data_1V1
#
_chem_comp.id 1V1
_chem_comp.name 2-(4-chlorophenyl)-4H-chromen-4-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H9 Cl O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-06-13
_chem_comp.pdbx_modified_date 2013-10-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 256.684
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1V1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4L0V
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1V1 CAB CAB C 0 1 N N N N N N -7.371 -38.005 12.910 -0.844 1.491 0.004 CAB 1V1 1
1V1 CAD CAD C 0 1 N N N N N N -7.357 -37.703 14.263 -2.250 1.639 0.004 CAD 1V1 2
1V1 OAH OAH O 0 1 N N N N N N -8.160 -38.275 14.995 -2.772 2.742 0.004 OAH 1V1 3
1V1 CAE CAE C 0 1 Y N N N N N -6.505 -36.692 14.717 -3.063 0.406 0.002 CAE 1V1 4
1V1 CAO CAO C 0 1 Y N N N N N -6.364 -36.424 16.048 -4.455 0.455 0.001 CAO 1V1 5
1V1 CAQ CAQ C 0 1 Y N N N N N -5.517 -35.371 16.447 -5.177 -0.719 -0.002 CAQ 1V1 6
1V1 CAR CAR C 0 1 Y N N N N N -4.808 -34.604 15.507 -4.523 -1.942 -0.003 CAR 1V1 7
1V1 CAP CAP C 0 1 Y N N N N N -4.958 -34.898 14.140 -3.146 -2.004 -0.002 CAP 1V1 8
1V1 CAF CAF C 0 1 Y N N N N N -5.807 -35.930 13.778 -2.400 -0.832 -0.000 CAF 1V1 9
1V1 OAC OAC O 0 1 N N N N N N -5.891 -36.224 12.452 -1.051 -0.870 0.001 OAC 1V1 10
1V1 CAA CAA C 0 1 N N N N N N -6.590 -37.327 12.022 -0.301 0.243 -0.004 CAA 1V1 11
1V1 CAG CAG C 0 1 Y N N N N N -6.580 -37.559 10.624 1.168 0.109 -0.002 CAG 1V1 12
1V1 CAI CAI C 0 1 Y N N N N N -5.856 -36.671 9.808 1.757 -1.158 0.004 CAI 1V1 13
1V1 CAM CAM C 0 1 Y N N N N N -5.838 -36.839 8.423 3.131 -1.277 0.005 CAM 1V1 14
1V1 CAK CAK C 0 1 Y N N N N N -6.506 -37.914 7.845 3.927 -0.143 0.001 CAK 1V1 15
1V1 CL1 CL1 CL 0 0 N N N N N N -6.461 -38.102 6.117 5.656 -0.301 0.002 CL1 1V1 16
1V1 CAL CAL C 0 1 Y N N N N N -7.229 -38.808 8.632 3.349 1.116 -0.005 CAL 1V1 17
1V1 CAJ CAJ C 0 1 Y N N N N N -7.272 -38.627 10.019 1.977 1.248 -0.012 CAJ 1V1 18
1V1 H1 H1 H 0 1 N N N N N N -8.015 -38.795 12.552 -0.205 2.362 0.005 H1 1V1 19
1V1 H2 H2 H 0 1 N N N N N N -6.894 -37.010 16.784 -4.965 1.407 0.002 H2 1V1 20
1V1 H3 H3 H 0 1 N N N N N N -5.410 -35.148 17.498 -6.257 -0.686 -0.003 H3 1V1 21
1V1 H4 H4 H 0 1 N N N N N N -4.159 -33.803 15.829 -5.099 -2.856 -0.004 H4 1V1 22
1V1 H5 H5 H 0 1 N N N N N N -4.424 -34.333 13.391 -2.647 -2.962 -0.002 H5 1V1 23
1V1 H6 H6 H 0 1 N N N N N N -5.311 -35.854 10.256 1.137 -2.043 0.007 H6 1V1 24
1V1 H7 H7 H 0 1 N N N N N N -5.306 -36.135 7.800 3.587 -2.256 0.009 H7 1V1 25
1V1 H8 H8 H 0 1 N N N N N N -7.752 -39.635 8.175 3.976 1.996 -0.008 H8 1V1 26
1V1 H9 H9 H 0 1 N N N N N N -7.840 -39.312 10.631 1.528 2.230 -0.017 H9 1V1 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1V1 CL1 CAK SING N N 1
1V1 CAK CAM DOUB Y N 2
1V1 CAK CAL SING Y N 3
1V1 CAM CAI SING Y N 4
1V1 CAL CAJ DOUB Y N 5
1V1 CAI CAG DOUB Y N 6
1V1 CAJ CAG SING Y N 7
