data_1ZZ
#
_chem_comp.id 1ZZ
_chem_comp.name "5'-O-[(S)-(dodecanoyloxy)(hydroxy)phosphoryl]adenosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H36 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-03-04
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 529.524
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1ZZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3KXW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1ZZ P P P 0 1 N N N N N N 5.671 39.228 20.536 -0.022 2.166 -0.412 P 1ZZ 1
1ZZ C1 C1 C 0 1 N N N N N N -8.270 43.644 20.946 -15.572 -2.503 0.450 C1 1ZZ 2
1ZZ N1 N1 N 0 1 Y N N N N N 4.513 38.211 14.296 5.866 -0.982 -0.038 N1 1ZZ 3
1ZZ O1 O1 O 0 1 N N N N N N 2.942 38.610 19.166 -2.652 2.022 -1.029 O1 1ZZ 4
1ZZ C2 C2 C 0 1 N N N N N N -7.164 42.775 20.333 -14.487 -1.659 -0.222 C2 1ZZ 5
1ZZ N2 N2 N 0 1 Y N N N N N 2.535 39.221 14.037 5.960 -2.698 -1.384 N2 1ZZ 6
1ZZ O2 O2 O 0 1 N N N N N N 4.147 39.884 20.418 -1.106 1.249 0.347 O2 1ZZ 7
1ZZ C3 C3 C 0 1 N N N N N N -6.120 43.614 19.585 -13.146 -1.908 0.472 C3 1ZZ 8
1ZZ N3 N3 N 0 1 Y N N N N N 4.738 37.249 11.867 7.858 -1.630 1.316 N3 1ZZ 9
1ZZ O3 O3 O 0 1 N N N N N N 6.586 40.248 21.004 -0.045 1.861 -1.860 O3 1ZZ 10
1ZZ C4 C4 C 0 1 N N N N N N -4.829 42.811 19.367 -12.060 -1.064 -0.199 C4 1ZZ 11
1ZZ N4 N4 N 0 1 Y N N N N N 2.817 37.803 10.521 8.881 -3.595 0.655 N4 1ZZ 12
1ZZ O4 O4 O 0 1 N N N N N N 5.602 37.997 21.578 -0.381 3.719 -0.185 O4 1ZZ 13
1ZZ C5 C5 C 0 1 N N N N N N -3.934 43.404 18.266 -10.720 -1.312 0.495 C5 1ZZ 14
1ZZ N5 N5 N 0 1 N N N N N N 1.027 39.129 11.224 8.104 -4.890 -1.156 N5 1ZZ 15
1ZZ O5 O5 O 0 1 N N N N N N 6.175 38.604 19.074 1.445 1.862 0.177 O5 1ZZ 16
1ZZ C6 C6 C 0 1 N N N N N N -2.746 42.456 18.050 -9.634 -0.468 -0.176 C6 1ZZ 17
1ZZ O6 O6 O 0 1 N N N N N N 5.738 37.740 16.402 4.033 0.526 0.224 O6 1ZZ 18
1ZZ C7 C7 C 0 1 N N N N N N -1.720 42.655 16.907 -8.293 -0.717 0.518 C7 1ZZ 19
1ZZ O7 O7 O 0 1 N N N N N N 7.821 38.036 14.391 7.256 1.847 0.868 O7 1ZZ 20
1ZZ C8 C8 C 0 1 N N N N N N -0.637 41.585 16.666 -7.208 0.127 -0.154 C8 1ZZ 21
1ZZ O8 O8 O 0 1 N N N N N N 8.156 40.086 15.740 5.520 3.704 0.710 O8 1ZZ 22
1ZZ C9 C9 C 0 1 N N N N N N 0.530 41.823 17.638 -5.867 -0.121 0.540 C9 1ZZ 23
1ZZ C10 C10 C 0 1 N N N N N N 1.305 40.542 18.029 -4.781 0.722 -0.131 C10 1ZZ 24
1ZZ C11 C11 C 0 1 N N N N N N 2.254 40.892 19.210 -3.440 0.474 0.563 C11 1ZZ 25
