data_1TU
#
_chem_comp.id 1TU
_chem_comp.name 4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H12 F2 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-05-30
_chem_comp.pdbx_modified_date 2014-06-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 254.233
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1TU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4KZD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1TU C1 C1 C 0 1 Y N N N N N -44.513 32.076 35.984 1.316 1.166 0.581 C1 1TU 1
1TU C2 C2 C 0 1 Y N N N N N -43.553 33.080 36.113 0.781 -0.022 1.043 C2 1TU 2
1TU C3 C3 C 0 1 Y N N N N N -42.315 32.834 36.703 1.423 -1.219 0.785 C3 1TU 3
1TU C4 C4 C 0 1 Y N N N N N -41.978 31.583 37.188 2.603 -1.232 0.063 C4 1TU 4
1TU C5 C5 C 0 1 Y N N N N N -42.962 30.489 37.080 3.143 -0.040 -0.402 C5 1TU 5
1TU C6 C6 C 0 1 Y N N N N N -44.274 30.789 36.447 2.497 1.160 -0.141 C6 1TU 6
1TU C10 C10 C 0 1 N N N N N N -43.892 34.429 35.596 -0.505 -0.012 1.830 C10 1TU 7
1TU C11 C11 C 0 1 Y N N N N N -43.014 35.631 35.632 -1.672 -0.145 0.886 C11 1TU 8
1TU C13 C13 C 0 1 Y N N N N N -41.301 36.953 35.975 -3.221 -1.035 -0.327 C13 1TU 9
1TU O18 O18 O 0 1 N N N N N N -44.372 37.377 34.577 -2.069 2.201 0.432 O18 1TU 10
1TU C15 C15 C 0 1 Y N N N N N -43.283 36.986 35.140 -2.332 0.875 0.292 C15 1TU 11
1TU N14 N14 N 0 1 Y N N N N N -42.223 37.753 35.368 -3.315 0.314 -0.478 N14 1TU 12
1TU C16 C16 C 0 1 N N N N N N -42.085 39.192 35.028 -4.286 1.031 -1.309 C16 1TU 13
1TU C17 C17 C 0 1 N N N N N N -39.937 37.424 36.414 -4.104 -2.058 -0.994 C17 1TU 14
1TU N12 N12 N 0 1 Y N N N N N -41.765 35.666 36.140 -2.234 -1.296 0.484 N12 1TU 15
1TU F8 F8 F 0 1 N N N N N N -45.221 29.841 36.319 3.019 2.322 -0.592 F8 1TU 16
1TU O9 O9 O 0 1 N N N N N N -42.654 29.284 37.541 4.303 -0.049 -1.112 O9 1TU 17
1TU F7 F7 F 0 1 N N N N N N -40.776 31.365 37.747 3.230 -2.402 -0.188 F7 1TU 18
1TU H1 H1 H 0 1 N N N N N N -45.459 32.304 35.516 0.810 2.099 0.781 H1 1TU 19
1TU H2 H2 H 0 1 N N N N N N -41.601 33.640 36.784 1.002 -2.146 1.147 H2 1TU 20
1TU H3 H3 H 0 1 N N N N N N -44.804 34.723 36.136 -0.508 -0.847 2.531 H3 1TU 21
1TU H4 H4 H 0 1 N N N N N N -44.129 34.278 34.532 -0.587 0.925 2.380 H4 1TU 22
1TU H6 H6 H 0 1 N N N N N N -41.093 39.550 35.341 -3.878 1.166 -2.311 H6 1TU 23
1TU H7 H7 H 0 1 N N N N N N -42.197 39.324 33.942 -5.210 0.456 -1.367 H7 1TU 24
1TU H8 H8 H 0 1 N N N N N N -42.864 39.768 35.549 -4.492 2.006 -0.867 H8 1TU 25
1TU H9 H9 H 0 1 N N N N N N -39.391 36.588 36.876 -4.963 -2.267 -0.357 H9 1TU 26
1TU H10 H10 H 0 1 N N N N N N -39.377 37.790 35.541 -4.449 -1.670 -1.953 H10 1TU 27
1TU H11 H11 H 0 1 N N N N N N -40.048 38.238 37.146 -3.539 -2.976 -1.155 H11 1TU 28
1TU H12 H12 H 0 1 N N N N N N -41.777 29.298 37.905 4.179 -0.136 -2.067 H12 1TU 29