1V1 CAG CAA SING N N 8
1V1 CAA OAC SING N N 9
1V1 CAA CAB DOUB N N 10
1V1 OAC CAF SING N N 11
1V1 CAB CAD SING N N 12
1V1 CAF CAP DOUB Y N 13
1V1 CAF CAE SING Y N 14
1V1 CAP CAR SING Y N 15
1V1 CAD CAE SING N N 16
1V1 CAD OAH DOUB N N 17
1V1 CAE CAO DOUB Y N 18
1V1 CAR CAQ DOUB Y N 19
1V1 CAO CAQ SING Y N 20
1V1 CAB H1 SING N N 21
1V1 CAO H2 SING N N 22
1V1 CAQ H3 SING N N 23
1V1 CAR H4 SING N N 24
1V1 CAP H5 SING N N 25
1V1 CAI H6 SING N N 26
1V1 CAM H7 SING N N 27
1V1 CAL H8 SING N N 28
1V1 CAJ H9 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1V1 SMILES ACDLabs 12.01 Clc3ccc(C=2Oc1ccccc1C(=O)C=2)cc3
1V1 InChI InChI 1.03 InChI=1S/C15H9ClO2/c16-11-7-5-10(6-8-11)15-9-13(17)12-3-1-2-4-14(12)18-15/h1-9H
1V1 InChIKey InChI 1.03 BUEVXCMRYKDSMY-UHFFFAOYSA-N
1V1 SMILES_CANONICAL CACTVS 3.370 Clc1ccc(cc1)C2=CC(=O)c3ccccc3O2
1V1 SMILES CACTVS 3.370 Clc1ccc(cc1)C2=CC(=O)c3ccccc3O2
1V1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)C(=O)C=C(O2)c3ccc(cc3)Cl
1V1 SMILES "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)C(=O)C=C(O2)c3ccc(cc3)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1V1 "SYSTEMATIC NAME" ACDLabs 12.01 2-(4-chlorophenyl)-4H-chromen-4-one
1V1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-(4-chlorophenyl)chromen-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1V1 'Create component' 2013-06-13 RCSB
1V1 'Initial release' 2013-10-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1V1 CAB C 8.298 1.125 1
1V1 CAD C 6.999 1.875 2
1V1 OAH O 6.999 3.375 3
1V1 CAE C 5.700 1.125 4
1V1 CAO C 4.359 1.927 5
1V1 CAQ C 3.000 1.156 6
1V1 CAR C 3.000 -0.406 7
1V1 CAP C 4.359 -1.177 8
1V1 CAF C 5.700 -0.375 9
1V1 OAC O 6.999 -1.125 10
1V1 CAA C 8.298 -0.375 11
1V1 CAG C 9.597 -1.125 12
1V1 CAI C 9.597 -2.625 13
1V1 CAM C 10.896 -3.375 14
1V1 CAK C 12.195 -2.625 15
1V1 CL1 Cl 13.494 -3.375 16
1V1 CAL C 12.195 -1.125 17
1V1 CAJ C 10.896 -0.375 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1V1 CL1 CAK SINGLE NONE 1
1V1 CAK CAM SINGLE NONE 2
1V1 CAK CAL DOUBLE NONE 3
1V1 CAM CAI DOUBLE NONE 4
1V1 CAL CAJ SINGLE NONE 5
1V1 CAI CAG SINGLE NONE 6
1V1 CAJ CAG DOUBLE NONE 7
1V1 CAG CAA SINGLE NONE 8
1V1 CAA OAC SINGLE NONE 9
1V1 CAA CAB DOUBLE NONE 10
1V1 OAC CAF SINGLE NONE 11
1V1 CAB CAD SINGLE NONE 12
1V1 CAF CAP SINGLE NONE 13
1V1 CAF CAE DOUBLE NONE 14
1V1 CAP CAR DOUBLE NONE 15
1V1 CAD CAE SINGLE NONE 16
1V1 CAD OAH DOUBLE NONE 17
1V1 CAE CAO SINGLE NONE 18
1V1 CAR CAQ SINGLE NONE 19
1V1 CAO CAQ DOUBLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1V1 MurckoScaffold S1 scaffold O=c1cc(-c2ccccc2)oc2ccccc12 InChI=1S/C15H10O2/c16-13-10-15(11-6-2-1-3-7-11)17-14-9-5-4-8-12(13)14/h1-10H VHBFFQKBGNRLFZ-UHFFFAOYSA-N
1V1 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1V1 CAB S1 1
1V1 CAD S1 1
1V1 OAH S1 1
1V1 CAE S1 1
1V1 CAO S1 1
1V1 CAQ S1 1
1V1 CAR S1 1
1V1 CAP S1 1