1ZZ C12 C12 C 0 1 N N N N N N 3.465 39.941 19.166 -2.371 1.305 -0.098 C12 1ZZ 26
1ZZ C13 C13 C 0 1 N N N N N N 6.168 39.393 17.904 2.635 2.442 -0.361 C13 1ZZ 27
1ZZ C14 C14 C 0 1 N N R N N N 6.598 38.630 16.814 3.847 1.944 0.429 C14 1ZZ 28
1ZZ C15 C15 C 0 1 N N S N N N 6.968 39.500 15.558 5.142 2.594 -0.107 C15 1ZZ 29
1ZZ C16 C16 C 0 1 N N R N N N 6.911 38.662 14.539 6.195 1.467 -0.011 C16 1ZZ 30
1ZZ C17 C17 C 0 1 N N R N N N 5.731 37.898 14.897 5.411 0.270 0.571 C17 1ZZ 31
1ZZ C18 C18 C 0 1 Y N N N N N 3.458 39.009 14.898 5.301 -1.610 -1.108 C18 1ZZ 32
1ZZ C19 C19 C 0 1 Y N N N N N 2.938 38.507 12.788 6.989 -2.836 -0.513 C19 1ZZ 33
1ZZ C20 C20 C 0 1 Y N N N N N 4.112 37.969 12.942 6.943 -1.735 0.359 C20 1ZZ 34
1ZZ C21 C21 C 0 1 Y N N N N N 4.113 37.125 10.721 8.797 -2.543 1.449 C21 1ZZ 35
1ZZ C22 C22 C 0 1 Y N N N N N 2.271 38.431 11.430 8.007 -3.786 -0.329 C22 1ZZ 36
1ZZ H1 H1 H 0 1 N N N N N N -8.993 43.002 21.470 -15.650 -2.225 1.501 H1 1ZZ 37
1ZZ H1A H1A H 0 1 N N N N N N -7.825 44.354 21.659 -16.528 -2.326 -0.045 H1A 1ZZ 38
1ZZ H1B H1B H 0 1 N N N N N N -8.784 44.200 20.148 -15.313 -3.559 0.372 H1B 1ZZ 39
1ZZ H2 H2 H 0 1 N N N N N N -6.659 42.226 21.142 -14.409 -1.937 -1.273 H2 1ZZ 40
1ZZ H2A H2A H 0 1 N N N N N N -7.623 42.071 19.623 -14.747 -0.604 -0.143 H2A 1ZZ 41
1ZZ H3 H3 H 0 1 N N N N N N -6.529 43.907 18.607 -13.224 -1.630 1.523 H3 1ZZ 42
1ZZ H3A H3A H 0 1 N N N N N N -5.889 44.511 20.178 -12.886 -2.963 0.394 H3A 1ZZ 43
1ZZ H4 H4 H 0 1 N N N N N N -4.261 42.806 20.309 -11.982 -1.342 -1.250 H4 1ZZ 44
1ZZ H4A H4A H 0 1 N N N N N N -5.104 41.787 19.075 -12.320 -0.008 -0.121 H4A 1ZZ 45
1ZZ HO4 HO4 H 0 1 N N N N N N 6.179 38.170 22.312 -0.384 3.990 0.743 HO4 1ZZ 46
1ZZ H5 H5 H 0 1 N N N N N N -4.507 43.505 17.332 -10.798 -1.034 1.546 H5 1ZZ 47
1ZZ H5A H5A H 0 1 N N N N N N -3.570 44.396 18.573 -10.460 -2.368 0.417 H5A 1ZZ 48
1ZZ HN5 HN5 H 0 1 N N N N N N 0.729 39.007 10.277 8.815 -5.536 -1.023 HN5 1ZZ 49
1ZZ HN5A HN5A H 0 0 N N N N N N 0.332 38.761 11.842 7.460 -5.019 -1.871 HN5A 1ZZ 50
1ZZ HO7 HO7 H 0 1 N N N N N N 7.695 37.466 13.642 7.743 2.631 0.580 HO7 1ZZ 51
1ZZ H8 H8 H 0 1 N N N N N N -1.062 40.585 16.837 -7.129 -0.151 -1.205 H8 1ZZ 52
1ZZ H8A H8A H 0 1 N N N N N N -0.274 41.654 15.630 -7.467 1.183 -0.075 H8A 1ZZ 53
1ZZ HO8 HO8 H 0 1 N N N N N N 8.372 40.609 14.977 6.328 4.149 0.418 HO8 1ZZ 54