1TU H5 H5 H 0 1 N N N N N N -44.981 36.650 34.526 -2.551 2.623 1.157 H5 1TU 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1TU O18 C15 SING N N 1
1TU C16 N14 SING N N 2
1TU C15 N14 SING Y N 3
1TU C15 C11 DOUB Y N 4
1TU N14 C13 SING Y N 5
1TU C10 C11 SING N N 6
1TU C10 C2 SING N N 7
1TU C11 N12 SING Y N 8
1TU C13 N12 DOUB Y N 9
1TU C13 C17 SING N N 10
1TU C1 C2 DOUB Y N 11
1TU C1 C6 SING Y N 12
1TU C2 C3 SING Y N 13
1TU F8 C6 SING N N 14
1TU C6 C5 DOUB Y N 15
1TU C3 C4 DOUB Y N 16
1TU C5 C4 SING Y N 17
1TU C5 O9 SING N N 18
1TU C4 F7 SING N N 19
1TU C1 H1 SING N N 20
1TU C3 H2 SING N N 21
1TU C10 H3 SING N N 22
1TU C10 H4 SING N N 23
1TU C16 H6 SING N N 24
1TU C16 H7 SING N N 25
1TU C16 H8 SING N N 26
1TU C17 H9 SING N N 27
1TU C17 H10 SING N N 28
1TU C17 H11 SING N N 29
1TU O9 H12 SING N N 30
1TU O18 H5 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1TU SMILES ACDLabs 12.01 Fc1cc(cc(F)c1O)Cc2nc(n(c2O)C)C
1TU InChI InChI 1.03 InChI=1S/C12H12F2N2O2/c1-6-15-10(12(18)16(6)2)5-7-3-8(13)11(17)9(14)4-7/h3-4,17-18H,5H2,1-2H3
1TU InChIKey InChI 1.03 MSZRPLCUVKFQJC-UHFFFAOYSA-N
1TU SMILES_CANONICAL CACTVS 3.370 Cn1c(C)nc(Cc2cc(F)c(O)c(F)c2)c1O
1TU SMILES CACTVS 3.370 Cn1c(C)nc(Cc2cc(F)c(O)c(F)c2)c1O
1TU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1nc(c(n1C)O)Cc2cc(c(c(c2)F)O)F
1TU SMILES "OpenEye OEToolkits" 1.7.6 Cc1nc(c(n1C)O)Cc2cc(c(c(c2)F)O)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1TU "SYSTEMATIC NAME" ACDLabs 12.01 4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol
1TU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 5-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methyl]-2,3-dimethyl-imidazol-4-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1TU 'Create component' 2013-05-30 RCSB
1TU 'Initial release' 2014-06-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1TU C1 C 4.299 -1.095 1
1TU C2 C 5.598 -0.345 2
1TU C3 C 6.897 -1.095 3
1TU C4 C 6.897 -2.595 4
1TU C5 C 5.598 -3.345 5
1TU C6 C 4.299 -2.595 6
1TU C10 C 5.598 1.155 7
1TU C11 C 6.897 1.905 8
1TU C13 C 9.271 2.410 9
1TU O18 O 5.939 4.400 10
1TU C15 C 7.054 3.397 11
1TU N14 N 8.521 3.709 12
1TU C16 C 9.131 5.079 13
1TU C17 C 10.763 2.253 14
1TU N12 N 8.267 1.295 15
1TU F8 F 3.000 -3.345 16
1TU O9 O 5.598 -4.845 17
1TU F7 F 8.196 -3.345 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1TU O18 C15 SINGLE NONE 1
1TU C16 N14 SINGLE NONE 2
1TU C15 N14 SINGLE NONE 3
1TU C15 C11 DOUBLE NONE 4
1TU N14 C13 SINGLE NONE 5
1TU C10 C11 SINGLE NONE 6
1TU C10 C2 SINGLE NONE 7
1TU C11 N12 SINGLE NONE 8
1TU C13 N12 DOUBLE NONE 9
1TU C13 C17 SINGLE NONE 10
1TU C1 C2 DOUBLE NONE 11
1TU C1 C6 SINGLE NONE 12
1TU C2 C3 SINGLE NONE 13
1TU F8 C6 SINGLE NONE 14
1TU C6 C5 DOUBLE NONE 15
1TU C3 C4 DOUBLE NONE 16
1TU C5 C4 SINGLE NONE 17
1TU C5 O9 SINGLE NONE 18
1TU C4 F7 SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1TU MurckoScaffold S1 scaffold 'c1ccc(Cc2c[nH]cn2)cc1' InChI=1S/C10H10N2/c1-2-4-9(5-3-1)6-10-7-11-8-12-10/h1-5,7-8H,6H2,(H,11,12) HREUGOAZLRNTEM-UHFFFAOYSA-N
