data_1VG
#
_chem_comp.id 1VG
_chem_comp.name 2-[4-(1H-tetrazol-5-yl)phenyl]-4H-chromen-4-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H10 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-06-18
_chem_comp.pdbx_modified_date 2013-10-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 290.276
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1VG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4L34
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1VG CAC CAC C 0 1 N N N N N N 7.631 38.208 12.763 -1.750 1.509 0.006 CAC 1VG 1
1VG CAB CAB C 0 1 N N N N N N 7.528 37.931 14.115 -3.160 1.620 0.006 CAB 1VG 2
1VG OAA OAA O 0 1 N N N N N N 8.307 38.499 14.915 -3.710 2.709 0.008 OAA 1VG 3
1VG CAK CAK C 0 1 Y N N N N N 6.666 36.897 14.520 -3.940 0.366 0.002 CAK 1VG 4
1VG CAJ CAJ C 0 1 Y N N N N N 6.477 36.616 15.855 -5.333 0.379 0.001 CAJ 1VG 5
1VG CAI CAI C 0 1 Y N N N N N 5.621 35.567 16.223 -6.024 -0.813 -0.003 CAI 1VG 6
1VG CAH CAH C 0 1 Y N N N N N 4.946 34.812 15.247 -5.339 -2.019 -0.005 CAH 1VG 7
1VG CAG CAG C 0 1 Y N N N N N 5.099 35.115 13.892 -3.960 -2.045 -0.004 CAG 1VG 8
1VG CAF CAF C 0 1 Y N N N N N 5.962 36.160 13.561 -3.245 -0.854 -0.000 CAF 1VG 9
1VG OAE OAE O 0 1 N N N N N N 6.121 36.481 12.246 -1.895 -0.857 0.000 OAE 1VG 10
1VG CAD CAD C 0 1 N N N N N N 6.801 37.576 11.851 -1.175 0.276 -0.002 CAD 1VG 11
1VG CAL CAL C 0 1 Y N N N N N 6.851 37.725 10.462 0.298 0.180 -0.002 CAL 1VG 12
1VG CAQ CAQ C 0 1 Y N N N N N 7.700 38.640 9.852 0.917 -1.074 0.002 CAQ 1VG 13
1VG CAP CAP C 0 1 Y N N N N N 7.768 38.710 8.465 2.290 -1.162 0.002 CAP 1VG 14
1VG CAM CAM C 0 1 Y N N N N N 6.066 36.875 9.656 1.074 1.342 -0.010 CAM 1VG 15
1VG CAN CAN C 0 1 Y N N N N N 6.132 36.955 8.266 2.447 1.252 -0.009 CAN 1VG 16
1VG CAO CAO C 0 1 Y N N N N N 6.959 37.904 7.674 3.065 -0.001 0.000 CAO 1VG 17
1VG CAR CAR C 0 1 Y N N N N N 7.102 37.890 6.367 4.541 -0.097 0.001 CAR 1VG 18
1VG NAV NAV N 0 1 Y N N N N N 8.300 37.587 5.837 5.280 -1.232 0.010 NAV 1VG 19
1VG NAU NAU N 0 1 Y N N N N N 8.175 37.564 4.733 6.520 -0.875 0.007 NAU 1VG 20
1VG NAT NAT N 0 1 Y N N N N N 6.847 37.792 4.429 6.588 0.410 -0.002 NAT 1VG 21
1VG NAS NAS N 0 1 Y N N N N N 6.214 37.969 5.404 5.399 0.906 -0.012 NAS 1VG 22
1VG H1 H1 H 0 1 N N N N N N 8.364 38.922 12.416 -1.134 2.396 0.009 H1 1VG 23
1VG H3 H3 H 0 1 N N N N N N 6.983 37.198 16.611 -5.868 1.317 0.003 H3 1VG 24
