data_1IN
#
_chem_comp.id 1IN
_chem_comp.name
;1-[2-HYDROXY-4-(2-HYDROXY-5-METHYL-CYCLOPENTYLCARBAMOYL)5-PHENYL-PENTYL]-4-(3-PYRIDIN-3-YL-PROPIONYL)-PIPERAZINE-2-CARB
OXYLIC ACID TERT-BUTYLAMIDE
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H51 N5 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms L-738,317
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 621.810
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1IN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2BPV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1IN C1 C1 C 0 1 N N N N N N 9.179 24.072 4.194 2.022 -0.885 3.549 C1 1IN 1
1IN C2 C2 C 0 1 N N S N N N 10.352 24.965 4.625 2.021 -0.021 2.283 C2 1IN 2
1IN C3 C3 C 0 1 N N N N N N 10.403 24.980 6.145 3.307 -0.236 1.527 C3 1IN 3
1IN O4 O4 O 0 1 N N N N N N 18.574 19.924 4.905 -1.765 0.086 -7.314 O4 1IN 4
1IN O5 O5 O 0 1 N N N N N N 7.994 24.619 0.836 1.656 -0.346 6.191 O5 1IN 5
1IN C7 C7 C 0 1 N N N N N N 8.936 25.395 8.734 6.718 1.240 1.631 C7 1IN 6
1IN C8 C8 C 0 1 N N N N N N 11.513 24.411 2.552 -0.339 -0.017 2.143 C8 1IN 7
1IN C9 C9 C 0 1 N N N N N N 10.320 23.604 2.083 -0.494 -0.880 3.399 C9 1IN 8
1IN C10 C10 C 0 1 N N N N N N 12.782 25.303 4.456 0.959 0.447 0.233 C10 1IN 9
1IN C11 C11 C 0 1 N N S N N N 13.932 24.312 4.685 -0.151 0.049 -0.739 C11 1IN 10
1IN C12 C12 C 0 1 N N N N N N 14.016 23.831 6.135 0.065 0.757 -2.078 C12 1IN 11
1IN C13 C13 C 0 1 N N R N N N 15.181 22.887 6.456 -0.931 0.219 -3.107 C13 1IN 12
1IN C14 C14 C 0 1 N N N N N N 15.265 22.756 7.978 -2.352 0.608 -2.693 C14 1IN 13
1IN C15 C15 C 0 1 Y N N N N N 16.379 21.841 8.425 -3.333 0.077 -3.706 C15 1IN 14
1IN C16 C16 C 0 1 Y N N N N N 17.713 22.145 8.152 -3.802 -1.218 -3.600 C16 1IN 15
1IN C19 C19 C 0 1 Y N N N N N 17.027 19.833 9.604 -4.665 0.399 -5.669 C19 1IN 16
1IN C20 C20 C 0 1 Y N N N N N 16.030 20.685 9.132 -3.768 0.887 -4.737 C20 1IN 17
1IN C21 C21 C 0 1 N N N N N N 14.979 21.507 5.802 -0.623 0.807 -4.460 C21 1IN 18
1IN C22 C22 C 0 1 N N S N N N 16.191 19.527 5.022 0.501 0.721 -6.619 C22 1IN 19
1IN C24 C24 C 0 1 N N N N N N 17.609 17.738 4.558 0.190 -1.150 -8.123 C24 1IN 20
1IN C27 C27 C 0 1 N N N N N N 5.554 25.172 2.149 -0.511 -0.013 7.683 C27 1IN 21
1IN C30 C30 C 0 1 N N S N N N 15.744 19.014 3.624 1.910 0.251 -7.036 C30 1IN 22
1IN C31 C31 C 0 1 N N N N N N 8.032 24.546 2.064 0.642 -0.464 5.535 C31 1IN 23
1IN C32 C32 C 0 1 Y N N N N N 3.094 24.992 2.133 -2.501 -0.961 8.887 C32 1IN 24