1ZZ H9 H9 H 0 1 N N N N N N 1.238 42.512 17.154 -5.945 0.157 1.592 H9 1ZZ 55
1ZZ H9A H9A H 0 1 N N N N N N 0.119 42.263 18.558 -5.607 -1.177 0.462 H9A 1ZZ 56
1ZZ H10 H10 H 0 1 N N N N N N 0.599 39.756 18.336 -4.703 0.444 -1.182 H10 1ZZ 57
1ZZ H10A H10A H 0 0 N N N N N N 1.892 40.182 17.171 -5.041 1.778 -0.053 H10A 1ZZ 58
1ZZ H11 H11 H 0 1 N N N N N N 2.595 41.933 19.117 -3.519 0.752 1.614 H11 1ZZ 59
1ZZ H11A H11A H 0 0 N N N N N N 1.720 40.771 20.164 -3.181 -0.581 0.485 H11A 1ZZ 60
1ZZ H13 H13 H 0 1 N N N N N N 5.147 39.755 17.715 2.739 2.152 -1.407 H13 1ZZ 61
1ZZ H13A H13A H 0 0 N N N N N N 6.844 40.250 18.038 2.575 3.527 -0.289 H13A 1ZZ 62
1ZZ H14 H14 H 0 1 N N N N N N 7.486 38.124 17.221 3.723 2.161 1.490 H14 1ZZ 63
1ZZ H15 H15 H 0 1 N N N N N N 6.284 40.341 15.375 5.011 2.910 -1.142 H15 1ZZ 64
1ZZ H16 H16 H 0 1 N N N N N N 6.860 39.163 13.561 6.587 1.225 -0.999 H16 1ZZ 65
1ZZ H17 H17 H 0 1 N N N N N N 5.816 36.913 14.415 5.530 0.229 1.654 H17 1ZZ 66
1ZZ H18 H18 H 0 1 N N N N N N 3.454 39.368 15.916 4.435 -1.258 -1.647 H18 1ZZ 67
1ZZ H21 H21 H 0 1 N N N N N N 4.544 36.531 9.929 9.528 -2.427 2.236 H21 1ZZ 68
1ZZ H6 H6 H 0 1 N N N N N N -2.160 42.507 18.979 -9.556 -0.747 -1.227 H6 1ZZ 69
1ZZ H34 H34 H 0 1 N N N N N N -3.192 41.466 17.872 -9.894 0.587 -0.098 H34 1ZZ 70
1ZZ H7 H7 H 0 1 N N N N N N -2.303 42.718 15.977 -8.371 -0.439 1.569 H7 1ZZ 71
1ZZ H36 H36 H 0 1 N N N N N N -1.185 43.590 17.132 -8.033 -1.772 0.440 H36 1ZZ 72
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1ZZ P O3 DOUB N N 1
1ZZ P O4 SING N N 2
1ZZ N1 C17 SING N N 3
1ZZ N1 C18 SING Y N 4
1ZZ O1 C12 DOUB N N 5
1ZZ C2 C1 SING N N 6
1ZZ N2 C18 DOUB Y N 7
1ZZ O2 P SING N N 8
1ZZ C3 C2 SING N N 9
1ZZ N3 C20 DOUB Y N 10
1ZZ C4 C3 SING N N 11
1ZZ N4 C21 DOUB Y N 12
1ZZ N4 C22 SING Y N 13
1ZZ C5 C4 SING N N 14
1ZZ N5 C22 SING N N 15
1ZZ O5 P SING N N 16
1ZZ C6 C5 SING N N 17
1ZZ O6 C14 SING N N 18
1ZZ C7 C6 SING N N 19
1ZZ O7 C16 SING N N 20
1ZZ C8 C7 SING N N 21
1ZZ C8 C9 SING N N 22
1ZZ C9 C10 SING N N 23
1ZZ C10 C11 SING N N 24
1ZZ C12 O2 SING N N 25
1ZZ C12 C11 SING N N 26
1ZZ C13 O5 SING N N 27
1ZZ C14 C13 SING N N 28
1ZZ C15 O8 SING N N 29
1ZZ C15 C14 SING N N 30
1ZZ C16 C15 SING N N 31
1ZZ C16 C17 SING N N 32
1ZZ C17 O6 SING N N 33
1ZZ C19 N2 SING Y N 34
1ZZ C19 C20 SING Y N 35
1ZZ C20 N1 SING Y N 36
1ZZ C21 N3 SING Y N 37
1ZZ C22 C19 DOUB Y N 38
