data_1SI
#
_chem_comp.id 1SI
_chem_comp.name 3-fluoranyl-~{N}-[(~{E})-(5-pyridin-2-ylsulfanylfuran-2-yl)methylideneamino]benzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H12 F N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-07-06
_chem_comp.pdbx_modified_date 2021-12-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 341.359
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1SI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7F8H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1SI N1 N1 N 0 1 N N N N N N 5.630 -14.958 -23.772 1.943 0.756 -0.005 N1 1SI 1
1SI N3 N2 N 0 1 Y N N N N N 10.019 -14.872 -29.088 -3.092 -1.052 0.001 N3 1SI 2
1SI C4 C1 C 0 1 Y N N N N N 5.078 -13.440 -19.275 6.162 0.397 0.000 C4 1SI 3
1SI C5 C2 C 0 1 Y N N N N N 4.177 -14.439 -19.001 6.736 -0.864 0.002 C5 1SI 4
1SI C6 C3 C 0 1 Y N N N N N 3.831 -15.298 -20.024 5.938 -1.993 0.002 C6 1SI 5
1SI C7 C4 C 0 1 Y N N N N N 4.381 -15.150 -21.283 4.563 -1.872 0.000 C7 1SI 6
1SI C8 C5 C 0 1 N N N N N N 5.994 -15.911 -25.776 0.003 2.070 -0.002 C8 1SI 7
1SI C10 C6 C 0 1 Y N N N N N 6.577 -17.014 -27.986 -2.149 3.381 0.002 C10 1SI 8
1SI C13 C7 C 0 1 Y N N N N N 9.540 -14.105 -30.061 -4.406 -0.884 -0.000 C13 1SI 9
1SI C15 C8 C 0 1 Y N N N N N 12.226 -14.443 -29.917 -3.338 -3.388 0.001 C15 1SI 10
1SI C17 C9 C 0 1 Y N N N N N 10.351 -13.479 -30.995 -5.261 -1.982 -0.001 C17 1SI 11
1SI C1 C10 C 0 1 N N N N N N 5.883 -13.967 -22.891 2.506 -0.468 -0.003 C1 1SI 12
1SI C11 C11 C 0 1 Y N N N N N 7.072 -16.501 -29.203 -3.512 3.047 0.000 C11 1SI 13
1SI C12 C12 C 0 1 Y N N N N N 7.220 -15.142 -29.021 -3.590 1.690 0.000 C12 1SI 14
1SI C14 C13 C 0 1 Y N N N N N 11.351 -15.027 -29.033 -2.549 -2.254 0.002 C14 1SI 15
1SI C16 C14 C 0 1 Y N N N N N 11.709 -13.654 -30.917 -4.720 -3.255 0.000 C16 1SI 16
1SI C2 C15 C 0 1 Y N N N N N 5.292 -14.130 -21.531 3.977 -0.605 -0.002 C2 1SI 17
1SI C3 C16 C 0 1 Y N N N N N 5.644 -13.256 -20.509 4.787 0.533 0.004 C3 1SI 18
1SI C9 C17 C 0 1 Y N N N N N 6.444 -15.968 -27.134 -1.453 2.205 0.003 C9 1SI 19
1SI F1 F1 F 0 1 N N N N N N 5.423 -12.589 -18.274 6.948 1.496 0.000 F1 1SI 20
1SI N2 N3 N 0 1 N N N N N N 6.099 -14.851 -25.070 0.548 0.886 -0.000 N2 1SI 21
1SI O1 O1 O 0 1 N N N N N N 6.572 -12.991 -23.178 1.803 -1.461 -0.003 O1 1SI 22
1SI O2 O2 O 0 1 Y N N N N N 6.840 -14.806 -27.750 -2.343 1.189 0.002 O2 1SI 23
1SI S1 S1 S 0 1 N N N N N N 7.785 -13.904 -30.127 -5.078 0.745 -0.001 S1 1SI 24
1SI H1 H1 H 0 1 N N N N N N 5.108 -15.763 -23.489 2.503 1.548 -0.005 H1 1SI 25
1SI H2 H2 H 0 1 N N N N N N 3.752 -14.549 -18.014 7.811 -0.965 0.002 H2 1SI 26