1IN C33 C33 C 0 1 Y N N N N N 1.872 24.944 2.811 -3.738 -0.774 9.484 C33 1IN 25
1IN C34 C34 C 0 1 Y N N N N N 1.902 24.968 4.213 -4.285 0.494 9.517 C34 1IN 26
1IN C35 C35 C 0 1 Y N N N N N 4.232 25.069 4.247 -2.463 1.378 8.418 C35 1IN 27
1IN N1 N1 N 0 1 N N N N N N 9.125 24.111 2.738 0.720 -0.732 4.217 N1 1IN 28
1IN O1 O1 O 0 1 N N N N N N 10.729 23.960 6.759 3.361 -1.068 0.647 O1 1IN 29
1IN N2 N2 N 0 1 N N N N N N 10.042 26.167 6.691 4.397 0.496 1.830 N2 1IN 30
1IN C4 C4 C 0 1 N N N N N N 9.959 26.375 8.129 5.647 0.288 1.095 C4 1IN 31
1IN C5 C5 C 0 1 N N N N N N 9.466 27.818 8.359 6.112 -1.158 1.280 C5 1IN 32
1IN C6 C6 C 0 1 N N N N N N 11.340 26.205 8.779 5.417 0.564 -0.391 C6 1IN 33
1IN N3 N3 N 0 1 N N N N N N 11.629 24.508 4.013 0.886 -0.397 1.432 N3 1IN 34
1IN O2 O2 O 0 1 N N N N N N 15.143 24.989 4.371 -1.418 0.429 -0.198 O2 1IN 35
1IN C17 C17 C 0 1 Y N N N N N 18.714 21.292 8.611 -4.702 -1.705 -4.529 C17 1IN 36
1IN C18 C18 C 0 1 Y N N N N N 18.371 20.137 9.337 -5.134 -0.897 -5.563 C18 1IN 37
1IN O3 O3 O 0 1 N N N N N N 13.874 20.964 5.788 -1.035 1.911 -4.749 O3 1IN 38
1IN N4 N4 N 0 1 N N N N N N 16.082 20.973 5.250 0.109 0.107 -5.348 N4 1IN 39
1IN C23 C23 C 0 1 N N R N N N 17.596 19.015 5.404 -0.417 0.228 -7.766 C23 1IN 40
1IN C25 C25 C 0 1 N N N N N N 16.853 18.006 3.302 1.713 -0.938 -7.992 C25 1IN 41
1IN C29 C29 C 0 1 N N N N N N 15.727 20.116 2.603 2.700 -0.192 -5.803 C29 1IN 42
1IN C26 C26 C 0 1 N N N N N N 6.830 24.945 2.833 -0.703 -0.311 6.195 C26 1IN 43
1IN C28 C28 C 0 1 Y N N N N N 4.287 25.062 2.854 -1.857 0.139 8.343 C28 1IN 44
1IN N5 N5 N 0 1 Y N N N N N 3.061 25.013 4.869 -3.644 1.519 8.989 N5 1IN 45
1IN H11A 1H1 H 0 0 N N N N N N 9.244 23.036 4.602 2.819 -0.556 4.216 H11A 1IN 46
1IN H12 2H1 H 0 1 N N N N N N 8.213 24.354 4.675 2.176 -1.930 3.279 H12 1IN 47
1IN H2 H2 H 0 1 N N N N N N 10.200 26.007 4.260 1.934 1.028 2.561 H2 1IN 48
1IN HO4 HO4 H 0 1 N N N N N N 19.438 19.608 5.140 -2.266 -0.298 -8.046 HO4 1IN 49
1IN H71 1H7 H 0 1 N N N N N N 8.872 25.554 9.835 7.649 1.084 1.084 H71 1IN 50
1IN H72 2H7 H 0 1 N N N N N N 7.939 25.469 8.239 6.387 2.270 1.499 H72 1IN 51
1IN H73 3H7 H 0 1 N N N N N N 9.164 24.334 8.474 6.882 1.043 2.690 H73 1IN 52
1IN H81 1H8 H 0 1 N N N N N N 12.455 24.011 2.109 -0.282 1.033 2.429 H81 1IN 53
1IN H82 2H8 H 0 1 N N N N N N 11.505 25.426 2.091 -1.199 -0.168 1.490 H82 1IN 54
1IN H91 1H9 H 0 1 N N N N N N 10.224 23.591 0.972 -1.362 -0.548 3.968 H91 1IN 55
