.885 7.754 -29.709 4.085 -0.916 1.381 H32 2KB 68
2KB H33 H33 H 0 1 N N N N N N -12.664 8.126 -29.189 2.303 -1.319 -0.159 H33 2KB 69
2KB H34 H34 H 0 1 N N N N N N -11.625 7.193 -30.541 2.564 0.045 2.892 H34 2KB 70
2KB H35 H35 H 0 1 N N N N N N -11.977 5.790 -31.728 1.869 1.754 2.580 H35 2KB 71
2KB H36 H36 H 0 1 N N N N N N -15.190 4.635 -33.203 1.664 3.560 -0.704 H36 2KB 72
2KB H37 H37 H 0 1 N N N N N N -14.726 2.985 -34.002 -0.957 4.962 0.159 H37 2KB 73
2KB H38 H38 H 0 1 N N N N N N -14.844 1.330 -33.315 0.132 4.190 -1.014 H38 2KB 74
2KB H39 H39 H 0 1 N N N N N N -11.728 -0.661 -31.354 -4.759 2.109 1.156 H39 2KB 75
2KB H40 H40 H 0 1 N N N N N N -12.340 2.647 -34.530 -1.688 3.106 -2.129 H40 2KB 76
2KB H41 H41 H 0 1 N N N N N N -13.305 1.320 -35.260 -2.163 4.801 -1.907 H41 2KB 77
2KB H42 H42 H 0 1 N N N N N N -8.331 0.448 -29.960 -5.226 -0.892 1.528 H42 2KB 78
2KB H43 H43 H 0 1 N N N N N N -8.568 1.521 -31.381 -6.518 0.212 0.997 H43 2KB 79
2KB H44 H44 H 0 1 N N N N N N -6.025 1.157 -30.306 -6.826 -2.809 1.434 H44 2KB 80
2KB H45 H45 H 0 1 N N N N N N -6.241 1.868 -31.942 -8.117 -1.705 0.903 H45 2KB 81
2KB H46 H46 H 0 1 N N N N N N -3.786 1.741 -30.460 -9.255 -2.279 -1.233 H46 2KB 82
2KB H47 H47 H 0 1 N N N N N N -4.227 -0.589 -29.964 -9.323 -5.063 -0.160 H47 2KB 83
2KB H48 H48 H 0 1 N N N N N N -4.769 -1.596 -31.350 -8.425 -4.726 1.340 H48 2KB 84
2KB H49 H49 H 0 1 N N N N N N -3.097 -0.939 -31.316 -9.717 -3.622 0.808 H49 2KB 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2KB C1 C4 SING N N 1
2KB C1 C2 SING N N 2
2KB N35 C34 TRIP N N 3
2KB C4 C5 SING N N 4
2KB C2 C3 SING N N 5
2KB C28 C26 SING N N 6
2KB C13 C14 SING N N 7
2KB C13 C12 SING N N 8
2KB C34 C33 SING N N 9
2KB C31 O19 SING N N 10
2KB C31 C32 SING N N 11
2KB C11 C12 DOUB N Z 12
2KB C11 C10 SING N N 13
2KB O19 C15 SING N N 14
2KB C20 C5 SING N N 15
2KB C14 O30 SING N N 16
2KB C14 C15 SING N N 17
2KB C5 C6 SING N N 18
2KB C5 C9 SING N N 19
2KB C12 C17 SING N N 20
2KB C3 C10 DOUB N E 21
2KB C3 C6 SING N N 22
2KB C33 C32 SING N N 23
2KB C26 O36 SING N N 24
2KB C26 C25 SING N N 25
2KB C26 C27 SING N N 26
2KB C24 C25 SING N N 27
2KB C24 C23 SING N N 28
2KB C21 C9 SING N N 29
2KB C21 C23 SING N N 30
2KB C21 C22 SING N N 31
2KB C6 C7 SING N N 32
2KB C15 C16 SING N N 33
2KB C9 C8 SING N N 34
2KB C17 C29 DOUB N N 35
2KB C17 C16 SING N N 36
2KB C16 O18 SING N N 37
2KB C7 C8 SING N N 38
2KB C4 H1 SING N N 39
2KB C4 H2 SING N N 40
2KB C6 H3 SING N N 41
2KB C7 H4 SING N N 42
2KB C7 H5 SING N N 43
2KB C8 H6 SING N N 44