1TU imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
1TU phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1TU C1 S1 1
1TU C2 S1 1
1TU C3 S1 1
1TU C4 S1 1
1TU C5 S1 1
1TU C6 S1 1
1TU C10 S1 1
1TU C11 S1 1
1TU C13 S1 1
1TU C15 S1 1
1TU N14 S1 1
1TU N12 S1 1
1TU C11 F1 1
1TU C15 F1 1
1TU N14 F1 1
1TU C13 F1 1
1TU N12 F1 1
1TU C1 F2 1
1TU C2 F2 1
1TU C3 F2 1
1TU C4 F2 1
1TU C5 F2 1
1TU C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1TU
_pdbe_chem_comp_rdkit_properties.exactmw 254.087
_pdbe_chem_comp_rdkit_properties.amw 254.236
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 119.175
_pdbe_chem_comp_rdkit_properties.tpsa 58.280
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.920
_pdbe_chem_comp_rdkit_properties.CrippenMR 58.421
_pdbe_chem_comp_rdkit_properties.chi0v 8.467
_pdbe_chem_comp_rdkit_properties.chi1v 4.404
_pdbe_chem_comp_rdkit_properties.chi2v 1.947
_pdbe_chem_comp_rdkit_properties.chi3v 1.947
_pdbe_chem_comp_rdkit_properties.chi4v 1.129
_pdbe_chem_comp_rdkit_properties.chi0n 20.467
_pdbe_chem_comp_rdkit_properties.chi1n 10.221
_pdbe_chem_comp_rdkit_properties.chi2n 1.947
_pdbe_chem_comp_rdkit_properties.chi3n 1.947
_pdbe_chem_comp_rdkit_properties.chi4n 1.129
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.110
_pdbe_chem_comp_rdkit_properties.kappa1 4.221
_pdbe_chem_comp_rdkit_properties.kappa2 4.286
_pdbe_chem_comp_rdkit_properties.kappa3 2.009
_pdbe_chem_comp_rdkit_properties.Phi 1.005
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1TU UniChem ZINC ZINC000098208026
1TU UniChem PubChem 131633007
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1TU C1 1.870 1.413 0.096 ETKDGv3 1
1TU C2 1.515 0.600 -0.915 ETKDGv3 2
1TU C3 2.332 -0.605 -1.199 ETKDGv3 3
1TU C4 3.413 -0.880 -0.458 ETKDGv3 4
1TU C5 3.801 0.022 0.654 ETKDGv3 5
1TU C6 3.065 1.112 0.913 ETKDGv3 6
1TU C10 0.282 0.887 -1.729 ETKDGv3 7
1TU C11 -0.953 0.526 -0.956 ETKDGv3 8
1TU C13 -2.556 0.740 0.485 ETKDGv3 9
1TU O18 -1.102 -1.838 -1.508 ETKDGv3 10
1TU C15 -1.513 -0.674 -0.861 ETKDGv3 11
1TU N14 -2.609 -0.616 0.038 ETKDGv3 12
1TU C16 -3.151 -1.747 0.780 ETKDGv3 13
1TU C17 -3.448 1.302 1.545 ETKDGv3 14
1TU N12 -1.611 1.431 -0.072 ETKDGv3 15
1TU F8 3.408 1.944 1.928 ETKDGv3 16
1TU O9 4.924 -0.254 1.431 ETKDGv3 17
1TU F7 4.152 -1.984 -0.730 ETKDGv3 18
1TU H1 1.282 2.293 0.329 ETKDGv3 19
1TU H2 2.061 -1.266 -2.012 ETKDGv3 20
1TU H3 0.246 1.969 -1.982 ETKDGv3 21
1TU H4 0.308 0.337 -2.693 ETKDGv3 22
1TU H6 -3.246 -2.627 0.111 ETKDGv3 23
1TU H7 -4.156 -1.494 1.177 ETKDGv3 24
1TU H8 -2.474 -1.997 1.624 ETKDGv3 25
1TU H9 -3.169 0.872 2.529 ETKDGv3 26
1TU H10 -3.348 2.408 1.589 ETKDGv3 27
1TU H11 -4.504 1.047 1.318 ETKDGv3 28
1TU H12 5.499 -1.070 1.258 ETKDGv3 29
1TU H5 -0.318 -1.850 -2.146 ETKDGv3 30
#