1IN H92 2H9 H 0 1 N N N N N N 10.458 22.508 2.238 -0.618 -1.925 3.113 H92 1IN 56
1IN H101 1H10 H 0 0 N N N N N N 12.564 25.939 5.345 1.928 0.314 -0.246 H101 1IN 57
1IN H102 2H10 H 0 0 N N N N N N 13.044 26.129 3.754 0.835 1.492 0.518 H102 1IN 58
1IN H11 H11 H 0 1 N N N N N N 13.757 23.416 4.043 -0.130 -1.030 -0.892 H11 1IN 59
1IN H121 1H12 H 0 0 N N N N N N 14.034 24.706 6.825 1.081 0.574 -2.426 H121 1IN 60
1IN H122 2H12 H 0 0 N N N N N N 13.051 23.360 6.436 -0.087 1.829 -1.950 H122 1IN 61
1IN H13 H13 H 0 1 N N N N N N 16.130 23.302 6.045 -0.851 -0.866 -3.156 H13 1IN 62
1IN H141 1H14 H 0 0 N N N N N N 15.352 23.757 8.461 -2.574 0.183 -1.714 H141 1IN 63
1IN H142 2H14 H 0 0 N N N N N N 14.287 22.433 8.405 -2.431 1.694 -2.644 H142 1IN 64
1IN H16 H16 H 0 1 N N N N N N 17.973 23.050 7.579 -3.465 -1.850 -2.791 H16 1IN 65
1IN H19 H19 H 0 1 N N N N N N 16.756 18.932 10.180 -5.002 1.030 -6.478 H19 1IN 66
1IN H20 H20 H 0 1 N N N N N N 14.969 20.445 9.317 -3.402 1.900 -4.820 H20 1IN 67
1IN H22 H22 H 0 1 N N N N N N 15.433 19.080 5.707 0.468 1.808 -6.544 H22 1IN 68
1IN H241 1H24 H 0 0 N N N N N N 18.640 17.358 4.367 -0.069 -1.428 -9.145 H241 1IN 69
1IN H242 2H24 H 0 0 N N N N N N 17.222 16.850 5.111 -0.150 -1.911 -7.421 H242 1IN 70
1IN H271 1H27 H 0 0 N N N N N N 5.594 26.178 1.670 0.031 -0.834 8.151 H271 1IN 71
1IN H272 2H27 H 0 0 N N N N N N 5.514 24.496 1.262 0.056 0.910 7.798 H272 1IN 72
1IN H30 H30 H 0 1 N N N N N N 14.710 18.594 3.614 2.437 1.057 -7.547 H30 1IN 73
1IN H32 H32 H 0 1 N N N N N N 3.116 24.974 1.030 -2.050 -1.942 8.847 H32 1IN 74
1IN H33 H33 H 0 1 N N N N N N 0.918 24.889 2.259 -4.268 -1.609 9.918 H33 1IN 75
1IN H34 H34 H 0 1 N N N N N N 0.981 24.950 4.821 -5.248 0.649 9.979 H34 1IN 76
1IN H35 H35 H 0 1 N N N N N N 5.138 25.120 4.873 -1.968 2.241 7.996 H35 1IN 77
1IN HN2 HN2 H 0 1 N N N N N N 9.832 26.904 6.018 4.353 1.162 2.534 HN2 1IN 78
1IN H51 1H5 H 0 1 N N N N N N 10.206 28.527 7.921 6.276 -1.354 2.339 H51 1IN 79
1IN H52 2H5 H 0 1 N N N N N N 8.435 27.982 7.966 5.348 -1.836 0.898 H52 1IN 80
1IN H53 3H5 H 0 1 N N N N N N 9.258 28.030 9.433 7.042 -1.313 0.733 H53 1IN 81
1IN H61 1H6 H 0 1 N N N N N N 12.080 26.914 8.341 5.086 1.594 -0.522 H61 1IN 82
1IN H62 2H6 H 0 1 N N N N N N 11.286 26.301 9.888 6.347 0.408 -0.938 H62 1IN 83
1IN H63 3H6 H 0 1 N N N N N N 11.695 25.150 8.716 4.654 -0.114 -0.773 H63 1IN 84
1IN HO2 HO2 H 0 1 N N N N N N 15.854 24.375 4.512 -1.394 1.388 -0.079 HO2 1IN 85