1ZZ C1 H1 SING N N 39
1ZZ C1 H1A SING N N 40
1ZZ C1 H1B SING N N 41
1ZZ C2 H2 SING N N 42
1ZZ C2 H2A SING N N 43
1ZZ C3 H3 SING N N 44
1ZZ C3 H3A SING N N 45
1ZZ C4 H4 SING N N 46
1ZZ C4 H4A SING N N 47
1ZZ O4 HO4 SING N N 48
1ZZ C5 H5 SING N N 49
1ZZ C5 H5A SING N N 50
1ZZ N5 HN5 SING N N 51
1ZZ N5 HN5A SING N N 52
1ZZ O7 HO7 SING N N 53
1ZZ C8 H8 SING N N 54
1ZZ C8 H8A SING N N 55
1ZZ O8 HO8 SING N N 56
1ZZ C9 H9 SING N N 57
1ZZ C9 H9A SING N N 58
1ZZ C10 H10 SING N N 59
1ZZ C10 H10A SING N N 60
1ZZ C11 H11 SING N N 61
1ZZ C11 H11A SING N N 62
1ZZ C13 H13 SING N N 63
1ZZ C13 H13A SING N N 64
1ZZ C14 H14 SING N N 65
1ZZ C15 H15 SING N N 66
1ZZ C16 H16 SING N N 67
1ZZ C17 H17 SING N N 68
1ZZ C18 H18 SING N N 69
1ZZ C21 H21 SING N N 70
1ZZ C6 H6 SING N N 71
1ZZ C6 H34 SING N N 72
1ZZ C7 H7 SING N N 73
1ZZ C7 H36 SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1ZZ SMILES ACDLabs 12.01 O=P(OC(=O)CCCCCCCCCCC)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
1ZZ SMILES_CANONICAL CACTVS 3.370 CCCCCCCCCCCC(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
1ZZ SMILES CACTVS 3.370 CCCCCCCCCCCC(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
1ZZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CCCCCCCCCCCC(=O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O
1ZZ SMILES "OpenEye OEToolkits" 1.7.0 CCCCCCCCCCCC(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O
1ZZ InChI InChI 1.03 InChI=1S/C22H36N5O8P/c1-2-3-4-5-6-7-8-9-10-11-16(28)35-36(31,32)33-12-15-18(29)19(30)22(34-15)27-14-26-17-20(23)24-13-25-21(17)27/h13-15,18-19,22,29-30H,2-12H2,1H3,(H,31,32)(H2,23,24,25)/t15-,18-,19-,22-/m1/s1
1ZZ InChIKey InChI 1.03 IKBWVSPLSBIYSK-CIVUBGFFSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1ZZ "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(S)-(dodecanoyloxy)(hydroxy)phosphoryl]adenosine"
1ZZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] dodecanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1ZZ 'Create component' 2010-03-04 RCSB
1ZZ 'Modify aromatic_flag' 2011-06-04 RCSB
1ZZ 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1ZZ P P 7.571 -2.088 1
1ZZ C1 C 10.377 14.581 2
1ZZ N1 N 7.018 -9.909 3
1ZZ O1 O 9.582 0.138 4
1ZZ C2 C 10.838 13.154 5
1ZZ N2 N 7.018 -12.323 6
1ZZ O2 O 7.110 -0.661 7
1ZZ C3 C 9.833 12.041 8
1ZZ N3 N 4.299 -9.616 9
1ZZ O3 O 8.998 -1.627 10
1ZZ C4 C 10.294 10.613 11
