data_1PS
#
_chem_comp.id 1PS
_chem_comp.name 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H11 N O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "1-(3-SULFOPROPYL) PYRIDINIUM; PPS"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-11-14
_chem_comp.pdbx_modified_date 2020-05-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 201.243
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1PS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1R4P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1PS N1 N1 N 1 1 Y N N N N N 23.897 23.126 8.458 2.189 -0.002 0.554 N1 1PS 1
1PS C1 C1 C 0 1 Y N N N N N 25.118 23.661 8.100 2.748 1.151 0.243 C1 1PS 2
1PS C2 C2 C 0 1 Y N N N N N 26.175 22.825 7.766 3.951 1.193 -0.436 C2 1PS 3
1PS C3 C3 C 0 1 Y N N N N N 23.695 21.748 8.488 2.751 -1.153 0.239 C3 1PS 4
1PS C4 C4 C 0 1 Y N N N N N 24.748 20.898 8.151 3.952 -1.189 -0.444 C4 1PS 5
1PS C5 C5 C 0 1 Y N N N N N 25.979 21.441 7.796 4.570 0.003 -0.788 C5 1PS 6
1PS C6 C6 C 0 1 N N N N N N 22.771 24.009 8.832 0.913 -0.005 1.274 C6 1PS 7
1PS C7 C7 C 0 1 N N N N N N 22.690 24.173 10.325 -0.240 -0.001 0.268 C7 1PS 8
1PS C8 C8 C 0 1 N N N N N N 23.913 24.884 10.822 -1.573 -0.004 1.020 C8 1PS 9
1PS S1 S1 S 0 1 N N N N N N 24.016 25.020 12.566 -2.940 0.001 -0.173 S1 1PS 10
1PS O1 O1 O -1 1 N N N N N N 22.745 25.613 13.009 -4.205 -0.002 0.546 O1 1PS 11
1PS O2 O2 O 0 1 N N N N N N 25.164 25.878 12.829 -2.851 -1.185 -1.011 O2 1PS 12
1PS O3 O3 O 0 1 N N N N N N 24.182 23.664 13.066 -2.851 1.193 -1.002 O3 1PS 13
1PS H1 H1 H 0 1 N N N N N N 25.249 24.756 8.080 2.260 2.073 0.521 H1 1PS 14
1PS H2 H2 H 0 1 N N N N N N 27.151 23.252 7.482 4.404 2.140 -0.688 H2 1PS 15
1PS H3 H3 H 0 1 N N N N N N 22.713 21.335 8.775 2.263 -2.077 0.511 H3 1PS 16
1PS H4 H4 H 0 1 N N N N N N 24.608 19.804 8.165 4.405 -2.135 -0.703 H4 1PS 17
1PS H5 H5 H 0 1 N N N N N N 26.810 20.765 7.534 5.510 0.005 -1.319 H5 1PS 18
1PS H61 1H6 H 0 1 N N N N N N 22.829 24.993 8.312 0.849 0.883 1.903 H61 1PS 19
1PS H62 2H6 H 0 1 N N N N N N 21.806 23.649 8.404 0.849 -0.897 1.896 H62 1PS 20
1PS H71 1H7 H 0 1 N N N N N N 21.750 24.682 10.641 -0.176 -0.889 -0.361 H71 1PS 21
1PS H72 2H7 H 0 1 N N N N N N 22.528 23.200 10.846 -0.176 0.891 -0.355 H72 1PS 22
1PS H81 1H8 H 0 1 N N N N N N 24.833 24.403 10.415 -1.637 0.884 1.649 H81 1PS 23
1PS H82 2H8 H 0 1 N N N N N N 23.996 25.890 10.348 -1.637 -0.896 1.642 H82 1PS 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1PS N1 C1 SING Y N 1
1PS N1 C3 DOUB Y N 2
1PS N1 C6 SING N N 3
1PS C1 C2 DOUB Y N 4
1PS C1 H1 SING N N 5
1PS C2 C5 SING Y N 6
1PS C2 H2 SING N N 7
1PS C3 C4 SING Y N 8
1PS C3 H3 SING N N 9
1PS C4 C5 DOUB Y N 10
1PS C4 H4 SING N N 11
1PS C5 H5 SING N N 12
1PS C6 C7 SING N N 13
1PS C6 H61 SING N N 14
1PS C6 H62 SING N N 15
1PS C7 C8 SING N N 16
1PS C7 H71 SING N N 17
1PS C7 H72 SING N N 18
1PS C8 S1 SING N N 19
1PS C8 H81 SING N N 20
1PS C8 H82 SING N N 21
1PS S1 O1 SING N N 22
1PS S1 O2 DOUB N N 23
1PS S1 O3 DOUB N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1PS SMILES ACDLabs 10.04 "[O-]S(=O)(=O)CCC[n+]1ccccc1"
1PS SMILES_CANONICAL CACTVS 3.341 "[O-][S](=O)(=O)CCC[n+]1ccccc1"
1PS SMILES CACTVS 3.341 "[O-][S](=O)(=O)CCC[n+]1ccccc1"
1PS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc[n+](cc1)CCCS(=O)(=O)[O-]
1PS SMILES "OpenEye OEToolkits" 1.5.0 c1cc[n+](cc1)CCCS(=O)(=O)[O-]
1PS InChI InChI 1.03 InChI=1S/C8H11NO3S/c10-13(11,12)8-4-7-9-5-2-1-3-6-9/h1-3,5-6H,4,7-8H2
1PS InChIKey InChI 1.03 REEBJQTUIJTGAL-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1PS "SYSTEMATIC NAME" ACDLabs 10.04 3-pyridinium-1-ylpropane-1-sulfonate
1PS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-pyridin-1-ium-1-ylpropane-1-sulfonate
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1PS 'Create component' 2003-11-14 RCSB
1PS 'Modify descriptor' 2011-06-04 RCSB
1PS 'Modify synonyms' 2020-05-26 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 1PS "1-(3-SULFOPROPYL) PYRIDINIUM" ? ?