1IN H17 H17 H 0 1 N N N N N N 19.770 21.529 8.401 -5.069 -2.718 -4.446 H17 1IN 86
1IN H18 H18 H 0 1 N N N N N N 19.164 19.462 9.700 -5.837 -1.278 -6.290 H18 1IN 87
1IN HN4 HN4 H 0 1 N N N N N N 16.812 21.643 5.011 0.377 -0.802 -5.146 HN4 1IN 88
1IN H23 H23 H 0 1 N N N N N N 17.800 18.886 6.492 -0.366 0.906 -8.618 H23 1IN 89
1IN H251 1H25 H 0 0 N N N N N N 17.510 18.340 2.465 2.143 -0.708 -8.967 H251 1IN 90
1IN H252 2H25 H 0 0 N N N N N N 16.465 17.075 2.824 2.180 -1.831 -7.578 H252 1IN 91
1IN H291 1H29 H 0 0 N N N N N N 15.406 19.748 1.600 3.689 -0.534 -6.109 H291 1IN 92
1IN H292 2H29 H 0 0 N N N N N N 15.097 20.972 2.941 2.803 0.646 -5.116 H292 1IN 93
1IN H293 3H29 H 0 0 N N N N N N 16.713 20.633 2.548 2.172 -1.006 -5.307 H293 1IN 94
1IN H261 1H26 H 0 0 N N N N N N 7.078 25.858 3.422 -1.246 0.509 5.727 H261 1IN 95
1IN H262 2H26 H 0 0 N N N N N N 6.665 24.193 3.640 -1.271 -1.235 6.080 H262 1IN 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1IN C1 C2 SING N N 1
1IN C1 N1 SING N N 2
1IN C1 H11A SING N N 3
1IN C1 H12 SING N N 4
1IN C2 C3 SING N N 5
1IN C2 N3 SING N N 6
1IN C2 H2 SING N N 7
1IN C3 O1 DOUB N N 8
1IN C3 N2 SING N N 9
1IN O4 C23 SING N N 10
1IN O4 HO4 SING N N 11
1IN O5 C31 DOUB N N 12
1IN C7 C4 SING N N 13
1IN C7 H71 SING N N 14
1IN C7 H72 SING N N 15
1IN C7 H73 SING N N 16
1IN C8 C9 SING N N 17
1IN C8 N3 SING N N 18
1IN C8 H81 SING N N 19
1IN C8 H82 SING N N 20
1IN C9 N1 SING N N 21
1IN C9 H91 SING N N 22
1IN C9 H92 SING N N 23
1IN C10 C11 SING N N 24
1IN C10 N3 SING N N 25
1IN C10 H101 SING N N 26
1IN C10 H102 SING N N 27
1IN C11 C12 SING N N 28
1IN C11 O2 SING N N 29
1IN C11 H11 SING N N 30
1IN C12 C13 SING N N 31
1IN C12 H121 SING N N 32
1IN C12 H122 SING N N 33
1IN C13 C14 SING N N 34
1IN C13 C21 SING N N 35
1IN C13 H13 SING N N 36
1IN C14 C15 SING N N 37
1IN C14 H141 SING N N 38
1IN C14 H142 SING N N 39
1IN C15 C16 DOUB Y N 40
1IN C15 C20 SING Y N 41
1IN C16 C17 SING Y N 42
1IN C16 H16 SING N N 43
1IN C19 C20 DOUB Y N 44
1IN C19 C18 SING Y N 45
1IN C19 H19 SING N N 46
1IN C20 H20 SING N N 47
1IN C21 O3 DOUB N N 48
1IN C21 N4 SING N N 49
1IN C22 C30 SING N N 50
1IN C22 N4 SING N N 51
1IN C22 C23 SING N N 52
1IN C22 H22 SING N N 53
1IN C24 C23 SING N N 54
1IN C24 C25 SING N N 55
1IN C24 H241 SING N N 56
1IN C24 H242 SING N N 57
1IN C27 C26 SING N N 58
1IN C27 C28 SING N N 59
1IN C27 H271 SING N N 60
1IN C27 H272 SING N N 61
1IN C30 C25 SING N N 62
1IN C30 C29 SING N N 63