1VG H4 H4 H 0 1 N N N N N N 5.479 35.336 17.268 -7.104 -0.809 -0.003 H4 1VG 25
1VG H5 H5 H 0 1 N N N N N N 4.307 33.995 15.546 -5.890 -2.947 -0.008 H5 1VG 26
1VG H6 H6 H 0 1 N N N N N N 4.570 34.562 13.130 -3.437 -2.989 -0.006 H6 1VG 27
1VG H8 H8 H 0 1 N N N N N N 8.308 39.298 10.456 0.317 -1.972 0.004 H8 1VG 28
1VG H9 H9 H 0 1 N N N N N N 8.457 39.398 7.998 2.768 -2.131 0.005 H9 1VG 29
1VG H10 H10 H 0 1 N N N N N N 5.408 36.155 10.120 0.596 2.311 -0.017 H10 1VG 30
1VG H11 H11 H 0 1 N N N N N N 5.546 36.286 7.654 3.047 2.149 -0.016 H11 1VG 31
1VG H12 H12 H 0 1 N N N N N N 9.146 37.415 6.342 4.942 -2.141 0.017 H12 1VG 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1VG NAT NAU DOUB Y N 1
1VG NAT NAS SING Y N 2
1VG NAU NAV SING Y N 3
1VG NAS CAR DOUB Y N 4
1VG NAV CAR SING Y N 5
1VG CAR CAO SING N N 6
1VG CAO CAN DOUB Y N 7
1VG CAO CAP SING Y N 8
1VG CAN CAM SING Y N 9
1VG CAP CAQ DOUB Y N 10
1VG CAM CAL DOUB Y N 11
1VG CAQ CAL SING Y N 12
1VG CAL CAD SING N N 13
1VG CAD OAE SING N N 14
1VG CAD CAC DOUB N N 15
1VG OAE CAF SING N N 16
1VG CAC CAB SING N N 17
1VG CAF CAG DOUB Y N 18
1VG CAF CAK SING Y N 19
1VG CAG CAH SING Y N 20
1VG CAB CAK SING N N 21
1VG CAB OAA DOUB N N 22
1VG CAK CAJ DOUB Y N 23
1VG CAH CAI DOUB Y N 24
1VG CAJ CAI SING Y N 25
1VG CAC H1 SING N N 26
1VG CAJ H3 SING N N 27
1VG CAI H4 SING N N 28
1VG CAH H5 SING N N 29
1VG CAG H6 SING N N 30
1VG CAQ H8 SING N N 31
1VG CAP H9 SING N N 32
1VG CAM H10 SING N N 33
1VG CAN H11 SING N N 34
1VG NAV H12 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1VG SMILES ACDLabs 12.01 O=C1c4c(OC(=C1)c3ccc(c2nnnn2)cc3)cccc4
1VG InChI InChI 1.03 InChI=1S/C16H10N4O2/c21-13-9-15(22-14-4-2-1-3-12(13)14)10-5-7-11(8-6-10)16-17-19-20-18-16/h1-9H,(H,17,18,19,20)
1VG InChIKey InChI 1.03 CDSSKRNFCDQPBZ-UHFFFAOYSA-N
1VG SMILES_CANONICAL CACTVS 3.370 O=C1C=C(Oc2ccccc12)c3ccc(cc3)c4[nH]nnn4
1VG SMILES CACTVS 3.370 O=C1C=C(Oc2ccccc12)c3ccc(cc3)c4[nH]nnn4
1VG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)C(=O)C=C(O2)c3ccc(cc3)c4[nH]nnn4
1VG SMILES "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)C(=O)C=C(O2)c3ccc(cc3)c4[nH]nnn4
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1VG "SYSTEMATIC NAME" ACDLabs 12.01 2-[4-(1H-tetrazol-5-yl)phenyl]-4H-chromen-4-one