1SI H3 H3 H 0 1 N N N N N N 3.124 -16.093 -19.839 6.391 -2.974 0.002 H3 1SI 27
1SI H4 H4 H 0 1 N N N N N N 4.102 -15.828 -22.076 3.942 -2.755 -0.000 H4 1SI 28
1SI H5 H5 H 0 1 N N N N N N 5.552 -16.792 -25.334 0.627 2.951 -0.006 H5 1SI 29
1SI H6 H6 H 0 1 N N N N N N 6.347 -18.047 -27.773 -1.730 4.377 -0.002 H6 1SI 30
1SI H7 H7 H 0 1 N N N N N N 13.291 -14.600 -29.829 -2.884 -4.368 0.001 H7 1SI 31
1SI H8 H8 H 0 1 N N N N N N 9.921 -12.864 -31.771 -6.332 -1.842 -0.001 H8 1SI 32
1SI H9 H9 H 0 1 N N N N N N 7.292 -17.061 -30.100 -4.342 3.739 -0.000 H9 1SI 33
1SI H10 H10 H 0 1 N N N N N N 11.759 -15.647 -28.248 -1.474 -2.353 0.003 H10 1SI 34
1SI H11 H11 H 0 1 N N N N N N 12.364 -13.178 -31.632 -5.359 -4.126 -0.001 H11 1SI 35
1SI H12 H12 H 0 1 N N N N N N 6.345 -12.453 -20.683 4.339 1.516 0.008 H12 1SI 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1SI C17 C16 DOUB Y N 1
1SI C17 C13 SING Y N 2
1SI C16 C15 SING Y N 3
1SI S1 C13 SING N N 4
1SI S1 C12 SING N N 5
1SI C13 N3 DOUB Y N 6
1SI C15 C14 DOUB Y N 7
1SI C11 C12 DOUB Y N 8
1SI C11 C10 SING Y N 9
1SI N3 C14 SING Y N 10
1SI C12 O2 SING Y N 11
1SI C10 C9 DOUB Y N 12
1SI O2 C9 SING Y N 13
1SI C9 C8 SING N N 14
1SI C8 N2 DOUB N E 15
1SI N2 N1 SING N N 16
1SI N1 C1 SING N N 17
1SI O1 C1 DOUB N N 18
1SI C1 C2 SING N N 19
1SI C2 C7 DOUB Y N 20
1SI C2 C3 SING Y N 21
1SI C7 C6 SING Y N 22
1SI C3 C4 DOUB Y N 23
1SI C6 C5 DOUB Y N 24
1SI C4 C5 SING Y N 25
1SI C4 F1 SING N N 26
1SI N1 H1 SING N N 27
1SI C5 H2 SING N N 28
1SI C6 H3 SING N N 29
1SI C7 H4 SING N N 30
1SI C8 H5 SING N N 31
1SI C10 H6 SING N N 32
1SI C15 H7 SING N N 33
1SI C17 H8 SING N N 34
1SI C11 H9 SING N N 35
1SI C14 H10 SING N N 36
1SI C16 H11 SING N N 37
1SI C3 H12 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1SI InChI InChI 1.03 InChI=1S/C17H12FN3O2S/c18-13-5-3-4-12(10-13)17(22)21-20-11-14-7-8-16(23-14)24-15-6-1-2-9-19-15/h1-11H,(H,21,22)/b20-11+
1SI InChIKey InChI 1.03 VDKNIVFIPSLUFD-RGVLZGJSSA-N
1SI SMILES_CANONICAL CACTVS 3.385 Fc1cccc(c1)C(=O)N/N=C/c2oc(Sc3ccccn3)cc2
1SI SMILES CACTVS 3.385 Fc1cccc(c1)C(=O)NN=Cc2oc(Sc3ccccn3)cc2
1SI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccnc(c1)Sc2ccc(o2)/C=N/NC(=O)c3cccc(c3)F
1SI SMILES "OpenEye OEToolkits" 2.0.7 c1ccnc(c1)Sc2ccc(o2)C=NNC(=O)c3cccc(c3)F
#
_pdbx_chem_comp_identifier.comp_id 1SI
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
3-fluoranyl-~{N}-[(~{E})-(5-pyridin-2-ylsulfanylfuran-2-yl)methylideneamino]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1SI 'Create component' 2021-07-06 PDBJ