1IN C30 H30 SING N N 64
1IN C31 N1 SING N N 65
1IN C31 C26 SING N N 66
1IN C32 C33 DOUB Y N 67
1IN C32 C28 SING Y N 68
1IN C32 H32 SING N N 69
1IN C33 C34 SING Y N 70
1IN C33 H33 SING N N 71
1IN C34 N5 DOUB Y N 72
1IN C34 H34 SING N N 73
1IN C35 C28 DOUB Y N 74
1IN C35 N5 SING Y N 75
1IN C35 H35 SING N N 76
1IN N2 C4 SING N N 77
1IN N2 HN2 SING N N 78
1IN C4 C5 SING N N 79
1IN C4 C6 SING N N 80
1IN C5 H51 SING N N 81
1IN C5 H52 SING N N 82
1IN C5 H53 SING N N 83
1IN C6 H61 SING N N 84
1IN C6 H62 SING N N 85
1IN C6 H63 SING N N 86
1IN O2 HO2 SING N N 87
1IN C17 C18 DOUB Y N 88
1IN C17 H17 SING N N 89
1IN C18 H18 SING N N 90
1IN N4 HN4 SING N N 91
1IN C23 H23 SING N N 92
1IN C25 H251 SING N N 93
1IN C25 H252 SING N N 94
1IN C29 H291 SING N N 95
1IN C29 H292 SING N N 96
1IN C29 H293 SING N N 97
1IN C26 H261 SING N N 98
1IN C26 H262 SING N N 99
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1IN SMILES ACDLabs 10.04 O=C(NC1C(C)CCC1O)C(Cc2ccccc2)CC(O)CN4C(C(=O)NC(C)(C)C)CN(C(=O)CCc3cccnc3)CC4
1IN SMILES_CANONICAL CACTVS 3.341 C[C@H]1CC[C@@H](O)[C@H]1NC(=O)[C@@H](C[C@H](O)CN2CCN(C[C@H]2C(=O)NC(C)(C)C)C(=O)CCc3cccnc3)Cc4ccccc4
1IN SMILES CACTVS 3.341 C[CH]1CC[CH](O)[CH]1NC(=O)[CH](C[CH](O)CN2CCN(C[CH]2C(=O)NC(C)(C)C)C(=O)CCc3cccnc3)Cc4ccccc4
1IN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]1CC[C@H]([C@H]1NC(=O)[C@H](Cc2ccccc2)C[C@@H](C[N@@]3CCN(C[C@H]3C(=O)NC(C)(C)C)C(=O)CCc4cccnc4)O)O
1IN SMILES "OpenEye OEToolkits" 1.5.0 CC1CCC(C1NC(=O)C(Cc2ccccc2)CC(CN3CCN(CC3C(=O)NC(C)(C)C)C(=O)CCc4cccnc4)O)O
1IN InChI InChI 1.03 InChI=1S/C35H51N5O5/c1-24-12-14-30(42)32(24)37-33(44)27(19-25-9-6-5-7-10-25)20-28(41)22-39-17-18-40(23-29(39)34(45)38-35(2,3)4)31(43)15-13-26-11-8-16-36-21-26/h5-11,16,21,24,27-30,32,41-42H,12-15,17-20,22-23H2,1-4H3,(H,37,44)(H,38,45)/t24-,27+,28-,29-,30+,32-/m0/s1
1IN InChIKey InChI 1.03 ITUWYDLENJLLBB-FJPQDTJVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1IN "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-1-[(2S,4R)-4-benzyl-2-hydroxy-5-{[(1S,2R,5S)-2-hydroxy-5-methylcyclopentyl]amino}-5-oxopentyl]-N-tert-butyl-4-(3-pyridin-3-ylpropanoyl)piperazine-2-carboxamide (non-preferred name)"
1IN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (1S,2S)-N-tert-butyl-1-[(2S,4R)-2-hydroxy-5-[[(1S,2R,5S)-2-hydroxy-5-methyl-cyclopentyl]amino]-5-oxo-4-(phenylmethyl)pentyl]-4-(3-pyridin-3-ylpropanoyl)piperazine-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1IN 'Create component' 1999-07-08 RCSB
