data_1WU
#
_chem_comp.id 1WU
_chem_comp.name 6-[4-(aminomethyl)-2-fluorophenoxy]-2,1-benzoxaborol-1(3H)-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H13 B F N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 6-[4-(aminomethyl)-2-fluorophenoxy]benzo[c][1,2]oxaborol-1(3H)-ol
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-07-12
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 273.067
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1WU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4L6Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1WU F7 F7 F 0 1 N N N N N N -3.012 -36.184 -41.732 2.888 -2.262 -1.428 F7 1WU 1
1WU C3 C3 C 0 1 Y N N N N N -4.046 -36.052 -42.571 2.746 -1.174 -0.639 C3 1WU 2
1WU C5 C5 C 0 1 Y N N N N N -4.484 -37.113 -43.353 3.852 -0.421 -0.292 C5 1WU 3
1WU C6 C6 C 0 1 Y N N N N N -5.575 -36.950 -44.224 3.706 0.692 0.516 C6 1WU 4
1WU C8 C8 C 0 1 N N N N N N -6.102 -38.162 -45.138 4.913 1.512 0.892 C8 1WU 5
1WU N9 N9 N 0 1 N N N N N N -5.030 -38.703 -46.063 5.119 2.568 -0.108 N9 1WU 6
1WU C4 C4 C 0 1 Y N N N N N -6.190 -35.679 -44.268 2.455 1.054 0.978 C4 1WU 7
1WU C2 C2 C 0 1 Y N N N N N -5.725 -34.611 -43.473 1.345 0.305 0.635 C2 1WU 8
1WU C1 C1 C 0 1 Y N N N N N -4.650 -34.822 -42.616 1.487 -0.808 -0.180 C1 1WU 9
1WU O10 O10 O 0 1 N N N N N N -4.106 -33.871 -41.795 0.397 -1.546 -0.519 O10 1WU 10
1WU C15 C15 C 0 1 Y N N N N N -4.797 -32.911 -41.063 -0.814 -1.150 -0.047 C15 1WU 11
1WU C13 C13 C 0 1 Y N N N N N -4.223 -31.634 -40.981 -1.590 -0.267 -0.783 C13 1WU 12
1WU C16 C16 C 0 1 Y N N N N N -6.019 -33.149 -40.387 -1.278 -1.633 1.169 C16 1WU 13
1WU C14 C14 C 0 1 Y N N N N N -6.642 -32.110 -39.654 -2.510 -1.234 1.655 C14 1WU 14
1WU C12 C12 C 0 1 Y N N N N N -6.036 -30.866 -39.603 -3.287 -0.351 0.932 C12 1WU 15
1WU C18 C18 C 0 1 N N N N N N -6.501 -29.603 -38.906 -4.641 0.255 1.191 C18 1WU 16
1WU O19 O19 O 0 1 N N N N N N -5.556 -28.566 -39.203 -4.989 1.115 0.108 O19 1WU 17
1WU B17 B17 B 0 1 N N N N N N -4.451 -29.167 -40.028 -3.934 1.102 -0.844 B17 1WU 18
1WU C11 C11 C 0 1 Y N N N N N -4.870 -30.657 -40.251 -2.828 0.133 -0.293 C11 1WU 19
1WU O20 O20 O 0 1 N N N N N N -3.220 -28.507 -40.553 -3.890 1.826 -2.065 O20 1WU 20
1WU H1 H1 H 0 1 N N N N N N -3.984 -38.068 -43.291 4.831 -0.702 -0.652 H1 1WU 21
1WU H2 H2 H 0 1 N N N N N N -6.945 -37.803 -45.747 4.754 1.964 1.871 H2 1WU 22
1WU H3 H3 H 0 1 N N N N N N -6.444 -38.976 -44.481 5.793 0.869 0.928 H3 1WU 23