2 1PS PPS ? ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
1PS '1-(3-SULFOPROPYL) PYRIDINIUM' wwPDB ?
1PS PPS wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1PS N1 N 6.897 1.399 1
1PS C1 C 5.598 2.150 2
1PS C2 C 5.598 3.650 3
1PS C3 C 8.196 2.150 4
1PS C4 C 8.196 3.650 5
1PS C5 C 6.897 4.399 6
1PS C6 C 6.897 -0.101 7
1PS C7 C 5.598 -0.851 8
1PS C8 C 5.598 -2.350 9
1PS S1 S 4.299 -3.100 10
1PS O1 O 3.000 -3.850 11
1PS O2 O 5.049 -4.399 12
1PS O3 O 3.549 -1.802 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1PS N1 C1 DOUBLE NONE 1
1PS N1 C3 SINGLE NONE 2
1PS N1 C6 SINGLE NONE 3
1PS C1 C2 SINGLE NONE 4
1PS C2 C5 DOUBLE NONE 5
1PS C3 C4 DOUBLE NONE 6
1PS C4 C5 SINGLE NONE 7
1PS C6 C7 SINGLE NONE 8
1PS C7 C8 SINGLE NONE 9
1PS C8 S1 SINGLE NONE 10
1PS S1 O1 SINGLE NONE 11
1PS S1 O2 DOUBLE NONE 12
1PS S1 O3 DOUBLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1PS MurckoScaffold S1 scaffold 'c1cc[nH+]cc1' InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H/p+1 JUJWROOIHBZHMG-UHFFFAOYSA-O
1PS pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1PS N1 S1 1
1PS C1 S1 1
1PS C2 S1 1
1PS C3 S1 1
1PS C4 S1 1
1PS C5 S1 1
1PS C1 F1 1
1PS C2 F1 1
1PS C5 F1 1
1PS C4 F1 1
1PS C3 F1 1
1PS N1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1PS
_pdbe_chem_comp_rdkit_properties.exactmw 201.046
_pdbe_chem_comp_rdkit_properties.amw 201.247
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.375
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 93.039
_pdbe_chem_comp_rdkit_properties.tpsa 61.080
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.091
_pdbe_chem_comp_rdkit_properties.CrippenMR 45.818
_pdbe_chem_comp_rdkit_properties.chi0v 6.897
_pdbe_chem_comp_rdkit_properties.chi1v 4.283
_pdbe_chem_comp_rdkit_properties.chi2v 1.156
_pdbe_chem_comp_rdkit_properties.chi3v 1.156
_pdbe_chem_comp_rdkit_properties.chi4v 0.595
_pdbe_chem_comp_rdkit_properties.chi0n 17.080
_pdbe_chem_comp_rdkit_properties.chi1n 8.375
_pdbe_chem_comp_rdkit_properties.chi2n 0.804
_pdbe_chem_comp_rdkit_properties.chi3n 0.804
_pdbe_chem_comp_rdkit_properties.chi4n 0.424
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.940
_pdbe_chem_comp_rdkit_properties.kappa1 2.774
_pdbe_chem_comp_rdkit_properties.kappa2 4.340
_pdbe_chem_comp_rdkit_properties.kappa3 4.592
_pdbe_chem_comp_rdkit_properties.Phi 0.926
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1PS UniChem PDBe 1PS
1PS UniChem eMolecules 478628
1PS UniChem fdasrs QN4I6AI9EK
1PS UniChem SureChEMBL SCHEMBL536265
1PS UniChem 'PubChem TPHARMA' 15195535
1PS UniChem ACTor 15471-17-7
1PS UniChem 'EPA CompTox Dashboard' DTXSID3044592
1PS UniChem ChemicalBook CB2381057
1PS UniChem PubChem 84929
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1PS N1 1.187 0.395 -0.168 ETKDGv3 1
1PS C1 1.822 -0.496 -0.889 ETKDGv3 2
1PS C2 3.155 -0.981 -0.478 ETKDGv3 3
1PS C3 1.769 0.896 1.057 ETKDGv3 4
1PS C4 2.974 0.474 1.459 ETKDGv3 5
1PS C5 3.704 -0.514 0.646 ETKDGv3 6
1PS C6 -0.151 0.850 -0.564 ETKDGv3 7
1PS C7 -1.223 -0.055 0.052 ETKDGv3 8
1PS C8 -2.627 0.409 -0.340 ETKDGv3 9
1PS S1 -3.871 -0.649 0.380 ETKDGv3 10
1PS O1 -5.392 -0.104 -0.076 ETKDGv3 11
1PS O2 -3.684 -2.059 -0.105 ETKDGv3 12
1PS O3 -3.762 -0.618 1.879 ETKDGv3 13
1PS H1 1.382 -0.895 -1.796 ETKDGv3 14
1PS H2 3.679 -1.710 -1.082 ETKDGv3 15
1PS H3 1.232 1.617 1.661 ETKDGv3 16
1PS H4 3.408 0.850 2.376 ETKDGv3 17
1PS H5 4.679 -0.861 0.962 ETKDGv3 18
1PS H61 -0.249 0.852 -1.673 ETKDGv3 19
1PS H62 -0.308 1.899 -0.225 ETKDGv3 20
1PS H71 -1.122 -0.037 1.159 ETKDGv3 21
1PS H72 -1.065 -1.097 -0.301 ETKDGv3 22
1PS H81 -2.739 0.387 -1.446 ETKDGv3 23
1PS H82 -2.797 1.448 0.015 ETKDGv3 24
#