1IN 'Modify descriptor' 2011-06-04 RCSB
1IN 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 1IN
_pdbx_chem_comp_synonyms.name L-738,317
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 1IN
_pdbe_chem_comp_synonyms.name L-738,317
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1IN C1 C 8.196 2.654 1
1IN C2 C 8.196 1.154 2
1IN C3 C 6.897 0.404 3
1IN O4 O 8.154 -8.264 4
1IN O5 O 8.196 5.654 5
1IN C7 C 3.000 -0.346 6
1IN C8 C 10.794 1.154 7
1IN C9 C 10.794 2.654 8
1IN C10 C 9.495 -1.096 9
1IN C11 C 10.794 -1.846 10
1IN C12 C 10.794 -3.346 11
1IN C13 C 12.093 -4.096 12
1IN C14 C 13.392 -3.346 13
1IN C15 C 14.691 -4.096 14
1IN C16 C 14.691 -5.596 15
1IN C19 C 17.290 -4.096 16
1IN C20 C 15.990 -3.346 17
1IN C21 C 12.093 -5.596 18
1IN C22 C 10.794 -7.846 19
1IN C24 C 10.044 -10.154 20
1IN C27 C 10.794 7.154 21
1IN C30 C 12.008 -8.728 22
1IN C31 C 9.495 4.904 23
1IN C32 C 13.392 7.154 24
1IN C33 C 14.691 7.904 25
1IN C34 C 14.691 9.404 26
1IN C35 C 12.093 9.404 27
1IN N1 N 9.495 3.404 28
1IN O1 O 6.897 -1.096 29
1IN N2 N 5.598 1.154 30
1IN C4 C 4.299 0.404 31
1IN C5 C 3.549 1.703 32
1IN C6 C 5.049 -0.895 33
1IN N3 N 9.495 0.404 34
1IN O2 O 12.093 -1.096 35
1IN C17 C 15.990 -6.346 36
1IN C18 C 17.290 -5.596 37
1IN O3 O 13.392 -6.346 38
1IN N4 N 10.794 -6.346 39
1IN C23 C 9.581 -8.728 40
1IN C25 C 11.544 -10.154 41
1IN C29 C 13.434 -8.264 42
1IN C26 C 10.794 5.654 43
1IN C28 C 12.093 7.904 44
1IN N5 N 13.392 10.154 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1IN C1 C2 SINGLE NONE 1
1IN C1 N1 SINGLE NONE 2
1IN C2 C3 SINGLE BEGINDASH 3
1IN C2 N3 SINGLE NONE 4
1IN C3 O1 DOUBLE NONE 5
1IN C3 N2 SINGLE NONE 6
1IN C23 O4 SINGLE BEGINWEDGE 7
1IN O5 C31 DOUBLE NONE 8
1IN C7 C4 SINGLE NONE 9
1IN C8 C9 SINGLE NONE 10
1IN C8 N3 SINGLE NONE 11
1IN C9 N1 SINGLE NONE 12
1IN C10 C11 SINGLE NONE 13
1IN C10 N3 SINGLE NONE 14
1IN C11 C12 SINGLE NONE 15
1IN C11 O2 SINGLE BEGINWEDGE 16
1IN C13 C12 SINGLE BEGINWEDGE 17
1IN C13 C14 SINGLE NONE 18
1IN C13 C21 SINGLE NONE 19
1IN C14 C15 SINGLE NONE 20
1IN C15 C16 DOUBLE NONE 21
1IN C15 C20 SINGLE NONE 22
1IN C16 C17 SINGLE NONE 23
1IN C19 C20 DOUBLE NONE 24
1IN C19 C18 SINGLE NONE 25
1IN C21 O3 DOUBLE NONE 26
1IN C21 N4 SINGLE NONE 27
1IN C22 C30 SINGLE NONE 28
1IN C22 N4 SINGLE BEGINWEDGE 29
1IN C22 C23 SINGLE NONE 30
1IN C24 C23 SINGLE NONE 31
1IN C24 C25 SINGLE NONE 32
1IN C27 C26 SINGLE NONE 33
1IN C27 C28 SINGLE NONE 34
1IN C30 C25 SINGLE NONE 35