1WU H4 H4 H 0 1 N N N N N N -5.406 -39.452 -46.608 4.293 3.139 -0.206 H4 1WU 24
1WU H5 H5 H 0 1 N N N N N N -4.716 -37.974 -46.671 5.923 3.132 0.123 H5 1WU 25
1WU H7 H7 H 0 1 N N N N N N -7.034 -35.522 -44.924 2.344 1.924 1.609 H7 1WU 26
1WU H8 H8 H 0 1 N N N N N N -6.198 -33.642 -43.529 0.368 0.589 0.997 H8 1WU 27
1WU H9 H9 H 0 1 N N N N N N -3.290 -31.418 -41.481 -1.235 0.108 -1.731 H9 1WU 28
1WU H10 H10 H 0 1 N N N N N N -6.477 -34.126 -40.431 -0.674 -2.323 1.739 H10 1WU 29
1WU H11 H11 H 0 1 N N N N N N -7.577 -32.285 -39.142 -2.865 -1.613 2.602 H11 1WU 30
1WU H12 H12 H 0 1 N N N N N N -7.498 -29.318 -39.274 -5.384 -0.538 1.280 H12 1WU 31
1WU H13 H13 H 0 1 N N N N N N -3.211 -27.595 -40.288 -4.673 2.369 -2.229 H13 1WU 32
1WU H6 H6 H 0 1 N N N N N N -6.545 -29.770 -37.820 -4.610 0.830 2.117 H6 1WU 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1WU N9 C8 SING N N 1
1WU C8 C6 SING N N 2
1WU C4 C6 DOUB Y N 3
1WU C4 C2 SING Y N 4
1WU C6 C5 SING Y N 5
1WU C2 C1 DOUB Y N 6
1WU C5 C3 DOUB Y N 7
1WU C1 C3 SING Y N 8
1WU C1 O10 SING N N 9
1WU C3 F7 SING N N 10
1WU O10 C15 SING N N 11
1WU C15 C13 DOUB Y N 12
1WU C15 C16 SING Y N 13
1WU C13 C11 SING Y N 14
1WU O20 B17 SING N N 15
1WU C16 C14 DOUB Y N 16
1WU C11 B17 SING N N 17
1WU C11 C12 DOUB Y N 18
1WU B17 O19 SING N N 19
1WU C14 C12 SING Y N 20
1WU C12 C18 SING N N 21
1WU O19 C18 SING N N 22
1WU C5 H1 SING N N 23
1WU C8 H2 SING N N 24
1WU C8 H3 SING N N 25
1WU N9 H4 SING N N 26
1WU N9 H5 SING N N 27
1WU C4 H7 SING N N 28
1WU C2 H8 SING N N 29
1WU C13 H9 SING N N 30
1WU C16 H10 SING N N 31
1WU C14 H11 SING N N 32
1WU C18 H12 SING N N 33
1WU O20 H13 SING N N 34
1WU C18 H6 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1WU SMILES ACDLabs 12.01 Fc3cc(ccc3Oc2ccc1c(B(O)OC1)c2)CN
1WU InChI InChI 1.03 InChI=1S/C14H13BFNO3/c16-13-5-9(7-17)1-4-14(13)20-11-3-2-10-8-19-15(18)12(10)6-11/h1-6,18H,7-8,17H2
1WU InChIKey InChI 1.03 TUWUQFIFQVYZSK-UHFFFAOYSA-N
1WU SMILES_CANONICAL CACTVS 3.385 NCc1ccc(Oc2ccc3COB(O)c3c2)c(F)c1
1WU SMILES CACTVS 3.385 NCc1ccc(Oc2ccc3COB(O)c3c2)c(F)c1
1WU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 B1(c2cc(ccc2CO1)Oc3ccc(cc3F)CN)O
1WU SMILES "OpenEye OEToolkits" 1.7.6 B1(c2cc(ccc2CO1)Oc3ccc(cc3F)CN)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1WU "SYSTEMATIC NAME" ACDLabs 12.01 6-[4-(aminomethyl)-2-fluorophenoxy]-2,1-benzoxaborol-1(3H)-ol