1SI 'Initial release' 2021-12-29 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1SI N1 N 6.897 -3.066 1
1SI N3 N 8.666 5.732 2
1SI C4 C 4.299 -7.566 3
1SI C5 C 5.598 -8.316 4
1SI C6 C 6.897 -7.566 5
1SI C7 C 6.897 -6.066 6
1SI C8 C 8.196 -0.816 7
1SI C10 C 9.410 1.565 8
1SI C13 C 7.175 5.576 9
1SI C15 C 8.395 8.316 10
1SI C17 C 6.293 6.789 11
1SI C1 C 5.598 -3.816 12
1SI C11 C 8.946 2.992 13
1SI C12 C 7.446 2.992 14
1SI C14 C 9.277 7.103 15
1SI C16 C 6.903 8.159 16
1SI C2 C 5.598 -5.316 17
1SI C3 C 4.299 -6.066 18
1SI C9 C 8.196 0.684 19
1SI F1 F 3.000 -8.316 20
1SI N2 N 6.897 -1.566 21
1SI O1 O 4.299 -3.066 22
1SI O2 O 6.983 1.565 23
1SI S1 S 6.564 4.205 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1SI C17 C16 DOUBLE NONE 1
1SI C17 C13 SINGLE NONE 2
1SI C16 C15 SINGLE NONE 3
1SI S1 C13 SINGLE NONE 4
1SI S1 C12 SINGLE NONE 5
1SI C13 N3 DOUBLE NONE 6
1SI C15 C14 DOUBLE NONE 7
1SI C11 C12 DOUBLE NONE 8
1SI C11 C10 SINGLE NONE 9
1SI N3 C14 SINGLE NONE 10
1SI C12 O2 SINGLE NONE 11
1SI C10 C9 DOUBLE NONE 12
1SI O2 C9 SINGLE NONE 13
1SI C9 C8 SINGLE ENDUPRIGHT 14
1SI C8 N2 DOUBLE NONE 15
1SI N2 N1 SINGLE ENDUPRIGHT 16
1SI N1 C1 SINGLE NONE 17
1SI O1 C1 DOUBLE NONE 18
1SI C1 C2 SINGLE NONE 19
1SI C2 C7 DOUBLE NONE 20
1SI C2 C3 SINGLE NONE 21
1SI C7 C6 SINGLE NONE 22
1SI C3 C4 DOUBLE NONE 23
1SI C6 C5 DOUBLE NONE 24
1SI C4 C5 SINGLE NONE 25
1SI C4 F1 SINGLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1SI MurckoScaffold S1 scaffold O=C(N/N=C/c1ccc(Sc2ccccn2)o1)c1ccccc1 InChI=1S/C17H13N3O2S/c21-17(13-6-2-1-3-7-13)20-19-12-14-9-10-16(22-14)23-15-8-4-5-11-18-15/h1-12H,(H,20,21)/b19-12+ GXGIEUFHYHBKET-XDHOZWIPSA-N
1SI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1SI furan F2 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
1SI phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
1SI pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1SI N1 S1 1
1SI N3 S1 1
1SI C4 S1 1
1SI C5 S1 1
1SI C6 S1 1
1SI C7 S1 1
1SI C8 S1 1
1SI C10 S1 1
1SI C13 S1 1
1SI C15 S1 1
1SI C17 S1 1
1SI C1 S1 1
1SI C11 S1 1
1SI C12 S1 1
1SI C14 S1 1
1SI C16 S1 1
1SI C2 S1 1
1SI C3 S1 1
1SI C9 S1 1
1SI N2 S1 1
1SI O1 S1 1
1SI O2 S1 1
1SI S1 S1 1
1SI N1 F1 1
1SI C1 F1 1
1SI O1 F1 1
1SI C2 F1 1
1SI C12 F2 1
1SI C11 F2 1
1SI C10 F2 1
1SI C9 F2 1
1SI O2 F2 1
1SI C4 F3 1
1SI C3 F3 1
1SI C2 F3 1
1SI C7 F3 1
1SI C6 F3 1
1SI C5 F3 1
1SI C13 F4 1
1SI C17 F4 1
1SI C16 F4 1
1SI C15 F4 1
1SI C14 F4 1
1SI N3 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1SI
_pdbe_chem_comp_rdkit_properties.exactmw 341.063