1IN C30 C29 SINGLE BEGINWEDGE 36
1IN C31 N1 SINGLE NONE 37
1IN C31 C26 SINGLE NONE 38
1IN C32 C33 DOUBLE NONE 39
1IN C32 C28 SINGLE NONE 40
1IN C33 C34 SINGLE NONE 41
1IN C34 N5 DOUBLE NONE 42
1IN C35 C28 DOUBLE NONE 43
1IN C35 N5 SINGLE NONE 44
1IN N2 C4 SINGLE NONE 45
1IN C4 C5 SINGLE NONE 46
1IN C4 C6 SINGLE NONE 47
1IN C17 C18 DOUBLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1IN MurckoScaffold S1 scaffold 'O=C(NC1CCCC1)[C@@H](CCCN1CCN(C(=O)CCc2cccnc2)CC1)Cc1ccccc1' InChI=1S/C29H40N4O2/c34-28(15-14-25-10-6-16-30-23-25)33-20-18-32(19-21-33)17-7-11-26(22-24-8-2-1-3-9-24)29(35)31-27-12-4-5-13-27/h1-3,6,8-10,16,23,26-27H,4-5,7,11-15,17-22H2,(H,31,35)/t26-/m0/s1 QZDVANQKGDMMET-SANMLTNESA-N
1IN amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1IN cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
1IN peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
1IN phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
1IN piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
1IN pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
1IN Z1741794237 F7 fragment CC1CNCCN1CCO InChI=1S/C7H16N2O/c1-7-6-8-2-3-9(7)4-5-10/h7-8,10H,2-6H2,1H3 SDMNEUXIWBRMPK-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1IN C1 S1 1
1IN C2 S1 1
1IN O5 S1 1
1IN C8 S1 1
1IN C9 S1 1
1IN C10 S1 1
1IN C11 S1 1
1IN C12 S1 1
1IN C13 S1 1
1IN C14 S1 1
1IN C15 S1 1
1IN C16 S1 1
1IN C19 S1 1
1IN C20 S1 1
1IN C21 S1 1
1IN C22 S1 1
1IN C24 S1 1
1IN C27 S1 1
1IN C30 S1 1
1IN C31 S1 1
1IN C32 S1 1
1IN C33 S1 1
1IN C34 S1 1
1IN C35 S1 1
1IN N1 S1 1
1IN N3 S1 1
1IN C17 S1 1
1IN C18 S1 1
1IN O3 S1 1
1IN N4 S1 1
1IN C23 S1 1
1IN C25 S1 1
1IN C26 S1 1
1IN C28 S1 1
1IN N5 S1 1
1IN N1 F1 1
1IN C31 F1 1
1IN O5 F1 1
1IN C26 F1 1
1IN N2 F1 2
1IN C3 F1 2
1IN O1 F1 2
1IN C2 F1 2
1IN N4 F1 3
1IN C21 F1 3
1IN O3 F1 3
1IN C13 F1 3
1IN C22 F2 1
1IN C30 F2 1
1IN C25 F2 1
1IN C24 F2 1
1IN C23 F2 1
1IN O1 F3 1
1IN C3 F3 1
1IN C2 F3 1
1IN N3 F3 1
1IN C15 F4 1
1IN C16 F4 1
1IN C17 F4 1
1IN C18 F4 1
1IN C19 F4 1
1IN C20 F4 1
1IN N1 F5 1
1IN C1 F5 1
1IN C2 F5 1
1IN N3 F5 1
1IN C8 F5 1
1IN C9 F5 1
1IN C34 F6 1
1IN C33 F6 1
1IN C32 F6 1
1IN C28 F6 1
1IN C35 F6 1
1IN N5 F6 1
1IN C3 F7 1
1IN C2 F7 1
1IN C1 F7 1
1IN N1 F7 1
1IN C9 F7 1
1IN C8 F7 1
1IN N3 F7 1
1IN C10 F7 1
1IN C11 F7 1
1IN O2 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1IN
_pdbe_chem_comp_rdkit_properties.exactmw 621.389
_pdbe_chem_comp_rdkit_properties.amw 621.823