1ZZ N4 N 3.000 -11.866 12
1ZZ O4 O 6.144 -2.550 13
1ZZ C5 C 9.288 9.500 14
1ZZ N5 N 4.299 -14.116 15
1ZZ O5 O 8.032 -3.516 16
1ZZ C6 C 9.749 8.073 17
1ZZ O6 O 6.604 -7.268 18
1ZZ C7 C 8.744 6.960 19
1ZZ O7 O 10.123 -8.906 20
1ZZ C8 C 9.205 5.533 21
1ZZ O8 O 10.129 -5.643 22
1ZZ C9 C 8.199 4.420 23
1ZZ C10 C 8.660 2.992 24
1ZZ C11 C 7.655 1.879 25
1ZZ C12 C 8.116 0.452 26
1ZZ C13 C 7.027 -4.629 27
1ZZ C14 C 7.487 -6.056 28
1ZZ C15 C 8.913 -6.522 29
1ZZ C16 C 8.911 -8.022 30
1ZZ C17 C 7.483 -8.483 31
1ZZ C18 C 7.893 -11.116 32
1ZZ C19 C 5.598 -11.866 33
1ZZ C20 C 5.598 -10.366 34
1ZZ C21 C 3.000 -10.366 35
1ZZ C22 C 4.299 -12.616 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1ZZ P O3 DOUBLE NONE 1
1ZZ P O4 SINGLE BEGINWEDGE 2
1ZZ C17 N1 SINGLE BEGINDASH 3
1ZZ N1 C18 SINGLE NONE 4
1ZZ O1 C12 DOUBLE NONE 5
1ZZ C2 C1 SINGLE NONE 6
1ZZ N2 C18 DOUBLE NONE 7
1ZZ O2 P SINGLE NONE 8
1ZZ C3 C2 SINGLE NONE 9
1ZZ N3 C20 SINGLE NONE 10
1ZZ C4 C3 SINGLE NONE 11
1ZZ N4 C21 SINGLE NONE 12
1ZZ N4 C22 DOUBLE NONE 13
1ZZ C5 C4 SINGLE NONE 14
1ZZ N5 C22 SINGLE NONE 15
1ZZ O5 P SINGLE NONE 16
1ZZ C6 C5 SINGLE NONE 17
1ZZ O6 C14 SINGLE NONE 18
1ZZ C7 C6 SINGLE NONE 19
1ZZ C16 O7 SINGLE BEGINWEDGE 20
1ZZ C8 C7 SINGLE NONE 21
1ZZ C8 C9 SINGLE NONE 22
1ZZ C9 C10 SINGLE NONE 23
1ZZ C10 C11 SINGLE NONE 24
1ZZ C12 O2 SINGLE NONE 25
1ZZ C12 C11 SINGLE NONE 26
1ZZ C13 O5 SINGLE NONE 27
1ZZ C14 C13 SINGLE BEGINDASH 28
1ZZ C15 O8 SINGLE BEGINWEDGE 29
1ZZ C15 C14 SINGLE NONE 30
1ZZ C16 C15 SINGLE NONE 31
1ZZ C16 C17 SINGLE NONE 32
1ZZ C17 O6 SINGLE NONE 33
1ZZ C19 N2 SINGLE NONE 34
1ZZ C19 C20 DOUBLE NONE 35
1ZZ C20 N1 SINGLE NONE 36
1ZZ C21 N3 DOUBLE NONE 37
1ZZ C22 C19 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1ZZ MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
1ZZ adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
1ZZ imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
1ZZ phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
1ZZ purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
1ZZ pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
1ZZ ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1ZZ N1 S1 1
1ZZ N2 S1 1
1ZZ N3 S1 1
1ZZ N4 S1 1
1ZZ O6 S1 1
1ZZ C14 S1 1
1ZZ C15 S1 1
1ZZ C16 S1 1
1ZZ C17 S1 1
1ZZ C18 S1 1
1ZZ C19 S1 1
1ZZ C20 S1 1
1ZZ C21 S1 1
1ZZ C22 S1 1
1ZZ N4 F1 1
1ZZ C22 F1 1
1ZZ C19 F1 1
1ZZ C20 F1 1
1ZZ N3 F1 1