2KB C8 H7 SING N N 45
2KB C10 H8 SING N N 46
2KB C13 H9 SING N N 47
2KB C13 H10 SING N N 48
2KB C15 H11 SING N N 49
2KB C20 H12 SING N N 50
2KB C20 H13 SING N N 51
2KB C20 H14 SING N N 52
2KB C21 H15 SING N N 53
2KB C22 H16 SING N N 54
2KB C22 H17 SING N N 55
2KB C22 H18 SING N N 56
2KB C24 H19 SING N N 57
2KB C24 H20 SING N N 58
2KB C28 H21 SING N N 59
2KB C28 H22 SING N N 60
2KB C28 H23 SING N N 61
2KB C33 H24 SING N N 62
2KB C33 H25 SING N N 63
2KB C32 H26 SING N N 64
2KB C32 H27 SING N N 65
2KB C31 H28 SING N N 66
2KB C31 H29 SING N N 67
2KB C14 H30 SING N N 68
2KB O30 H31 SING N N 69
2KB C16 H32 SING N N 70
2KB O18 H33 SING N N 71
2KB C29 H34 SING N N 72
2KB C29 H35 SING N N 73
2KB C11 H36 SING N N 74
2KB C2 H37 SING N N 75
2KB C2 H38 SING N N 76
2KB C9 H39 SING N N 77
2KB C1 H40 SING N N 78
2KB C1 H41 SING N N 79
2KB C23 H42 SING N N 80
2KB C23 H43 SING N N 81
2KB C25 H44 SING N N 82
2KB C25 H45 SING N N 83
2KB O36 H46 SING N N 84
2KB C27 H47 SING N N 85
2KB C27 H48 SING N N 86
2KB C27 H49 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2KB SMILES ACDLabs 12.01 "N#CCCCOC3C(O)C(\C(=C/C=C1\CCCC2(C)C(C(C)CCCC(O)(C)C)CCC12)CC3O)=C"
2KB InChI InChI 1.03 InChI=1S/C31H49NO4/c1-21(10-8-16-30(3,4)35)25-14-15-26-23(11-9-17-31(25,26)5)12-13-24-20-27(33)29(28(34)22(24)2)36-19-7-6-18-32/h12-13,21,25-29,33-35H,2,6-11,14-17,19-20H2,1,3-5H3/b23-12+,24-13-/t21-,25-,26+,27-,28-,29+,31-/m1/s1
2KB InChIKey InChI 1.03 KQWXEWOYVIUCOD-IBOBMRDDSA-N
2KB SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@H]2\C(CCC[C@]12C)=C\C=C3\C[C@@H](O)[C@H](OCCCC#N)[C@H](O)C3=C"
2KB SMILES CACTVS 3.385 "C[CH](CCCC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)[CH](OCCCC#N)[CH](O)C3=C"
2KB SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H]([C@@H]([C@@H](C3=C)O)OCCCC#N)O)C"
2KB SMILES "OpenEye OEToolkits" 1.9.2 "CC(CCCC(C)(C)O)C1CCC2C1(CCCC2=CC=C3CC(C(C(C3=C)O)OCCCC#N)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2KB "SYSTEMATIC NAME" ACDLabs 12.01 4-{[(1R,2S,3R,5Z,7E,14beta,17alpha)-1,3,25-trihydroxy-9,10-secocholesta-5,7,10-trien-2-yl]oxy}butanenitrile
2KB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 4-[(1S,2R,4Z,6R)-4-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-6-methyl-6-oxidanyl-heptan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-3-methylidene-2,6-bis(oxidanyl)cyclohexyl]oxybutanenitrile
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2KB 'Create component' 2014-04-08 RCSB
2KB 'Modify descriptor' 2014-09-05 RCSB