1V1 CAF S1 1
1V1 OAC S1 1
1V1 CAA S1 1
1V1 CAG S1 1
1V1 CAI S1 1
1V1 CAM S1 1
1V1 CAK S1 1
1V1 CAL S1 1
1V1 CAJ S1 1
1V1 CAE F1 1
1V1 CAF F1 1
1V1 CAP F1 1
1V1 CAR F1 1
1V1 CAQ F1 1
1V1 CAO F1 1
1V1 CAG F1 2
1V1 CAI F1 2
1V1 CAM F1 2
1V1 CAK F1 2
1V1 CAL F1 2
1V1 CAJ F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 1V1
_pdbe_chem_comp_rdkit_properties.exactmw 256.029
_pdbe_chem_comp_rdkit_properties.amw 256.688
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 121.085
_pdbe_chem_comp_rdkit_properties.tpsa 30.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.205
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.510
_pdbe_chem_comp_rdkit_properties.chi0v 9.450
_pdbe_chem_comp_rdkit_properties.chi1v 5.179
_pdbe_chem_comp_rdkit_properties.chi2v 2.322
_pdbe_chem_comp_rdkit_properties.chi3v 2.322
_pdbe_chem_comp_rdkit_properties.chi4v 1.449
_pdbe_chem_comp_rdkit_properties.chi0n 17.694
_pdbe_chem_comp_rdkit_properties.chi1n 9.301
_pdbe_chem_comp_rdkit_properties.chi2n 2.133
_pdbe_chem_comp_rdkit_properties.chi3n 2.133
_pdbe_chem_comp_rdkit_properties.chi4n 1.355
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.060
_pdbe_chem_comp_rdkit_properties.kappa1 4.902
_pdbe_chem_comp_rdkit_properties.kappa2 4.315
_pdbe_chem_comp_rdkit_properties.kappa3 1.912
_pdbe_chem_comp_rdkit_properties.Phi 1.175
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1V1 UniChem ZINC ZINC000000058091
1V1 UniChem eMolecules 1099736
1V1 UniChem SureChEMBL SCHEMBL4650655
1V1 UniChem ACTor 10420-75-4
1V1 UniChem BindingDb 150757
1V1 UniChem 'EPA CompTox Dashboard' DTXSID90146345
1V1 UniChem BRENDA 238147
1V1 UniChem CCDC OCERIZ
1V1 UniChem Nikkaji J435.645D
1V1 UniChem 'PubChem TPHARMA' 14847904
1V1 UniChem PubChem 151515
1V1 UniChem Mcule MCULE-1580024470
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1V1 CAB 0.114 1.612 -0.471 ETKDGv3 1
1V1 CAD -1.314 1.960 -0.494 ETKDGv3 2
1V1 OAH -1.673 3.128 -0.802 ETKDGv3 3
1V1 CAE -2.309 0.928 -0.151 ETKDGv3 4
1V1 CAO -3.765 1.214 -0.156 ETKDGv3 5
1V1 CAQ -4.637 0.250 0.165 ETKDGv3 6
1V1 CAR -4.153 -1.099 0.526 ETKDGv3 7
1V1 CAP -2.840 -1.361 0.532 ETKDGv3 8
1V1 CAF -1.871 -0.303 0.178 ETKDGv3 9
1V1 OAC -0.497 -0.589 0.188 ETKDGv3 10
1V1 CAA 0.487 0.362 -0.143 ETKDGv3 11
1V1 CAG 1.912 -0.055 -0.094 ETKDGv3 12
1V1 CAI 2.300 -1.173 0.805 ETKDGv3 13
1V1 CAM 3.571 -1.590 0.862 ETKDGv3 14
1V1 CAK 4.601 -0.946 0.023 ETKDGv3 15
1V1 CL1 6.264 -1.498 0.105 ETKDGv3 16
1V1 CAL 4.262 0.055 -0.798 ETKDGv3 17
1V1 CAJ 2.859 0.517 -0.867 ETKDGv3 18
1V1 H1 0.841 2.383 -0.691 ETKDGv3 19
1V1 H2 -4.129 2.199 -0.419 ETKDGv3 20
1V1 H3 -5.700 0.456 0.161 ETKDGv3 21
1V1 H4 -4.863 -1.874 0.784 ETKDGv3 22
1V1 H5 -2.486 -2.350 0.796 ETKDGv3 23
1V1 H6 1.557 -1.654 1.429 ETKDGv3 24
1V1 H7 3.844 -2.402 1.524 ETKDGv3 25
1V1 H8 5.009 0.530 -1.421 ETKDGv3 26
1V1 H9 2.617 1.301 -1.571 ETKDGv3 27
#