1ZZ C21 F1 1
1ZZ N1 F1 1
1ZZ C18 F1 1
1ZZ N2 F1 1
1ZZ N5 F1 1
1ZZ C19 F2 1
1ZZ C20 F2 1
1ZZ N1 F2 1
1ZZ C18 F2 1
1ZZ N2 F2 1
1ZZ O2 F3 1
1ZZ P F3 1
1ZZ O3 F3 1
1ZZ O4 F3 1
1ZZ O5 F3 1
1ZZ N2 F4 1
1ZZ C18 F4 1
1ZZ N1 F4 1
1ZZ C20 F4 1
1ZZ C19 F4 1
1ZZ C22 F4 1
1ZZ N4 F4 1
1ZZ C21 F4 1
1ZZ N3 F4 1
1ZZ C19 F5 1
1ZZ C20 F5 1
1ZZ N3 F5 1
1ZZ C21 F5 1
1ZZ N4 F5 1
1ZZ C22 F5 1
1ZZ C16 F6 1
1ZZ C15 F6 1
1ZZ C14 F6 1
1ZZ O6 F6 1
1ZZ C17 F6 1
1ZZ C13 F6 1
1ZZ O5 F6 1
1ZZ O8 F6 1
1ZZ O7 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1ZZ
_pdbe_chem_comp_rdkit_properties.exactmw 529.230
_pdbe_chem_comp_rdkit_properties.amw 529.531
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 20
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 72
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.727
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 260.119
_pdbe_chem_comp_rdkit_properties.tpsa 192.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.800
_pdbe_chem_comp_rdkit_properties.CrippenMR 126.342
_pdbe_chem_comp_rdkit_properties.chi0v 17.844
_pdbe_chem_comp_rdkit_properties.chi1v 10.106
_pdbe_chem_comp_rdkit_properties.chi2v 4.031
_pdbe_chem_comp_rdkit_properties.chi3v 4.031
_pdbe_chem_comp_rdkit_properties.chi4v 2.497
_pdbe_chem_comp_rdkit_properties.chi0n 52.949
_pdbe_chem_comp_rdkit_properties.chi1n 26.264
_pdbe_chem_comp_rdkit_properties.chi2n 3.327
_pdbe_chem_comp_rdkit_properties.chi3n 3.327
_pdbe_chem_comp_rdkit_properties.chi4n 2.016
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.150
_pdbe_chem_comp_rdkit_properties.kappa1 7.076
_pdbe_chem_comp_rdkit_properties.kappa2 13.410
_pdbe_chem_comp_rdkit_properties.kappa3 7.674
_pdbe_chem_comp_rdkit_properties.Phi 2.636
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1ZZ UniChem ChEBI 84312
1ZZ UniChem ZINC ZINC000058632309
1ZZ UniChem SureChEMBL SCHEMBL11909558
1ZZ UniChem LipidMaps LMFA07080004
1ZZ UniChem BRENDA 215066
1ZZ UniChem PubChem 25113192
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1ZZ P 2.163 1.763 -0.389 ETKDGv3 1
1ZZ C1 -9.452 -1.298 -2.200 ETKDGv3 2
1ZZ N1 7.012 -1.644 0.252 ETKDGv3 3
1ZZ O1 -0.089 0.906 1.424 ETKDGv3 4
1ZZ C2 -9.458 0.224 -2.054 ETKDGv3 5
1ZZ N2 9.082 -1.637 -0.740 ETKDGv3 6
1ZZ O2 0.765 0.814 -0.725 ETKDGv3 7
1ZZ C3 -9.534 0.673 -0.579 ETKDGv3 8
1ZZ N3 6.087 0.353 -1.043 ETKDGv3 9
1ZZ O3 2.606 2.428 -1.672 ETKDGv3 10