1VG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-[4-(1H-1,2,3,4-tetrazol-5-yl)phenyl]chromen-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1VG 'Create component' 2013-06-18 RCSB
1VG 'Initial release' 2013-10-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1VG CAC C 8.298 2.027 1
1VG CAB C 6.999 2.777 2
1VG OAA O 6.999 4.277 3
1VG CAK C 5.700 2.027 4
1VG CAJ C 4.359 2.829 5
1VG CAI C 3.000 2.058 6
1VG CAH C 3.000 0.496 7
1VG CAG C 4.359 -0.275 8
1VG CAF C 5.700 0.527 9
1VG OAE O 6.999 -0.223 10
1VG CAD C 8.298 0.527 11
1VG CAL C 9.597 -0.223 12
1VG CAQ C 10.896 0.527 13
1VG CAP C 12.195 -0.223 14
1VG CAM C 9.597 -1.723 15
1VG CAN C 10.896 -2.473 16
1VG CAO C 12.195 -1.723 17
1VG CAR C 13.494 -2.473 18
1VG NAV N 13.651 -3.965 19
1VG NAU N 15.118 -4.277 20
1VG NAT N 15.868 -2.978 21
1VG NAS N 14.865 -1.863 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1VG NAT NAU DOUBLE NONE 1
1VG NAT NAS SINGLE NONE 2
1VG NAU NAV SINGLE NONE 3
1VG NAS CAR DOUBLE NONE 4
1VG NAV CAR SINGLE NONE 5
1VG CAR CAO SINGLE NONE 6
1VG CAO CAN DOUBLE NONE 7
1VG CAO CAP SINGLE NONE 8
1VG CAN CAM SINGLE NONE 9
1VG CAP CAQ DOUBLE NONE 10
1VG CAM CAL DOUBLE NONE 11
1VG CAQ CAL SINGLE NONE 12
1VG CAL CAD SINGLE NONE 13
1VG CAD OAE SINGLE NONE 14
1VG CAD CAC DOUBLE NONE 15
1VG OAE CAF SINGLE NONE 16
1VG CAC CAB SINGLE NONE 17
1VG CAF CAG SINGLE NONE 18
1VG CAF CAK DOUBLE NONE 19
1VG CAG CAH DOUBLE NONE 20
1VG CAB CAK SINGLE NONE 21
1VG CAB OAA DOUBLE NONE 22
1VG CAK CAJ SINGLE NONE 23
1VG CAH CAI SINGLE NONE 24
1VG CAJ CAI DOUBLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1VG MurckoScaffold S1 scaffold 'O=c1cc(-c2ccc(-c3nnn[nH]3)cc2)oc2ccccc12' InChI=1S/C16H10N4O2/c21-13-9-15(22-14-4-2-1-3-12(13)14)10-5-7-11(8-6-10)16-17-19-20-18-16/h1-9H,(H,17,18,19,20) CDSSKRNFCDQPBZ-UHFFFAOYSA-N
1VG phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1VG CAC S1 1
1VG CAB S1 1
1VG OAA S1 1
1VG CAK S1 1
1VG CAJ S1 1
1VG CAI S1 1
1VG CAH S1 1
1VG CAG S1 1
1VG CAF S1 1
1VG OAE S1 1
1VG CAD S1 1
1VG CAL S1 1
1VG CAQ S1 1
1VG CAP S1 1
1VG CAM S1 1
1VG CAN S1 1
1VG CAO S1 1
1VG CAR S1 1
1VG NAV S1 1
1VG NAU S1 1
1VG NAT S1 1
1VG NAS S1 1
1VG CAK F1 1
1VG CAF F1 1
1VG CAG F1 1
1VG CAH F1 1
1VG CAI F1 1
1VG CAJ F1 1
1VG CAL F1 2
1VG CAM F1 2
1VG CAN F1 2
1VG CAO F1 2
1VG CAP F1 2
1VG CAQ F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 1VG
_pdbe_chem_comp_rdkit_properties.exactmw 290.080
_pdbe_chem_comp_rdkit_properties.amw 290.282