_pdbe_chem_comp_rdkit_properties.amw 341.367
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 158.073
_pdbe_chem_comp_rdkit_properties.tpsa 67.490
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.403
_pdbe_chem_comp_rdkit_properties.CrippenMR 89.136
_pdbe_chem_comp_rdkit_properties.chi0v 12.261
_pdbe_chem_comp_rdkit_properties.chi1v 6.871
_pdbe_chem_comp_rdkit_properties.chi2v 2.966
_pdbe_chem_comp_rdkit_properties.chi3v 2.966
_pdbe_chem_comp_rdkit_properties.chi4v 1.894
_pdbe_chem_comp_rdkit_properties.chi0n 23.444
_pdbe_chem_comp_rdkit_properties.chi1n 12.001
_pdbe_chem_comp_rdkit_properties.chi2n 2.208
_pdbe_chem_comp_rdkit_properties.chi3n 2.208
_pdbe_chem_comp_rdkit_properties.chi4n 1.298
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.930
_pdbe_chem_comp_rdkit_properties.kappa1 6.901
_pdbe_chem_comp_rdkit_properties.kappa2 7.561
_pdbe_chem_comp_rdkit_properties.kappa3 4.296
_pdbe_chem_comp_rdkit_properties.Phi 2.174
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1SI UniChem SureChEMBL SCHEMBL11319180
1SI UniChem PubChem 7285259
1SI UniChem BindingDb 231625
1SI UniChem MedChemExpress HY-133511
1SI UniChem 'Probes And Drugs' PD157476
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1SI N1 -2.230 0.060 -0.838 ETKDGv3 1
1SI N3 4.702 1.097 -1.225 ETKDGv3 2
1SI C4 -6.308 1.631 -0.483 ETKDGv3 3
1SI C5 -7.081 1.216 0.703 ETKDGv3 4
1SI C6 -6.477 0.556 1.697 ETKDGv3 5
1SI C7 -5.039 0.231 1.604 ETKDGv3 6
1SI C8 -0.375 -1.302 -0.213 ETKDGv3 7
1SI C10 1.661 -2.623 0.289 ETKDGv3 8
1SI C13 5.084 -0.136 -1.044 ETKDGv3 9
1SI C15 5.902 1.878 0.709 ETKDGv3 10
1SI C17 5.960 -0.478 0.096 ETKDGv3 11
1SI C1 -2.881 0.244 0.434 ETKDGv3 12
1SI C11 3.022 -2.676 -0.235 ETKDGv3 13
1SI C12 3.087 -1.771 -1.200 ETKDGv3 14
1SI C14 5.110 2.151 -0.336 ETKDGv3 15
1SI C16 6.349 0.489 0.934 ETKDGv3 16
1SI C2 -4.323 0.585 0.518 ETKDGv3 17
1SI C3 -5.004 1.337 -0.573 ETKDGv3 18
1SI C9 1.023 -1.692 -0.408 ETKDGv3 19
1SI F1 -6.918 2.326 -1.475 ETKDGv3 20
1SI N2 -0.901 -0.388 -0.968 ETKDGv3 21
1SI O1 -2.217 0.124 1.500 ETKDGv3 22
1SI O2 1.868 -1.128 -1.354 ETKDGv3 23
1SI S1 4.542 -1.411 -2.176 ETKDGv3 24
1SI H1 -2.712 0.360 -1.711 ETKDGv3 25
1SI H2 -8.135 1.454 0.771 ETKDGv3 26
1SI H3 -7.041 0.256 2.570 ETKDGv3 27
1SI H4 -4.580 -0.314 2.420 ETKDGv3 28
1SI H5 -0.966 -1.811 0.539 ETKDGv3 29
1SI H6 1.248 -3.222 1.090 ETKDGv3 30
1SI H7 6.212 2.666 1.382 ETKDGv3 31
1SI H8 6.281 -1.499 0.254 ETKDGv3 32
1SI H9 3.827 -3.317 0.097 ETKDGv3 33
1SI H10 4.774 3.164 -0.514 ETKDGv3 34
1SI H11 6.989 0.257 1.775 ETKDGv3 35
1SI H12 -4.453 1.686 -1.435 ETKDGv3 36
#