1ZZ C4 -8.187 1.148 -0.009 ETKDGv3 11
1ZZ N4 7.668 1.287 -2.577 ETKDGv3 12
1ZZ O4 1.794 2.966 0.745 ETKDGv3 13
1ZZ C5 -7.157 0.017 0.110 ETKDGv3 14
1ZZ N5 9.842 0.411 -2.960 ETKDGv3 15
1ZZ O5 3.443 0.789 0.177 ETKDGv3 16
1ZZ C6 -5.889 0.500 0.828 ETKDGv3 17
1ZZ O6 4.805 -1.479 1.041 ETKDGv3 18
1ZZ C7 -4.884 -0.635 1.094 ETKDGv3 19
1ZZ O7 6.840 -1.072 3.675 ETKDGv3 20
1ZZ C8 -4.334 -1.328 -0.169 ETKDGv3 21
1ZZ O8 5.030 0.796 3.764 ETKDGv3 22
1ZZ C9 -3.661 -0.390 -1.191 ETKDGv3 23
1ZZ C10 -2.500 0.451 -0.633 ETKDGv3 24
1ZZ C11 -1.331 -0.406 -0.133 ETKDGv3 25
1ZZ C12 -0.175 0.462 0.247 ETKDGv3 26
1ZZ C13 3.034 0.133 1.354 ETKDGv3 27
1ZZ C14 4.222 -0.608 1.978 ETKDGv3 28
1ZZ C15 5.310 0.336 2.466 ETKDGv3 29
1ZZ C16 6.548 -0.533 2.410 ETKDGv3 30
1ZZ C17 6.150 -1.652 1.433 ETKDGv3 31
1ZZ C18 8.343 -2.177 0.186 ETKDGv3 32
1ZZ C19 8.231 -0.670 -1.344 ETKDGv3 33
1ZZ C20 7.059 -0.662 -0.768 ETKDGv3 34
1ZZ C21 6.377 1.278 -1.919 ETKDGv3 35
1ZZ C22 8.569 0.376 -2.317 ETKDGv3 36
1ZZ H1 -8.590 -1.747 -1.667 ETKDGv3 37
1ZZ H1A -9.382 -1.567 -3.275 ETKDGv3 38
1ZZ H1B -10.392 -1.726 -1.791 ETKDGv3 39
1ZZ H2 -10.349 0.612 -2.595 ETKDGv3 40
1ZZ H2A -8.563 0.649 -2.557 ETKDGv3 41
1ZZ H3 -9.957 -0.129 0.066 ETKDGv3 42
1ZZ H3A -10.240 1.530 -0.515 ETKDGv3 43
1ZZ H4 -7.778 1.964 -0.645 ETKDGv3 44
1ZZ H4A -8.377 1.574 1.001 ETKDGv3 45
1ZZ HO4 2.665 3.387 0.958 ETKDGv3 46
1ZZ H5 -7.602 -0.832 0.674 ETKDGv3 47
1ZZ H5A -6.886 -0.327 -0.909 ETKDGv3 48
1ZZ HN5 10.563 -0.316 -2.753 ETKDGv3 49
1ZZ HN5A 10.067 1.164 -3.646 ETKDGv3 50
1ZZ HO7 7.746 -1.472 3.607 ETKDGv3 51
1ZZ H8 -5.159 -1.872 -0.677 ETKDGv3 52
1ZZ H8A -3.609 -2.109 0.144 ETKDGv3 53
1ZZ HO8 5.685 1.517 3.952 ETKDGv3 54
1ZZ H9 -4.424 0.292 -1.624 ETKDGv3 55
1ZZ H9A -3.282 -1.007 -2.035 ETKDGv3 56
1ZZ H10 -2.860 1.115 0.181 ETKDGv3 57
1ZZ H10A -2.137 1.109 -1.453 ETKDGv3 58
1ZZ H11 -1.008 -1.109 -0.931 ETKDGv3 59
1ZZ H11A -1.641 -1.001 0.752 ETKDGv3 60
1ZZ H13 2.253 -0.622 1.114 ETKDGv3 61
1ZZ H13A 2.637 0.850 2.108 ETKDGv3 62
1ZZ H14 3.843 -1.214 2.834 ETKDGv3 63
1ZZ H15 5.426 1.196 1.764 ETKDGv3 64
1ZZ H16 7.412 0.069 2.043 ETKDGv3 65
1ZZ H17 6.239 -2.647 1.925 ETKDGv3 66
1ZZ H18 8.715 -2.936 0.861 ETKDGv3 67
1ZZ H21 5.654 2.051 -2.143 ETKDGv3 68
1ZZ H6 -6.175 0.932 1.812 ETKDGv3 69
1ZZ H34 -5.408 1.313 0.243 ETKDGv3 70
1ZZ H7 -4.038 -0.233 1.691 ETKDGv3 71
1ZZ H36 -5.375 -1.405 1.729 ETKDGv3 72
#