1WU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[3-fluoranyl-4-[(1-oxidanyl-3H-2,1-benzoxaborol-6-yl)oxy]phenyl]methanamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1WU 'Create component' 2013-07-12 RCSB
1WU 'Initial release' 2013-10-02 RCSB
1WU 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 1WU
_pdbx_chem_comp_synonyms.name 6-[4-(aminomethyl)-2-fluorophenoxy]benzo[c][1,2]oxaborol-1(3H)-ol
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 1WU
_pdbe_chem_comp_synonyms.name '6-[4-(aminomethyl)-2-fluorophenoxy]benzo[c][1,2]oxaborol-1(3H)-ol'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1WU F7 F 10.301 2.162 1
1WU C3 C 9.002 1.412 2
1WU C5 C 7.702 2.162 3
1WU C6 C 6.404 1.412 4
1WU C8 C 5.104 2.162 5
1WU N9 N 3.805 1.412 6
1WU C4 C 6.404 -0.088 7
1WU C2 C 7.702 -0.838 8
1WU C1 C 9.002 -0.088 9
1WU O10 O 10.301 -0.838 10
1WU C15 C 11.600 -0.088 11
1WU C13 C 12.899 -0.838 12
1WU C16 C 11.600 1.412 13
1WU C14 C 12.899 2.162 14
1WU C12 C 14.198 1.412 15
1WU C18 C 15.617 1.869 16
1WU O19 O 16.492 0.662 17
1WU B17 B 15.617 -0.545 18
1WU C11 C 14.198 -0.088 19
1WU O20 O 16.083 -1.971 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1WU N9 C8 SINGLE NONE 1
1WU C8 C6 SINGLE NONE 2
1WU C4 C6 DOUBLE NONE 3
1WU C4 C2 SINGLE NONE 4
1WU C6 C5 SINGLE NONE 5
1WU C2 C1 DOUBLE NONE 6
1WU C5 C3 DOUBLE NONE 7
1WU C1 C3 SINGLE NONE 8
1WU C1 O10 SINGLE NONE 9
1WU C3 F7 SINGLE NONE 10
1WU O10 C15 SINGLE NONE 11
1WU C15 C13 DOUBLE NONE 12
1WU C15 C16 SINGLE NONE 13
1WU C13 C11 SINGLE NONE 14
1WU O20 B17 SINGLE NONE 15
1WU C16 C14 DOUBLE NONE 16
1WU C11 B17 SINGLE NONE 17
1WU C11 C12 DOUBLE NONE 18
1WU B17 O19 SINGLE NONE 19
1WU C14 C12 SINGLE NONE 20
1WU C12 C18 SINGLE NONE 21
1WU O19 C18 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1WU MurckoScaffold S1 scaffold B1OCc2ccc(Oc3ccccc3)cc21 InChI=1S/C13H11BO2/c1-2-4-11(5-3-1)16-12-7-6-10-9-15-14-13(10)8-12/h1-8,14H,9H2 AJPFRNJIOZRUSN-UHFFFAOYSA-N
1WU phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1WU C3 S1 1
1WU C5 S1 1
1WU C6 S1 1
1WU C4 S1 1
1WU C2 S1 1
1WU C1 S1 1
1WU O10 S1 1
1WU C15 S1 1
1WU C13 S1 1
1WU C16 S1 1
1WU C14 S1 1
1WU C12 S1 1
1WU C18 S1 1
1WU O19 S1 1
1WU B17 S1 1
1WU C11 S1 1
1WU C3 F1 1
1WU C5 F1 1
1WU C6 F1 1
1WU C4 F1 1
1WU C2 F1 1
1WU C1 F1 1
1WU C15 F1 2
1WU C13 F1 2
1WU C11 F1 2
1WU C12 F1 2
1WU C14 F1 2
1WU C16 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 1WU
_pdbe_chem_comp_rdkit_properties.exactmw 273.097