2KB 'Initial release' 2015-04-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2KB C4 C 7.702 5.515 1
2KB C5 C 9.002 4.765 2
2KB C6 C 9.002 3.265 3
2KB C7 C 10.421 2.808 4
2KB C8 C 11.296 4.015 5
2KB C10 C 7.702 1.015 6
2KB C13 C 5.104 -1.985 7
2KB C15 C 6.404 -4.235 8
2KB C17 C 7.702 -1.985 9
2KB C20 C 9.002 6.265 10
2KB C21 C 10.887 6.648 11
2KB C22 C 9.885 7.764 12
2KB C24 C 12.821 8.383 13
2KB C26 C 14.754 10.118 14
2KB C28 C 15.220 11.543 15
2KB N35 N 3.805 -11.735 16
2KB C34 C 3.805 -10.235 17
2KB C33 C 3.805 -8.735 18
2KB C32 C 5.104 -7.985 19
2KB C31 C 5.104 -6.485 20
2KB O19 O 6.404 -5.735 21
2KB C14 C 5.104 -3.485 22
2KB O30 O 3.805 -4.235 23
2KB C16 C 7.702 -3.485 24
2KB O18 O 9.002 -4.235 25
2KB C29 C 9.002 -1.235 26
2KB C12 C 6.404 -1.235 27
2KB C11 C 6.404 0.265 28
2KB C3 C 7.702 2.515 29
2KB C2 C 6.404 3.265 30
2KB C9 C 10.421 5.222 31
2KB C1 C 6.404 4.765 32
2KB C23 C 12.355 6.957 33
2KB C25 C 14.288 8.692 34
2KB O36 O 16.180 9.652 35
2KB C27 C 13.329 10.584 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2KB C1 C4 SINGLE NONE 1
2KB C1 C2 SINGLE NONE 2
2KB N35 C34 TRIPLE NONE 3
2KB C4 C5 SINGLE NONE 4
2KB C2 C3 SINGLE ENDUPRIGHT 5
2KB C28 C26 SINGLE NONE 6
2KB C13 C14 SINGLE NONE 7
2KB C13 C12 SINGLE ENDUPRIGHT 8
2KB C34 C33 SINGLE NONE 9
2KB C31 O19 SINGLE NONE 10
2KB C31 C32 SINGLE NONE 11
2KB C11 C12 DOUBLE NONE 12
2KB C11 C10 SINGLE ENDUPRIGHT 13
2KB C15 O19 SINGLE BEGINWEDGE 14
2KB C5 C20 SINGLE BEGINWEDGE 15
2KB C14 O30 SINGLE BEGINDASH 16
2KB C14 C15 SINGLE NONE 17
2KB C5 C6 SINGLE NONE 18
2KB C5 C9 SINGLE NONE 19
2KB C12 C17 SINGLE ENDUPRIGHT 20
2KB C3 C10 DOUBLE NONE 21
2KB C3 C6 SINGLE ENDUPRIGHT 22
2KB C33 C32 SINGLE NONE 23
2KB C26 O36 SINGLE NONE 24
2KB C26 C25 SINGLE NONE 25
2KB C26 C27 SINGLE NONE 26
2KB C24 C25 SINGLE NONE 27
2KB C24 C23 SINGLE NONE 28
2KB C21 C9 SINGLE NONE 29
2KB C21 C23 SINGLE NONE 30
2KB C21 C22 SINGLE BEGINDASH 31
2KB C6 C7 SINGLE NONE 32
2KB C15 C16 SINGLE NONE 33
2KB C9 C8 SINGLE BEGINWEDGE 34
2KB C17 C29 DOUBLE NONE 35
2KB C17 C16 SINGLE NONE 36
2KB C16 O18 SINGLE BEGINWEDGE 37
2KB C7 C8 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2KB MurckoScaffold S1 scaffold 'C=C1CCCC/C1=C/C=C1\CCCC2CCC[C@@H]12' InChI=1S/C18H26/c1-14-6-2-3-7-15(14)12-13-17-9-4-8-16-10-5-11-18(16)17/h12-13,16,18H,1-11H2/b15-12-,17-13+/t16-,18-/m1/s1 GBDZMYYBUXFGPL-VDTWJZRYSA-N
2KB cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
2KB cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2KB C4 S1 1
2KB C5 S1 1