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 138.075
_pdbe_chem_comp_rdkit_properties.tpsa 84.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.352
_pdbe_chem_comp_rdkit_properties.CrippenMR 76.350
_pdbe_chem_comp_rdkit_properties.chi0v 10.605
_pdbe_chem_comp_rdkit_properties.chi1v 5.910
_pdbe_chem_comp_rdkit_properties.chi2v 2.706
_pdbe_chem_comp_rdkit_properties.chi3v 2.706
_pdbe_chem_comp_rdkit_properties.chi4v 1.727
_pdbe_chem_comp_rdkit_properties.chi0n 20.605
_pdbe_chem_comp_rdkit_properties.chi1n 10.857
_pdbe_chem_comp_rdkit_properties.chi2n 2.706
_pdbe_chem_comp_rdkit_properties.chi3n 2.706
_pdbe_chem_comp_rdkit_properties.chi4n 1.727
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.280
_pdbe_chem_comp_rdkit_properties.kappa1 5.842
_pdbe_chem_comp_rdkit_properties.kappa2 4.923
_pdbe_chem_comp_rdkit_properties.kappa3 2.066
_pdbe_chem_comp_rdkit_properties.Phi 1.307
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1VG UniChem ZINC ZINC000044602347
1VG UniChem eMolecules 29482118
1VG UniChem SureChEMBL SCHEMBL24046892
1VG UniChem PubChem 46742374
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1VG CAC -1.413 -0.760 1.485 ETKDGv3 1
1VG CAB -2.884 -0.760 1.517 ETKDGv3 2
1VG OAA -3.492 -1.260 2.501 ETKDGv3 3
1VG CAK -3.627 -0.170 0.391 ETKDGv3 4
1VG CAJ -5.111 -0.139 0.364 ETKDGv3 5
1VG CAI -5.749 0.406 -0.679 ETKDGv3 6
1VG CAH -4.979 0.977 -1.804 ETKDGv3 7
1VG CAG -3.641 0.951 -1.783 ETKDGv3 8
1VG CAF -2.929 0.350 -0.635 ETKDGv3 9
1VG OAE -1.526 0.327 -0.622 ETKDGv3 10
1VG CAD -0.768 -0.224 0.429 ETKDGv3 11
1VG CAL 0.723 -0.178 0.307 ETKDGv3 12
1VG CAQ 1.313 0.443 -0.910 ETKDGv3 13
1VG CAP 2.639 0.511 -1.073 ETKDGv3 14
1VG CAM 1.565 -0.671 1.242 ETKDGv3 15
1VG CAN 3.030 -0.594 1.059 ETKDGv3 16
1VG CAO 3.555 -0.032 -0.042 ETKDGv3 17
1VG CAR 5.020 0.054 -0.241 ETKDGv3 18
1VG NAV 6.012 -0.422 0.658 ETKDGv3 19
1VG NAU 7.211 -0.107 0.020 ETKDGv3 20
1VG NAT 6.961 0.467 -1.086 ETKDGv3 21
1VG NAS 5.577 0.583 -1.280 ETKDGv3 22
1VG H1 -0.897 -1.199 2.324 ETKDGv3 23
1VG H3 -5.683 -0.555 1.184 ETKDGv3 24
1VG H4 -6.831 0.430 -0.701 ETKDGv3 25
1VG H5 -5.501 1.417 -2.644 ETKDGv3 26
1VG H6 -3.077 1.369 -2.607 ETKDGv3 27
1VG H8 0.674 0.849 -1.683 ETKDGv3 28
1VG H9 3.037 0.969 -1.970 ETKDGv3 29
1VG H10 1.216 -1.135 2.150 ETKDGv3 30
1VG H11 3.660 -1.002 1.837 ETKDGv3 31
1VG H12 5.917 -0.897 1.582 ETKDGv3 32
#