_pdbe_chem_comp_rdkit_properties.amw 273.072
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 134.099
_pdbe_chem_comp_rdkit_properties.tpsa 64.710
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.260
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.451
_pdbe_chem_comp_rdkit_properties.chi0v 9.627
_pdbe_chem_comp_rdkit_properties.chi1v 5.285
_pdbe_chem_comp_rdkit_properties.chi2v 2.373
_pdbe_chem_comp_rdkit_properties.chi3v 2.373
_pdbe_chem_comp_rdkit_properties.chi4v 1.483
_pdbe_chem_comp_rdkit_properties.chi0n 22.627
_pdbe_chem_comp_rdkit_properties.chi1n 11.588
_pdbe_chem_comp_rdkit_properties.chi2n 2.373
_pdbe_chem_comp_rdkit_properties.chi3n 2.373
_pdbe_chem_comp_rdkit_properties.chi4n 1.483
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.885
_pdbe_chem_comp_rdkit_properties.kappa1 4.839
_pdbe_chem_comp_rdkit_properties.kappa2 5.243
_pdbe_chem_comp_rdkit_properties.kappa3 2.406
_pdbe_chem_comp_rdkit_properties.Phi 1.269
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1WU UniChem ZINC ZINC000202367703
1WU UniChem SureChEMBL SCHEMBL12446572
1WU UniChem 'PubChem TPHARMA' 163680803
1WU UniChem PubChem 58333270
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1WU F7 0.197 0.530 -1.636 ETKDGv3 1
1WU C3 1.340 0.447 -0.911 ETKDGv3 2
1WU C5 2.480 0.097 -1.520 ETKDGv3 3
1WU C6 3.756 0.070 -0.766 ETKDGv3 4
1WU C8 5.023 -0.373 -1.451 ETKDGv3 5
1WU N9 5.202 -1.819 -1.339 ETKDGv3 6
1WU C4 3.759 0.398 0.537 ETKDGv3 7
1WU C2 2.504 0.793 1.208 ETKDGv3 8
1WU C1 1.344 0.795 0.537 ETKDGv3 9
1WU O10 0.173 1.167 1.209 ETKDGv3 10
1WU C15 -1.079 0.568 1.019 ETKDGv3 11
1WU C13 -2.187 1.279 1.295 ETKDGv3 12
1WU C16 -1.211 -0.853 0.559 ETKDGv3 13
1WU C14 -2.426 -1.401 0.384 ETKDGv3 14
1WU C12 -3.621 -0.589 0.676 ETKDGv3 15
1WU C18 -5.049 -0.965 0.434 ETKDGv3 16
1WU O19 -5.871 0.112 0.863 ETKDGv3 17
1WU B17 -4.918 1.180 1.209 ETKDGv3 18
1WU C11 -3.500 0.637 1.114 ETKDGv3 19
1WU O20 -5.207 2.580 0.913 ETKDGv3 20
1WU H1 2.471 -0.150 -2.574 ETKDGv3 21
1WU H2 5.905 0.141 -1.010 ETKDGv3 22
1WU H3 4.989 -0.093 -2.526 ETKDGv3 23
1WU H4 5.236 -2.076 -0.325 ETKDGv3 24
1WU H5 4.370 -2.295 -1.759 ETKDGv3 25
1WU H7 4.676 0.371 1.112 ETKDGv3 26
1WU H8 2.525 1.060 2.258 ETKDGv3 27
1WU H9 -2.119 2.304 1.636 ETKDGv3 28
1WU H10 -0.328 -1.449 0.369 ETKDGv3 29
1WU H11 -2.526 -2.422 0.040 ETKDGv3 30
1WU H12 -5.302 -1.880 1.010 ETKDGv3 31
1WU H13 -5.396 2.987 1.796 ETKDGv3 32
1WU H6 -5.213 -1.152 -0.649 ETKDGv3 33
#