2KB C6 S1 1
2KB C7 S1 1
2KB C8 S1 1
2KB C10 S1 1
2KB C13 S1 1
2KB C15 S1 1
2KB C17 S1 1
2KB C14 S1 1
2KB C16 S1 1
2KB C29 S1 1
2KB C12 S1 1
2KB C11 S1 1
2KB C3 S1 1
2KB C2 S1 1
2KB C9 S1 1
2KB C1 S1 1
2KB C4 F1 1
2KB C1 F1 1
2KB C2 F1 1
2KB C3 F1 1
2KB C6 F1 1
2KB C5 F1 1
2KB C13 F1 2
2KB C14 F1 2
2KB C15 F1 2
2KB C16 F1 2
2KB C17 F1 2
2KB C12 F1 2
2KB C5 F2 1
2KB C6 F2 1
2KB C7 F2 1
2KB C8 F2 1
2KB C9 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2KB
_pdbe_chem_comp_rdkit_properties.exactmw 499.366
_pdbe_chem_comp_rdkit_properties.amw 499.736
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 85
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.774
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 287.594
_pdbe_chem_comp_rdkit_properties.tpsa 93.710
_pdbe_chem_comp_rdkit_properties.CrippenClogP 6.004
_pdbe_chem_comp_rdkit_properties.CrippenMR 144.008
_pdbe_chem_comp_rdkit_properties.chi0v 17.580
_pdbe_chem_comp_rdkit_properties.chi1v 9.244
_pdbe_chem_comp_rdkit_properties.chi2v 4.189
_pdbe_chem_comp_rdkit_properties.chi3v 4.189
_pdbe_chem_comp_rdkit_properties.chi4v 2.655
_pdbe_chem_comp_rdkit_properties.chi0n 66.580
_pdbe_chem_comp_rdkit_properties.chi1n 33.469
_pdbe_chem_comp_rdkit_properties.chi2n 4.189
_pdbe_chem_comp_rdkit_properties.chi3n 4.189
_pdbe_chem_comp_rdkit_properties.chi4n 2.655
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.450
_pdbe_chem_comp_rdkit_properties.kappa1 5.314
_pdbe_chem_comp_rdkit_properties.kappa2 12.396
_pdbe_chem_comp_rdkit_properties.kappa3 6.895
_pdbe_chem_comp_rdkit_properties.Phi 1.830
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2KB UniChem ZINC ZINC000230838236
2KB UniChem PubChem 91667408
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2KB C4 -2.983 -2.239 -0.103 ETKDGv3 1
2KB C5 -2.166 -1.152 0.671 ETKDGv3 2
2KB C6 -1.070 -0.591 -0.254 ETKDGv3 3
2KB C7 -0.598 0.689 0.429 ETKDGv3 4
2KB C8 -1.849 1.232 1.131 ETKDGv3 5
2KB C10 1.258 -1.466 -0.571 ETKDGv3 6
2KB C13 4.526 -3.432 -1.115 ETKDGv3 7
2KB C15 6.184 -1.512 -1.014 ETKDGv3 8
2KB C17 4.105 -1.401 0.433 ETKDGv3 9
2KB C20 -1.556 -1.783 1.964 ETKDGv3 10
2KB C21 -3.924 0.127 2.232 ETKDGv3 11
2KB C22 -5.041 -0.920 2.070 ETKDGv3 12
2KB C24 -5.376 2.134 1.417 ETKDGv3 13
2KB C26 -6.849 4.203 0.789 ETKDGv3 14
2KB C28 -8.050 3.337 0.352 ETKDGv3 15
2KB N35 7.945 4.193 -1.549 ETKDGv3 16
2KB C34 8.155 3.062 -1.422 ETKDGv3 17
2KB C33 8.421 1.629 -1.260 ETKDGv3 18
2KB C32 7.722 0.829 -2.364 ETKDGv3 19
2KB C31 8.008 -0.675 -2.244 ETKDGv3 20
2KB O19 7.568 -1.188 -0.999 ETKDGv3 21
2KB C14 6.010 -3.042 -0.940 ETKDGv3 22
2KB O30 6.781 -3.652 -1.943 ETKDGv3 23
2KB C16 5.499 -0.852 0.206 ETKDGv3 24
2KB O18 6.272 -1.070 1.362 ETKDGv3 25
2KB C29 3.439 -1.039 1.539 ETKDGv3 26
2KB C12 3.562 -2.439 -0.497 ETKDGv3 27
2KB C11 2.263 -2.516 -0.859 ETKDGv3 28
2KB C3 -0.073 -1.673 -0.621 ETKDGv3 29
2KB C2 -0.674 -3.003 -1.046 ETKDGv3 30
2KB C9 -2.954 0.153 1.001 ETKDGv3 31
2KB C1 -2.203 -2.922 -1.258 ETKDGv3 32
2KB C23 -4.536 1.521 2.554 ETKDGv3 33
2KB C25 -5.996 3.473 1.862 ETKDGv3 34
2KB O36 -7.331 5.385 1.389 ETKDGv3 35
2KB C27 -5.992 4.578 -0.440 ETKDGv3 36
2KB H1 -3.329 -3.033 0.593 ETKDGv3 37
2KB H2 -3.902 -1.793 -0.540 ETKDGv3 38
2KB H3 -1.539 -0.267 -1.213 ETKDGv3 39
2KB H4 0.189 0.476 1.186 ETKDGv3 40
2KB H5 -0.204 1.417 -0.314 ETKDGv3 41
2KB H6 -1.603 1.432 2.197 ETKDGv3 42
2KB H7 -2.179 2.183 0.658 ETKDGv3 43
2KB H8 1.627 -0.483 -0.320 ETKDGv3 44
2KB H9 4.355 -4.435 -0.668 ETKDGv3 45
2KB H10 4.308 -3.505 -2.205 ETKDGv3 46
2KB H11 5.653 -1.144 -1.927 ETKDGv3 47
2KB H12 -1.000 -1.036 2.568 ETKDGv3 48
2KB H13 -2.347 -2.213 2.610 ETKDGv3 49
2KB H14 -0.859 -2.612 1.730 ETKDGv3 50
2KB H15 -3.342 -0.154 3.135 ETKDGv3 51
2KB H16 -4.638 -1.945 2.176 ETKDGv3 52
2KB H17 -5.534 -0.829 1.080 ETKDGv3 53
2KB H18 -5.810 -0.798 2.862 ETKDGv3 54
2KB H19 -4.724 2.307 0.539 ETKDGv3 55
2KB H20 -6.183 1.427 1.139 ETKDGv3 56
2KB H21 -8.634 3.009 1.239 ETKDGv3 57
2KB H22 -8.725 3.918 -0.312 ETKDGv3 58
2KB H23 -7.719 2.441 -0.213 ETKDGv3 59
2KB H24 9.518 1.462 -1.305 ETKDGv3 60
2KB H25 8.050 1.312 -0.263 ETKDGv3 61
2KB H26 8.084 1.176 -3.357 ETKDGv3 62
2KB H27 6.625 1.007 -2.320 ETKDGv3 63
2KB H28 9.105 -0.833 -2.312 ETKDGv3 64
2KB H29 7.568 -1.224 -3.108 ETKDGv3 65
2KB H30 6.363 -3.392 0.059 ETKDGv3 66
2KB H31 6.834 -4.617 -1.715 ETKDGv3 67
2KB H32 5.406 0.243 0.008 ETKDGv3 68
2KB H33 6.940 -0.337 1.410 ETKDGv3 69
2KB H34 2.489 -1.486 1.802 ETKDGv3 70
2KB H35 3.854 -0.309 2.223 ETKDGv3 71
2KB H36 1.962 -3.356 -1.473 ETKDGv3 72
2KB H37 -0.230 -3.322 -2.013 ETKDGv3 73
2KB H38 -0.442 -3.778 -0.284 ETKDGv3 74
2KB H39 -3.555 0.409 0.100 ETKDGv3 75
2KB H40 -2.392 -2.354 -2.195 ETKDGv3 76
2KB H41 -2.604 -3.946 -1.419 ETKDGv3 77
2KB H42 -3.726 2.230 2.827 ETKDGv3 78
2KB H43 -5.174 1.425 3.461 ETKDGv3 79
2KB H44 -6.634 3.289 2.755 ETKDGv3 80
2KB H45 -5.178 4.154 2.186 ETKDGv3 81
2KB H46 -7.883 5.873 0.723 ETKDGv3 82
2KB H47 -5.677 3.676 -1.004 ETKDGv3 83
2KB H48 -6.574 5.217 -1.137 ETKDGv3 84
2KB H49 -5.089 5.142 -0.125 ETKDGv3 85
#