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 96
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 339.090
_pdbe_chem_comp_rdkit_properties.tpsa 135.100
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.218
_pdbe_chem_comp_rdkit_properties.CrippenMR 172.458
_pdbe_chem_comp_rdkit_properties.chi0v 21.777
_pdbe_chem_comp_rdkit_properties.chi1v 11.454
_pdbe_chem_comp_rdkit_properties.chi2v 4.533
_pdbe_chem_comp_rdkit_properties.chi3v 4.533
_pdbe_chem_comp_rdkit_properties.chi4v 2.769
_pdbe_chem_comp_rdkit_properties.chi0n 72.777
_pdbe_chem_comp_rdkit_properties.chi1n 36.665
_pdbe_chem_comp_rdkit_properties.chi2n 4.533
_pdbe_chem_comp_rdkit_properties.chi3n 4.533
_pdbe_chem_comp_rdkit_properties.chi4n 2.769
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.340
_pdbe_chem_comp_rdkit_properties.kappa1 7.527
_pdbe_chem_comp_rdkit_properties.kappa2 15.781
_pdbe_chem_comp_rdkit_properties.kappa3 10.341
_pdbe_chem_comp_rdkit_properties.Phi 2.639
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1IN UniChem ZINC ZINC000024703513
1IN UniChem PubChem 449311
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1IN C1 2.567 -0.574 -1.336 ETKDGv3 1
1IN C2 1.324 -1.336 -0.813 ETKDGv3 2
1IN C3 1.391 -2.781 -1.236 ETKDGv3 3
1IN O4 -6.640 2.257 -1.396 ETKDGv3 4
1IN O5 5.963 -1.229 -0.170 ETKDGv3 5
1IN C7 1.333 -5.926 -0.916 ETKDGv3 6
1IN C8 2.019 -0.288 1.347 ETKDGv3 7
1IN C9 3.481 -0.592 1.039 ETKDGv3 8
1IN C10 -0.256 -1.254 1.113 ETKDGv3 9
1IN C11 -0.900 0.156 1.205 ETKDGv3 10
1IN C12 -2.376 0.049 1.668 ETKDGv3 11
1IN C13 -3.058 1.392 2.039 ETKDGv3 12
1IN C14 -2.411 2.120 3.244 ETKDGv3 13
1IN C15 -2.400 1.270 4.491 ETKDGv3 14
1IN C16 -3.531 1.070 5.192 ETKDGv3 15
1IN C19 -1.141 -0.173 6.019 ETKDGv3 16
1IN C20 -1.145 0.612 4.934 ETKDGv3 17
1IN C21 -3.172 2.300 0.838 ETKDGv3 18
1IN C22 -4.273 2.796 -1.401 ETKDGv3 19
1IN C24 -5.638 3.185 -3.385 ETKDGv3 20
1IN C27 5.815 1.474 -1.926 ETKDGv3 21
1IN C30 -3.688 1.957 -2.544 ETKDGv3 22
1IN C31 5.070 -0.698 -0.884 ETKDGv3 23
1IN C32 4.225 2.650 -0.248 ETKDGv3 24
1IN C33 3.088 3.305 0.004 ETKDGv3 25
1IN C34 2.200 3.668 -1.116 ETKDGv3 26
1IN C35 3.742 2.641 -2.633 ETKDGv3 27
1IN N1 3.707 -0.680 -0.410 ETKDGv3 28
1IN O1 0.631 -3.181 -2.159 ETKDGv3 29
1IN N2 2.329 -3.680 -0.617 ETKDGv3 30
1IN C4 2.600 -5.061 -1.062 ETKDGv3 31
1IN C5 3.710 -5.665 -0.176 ETKDGv3 32
1IN C6 3.087 -5.063 -2.524 ETKDGv3 33
1IN N3 1.157 -1.267 0.662 ETKDGv3 34
1IN O2 -0.795 0.840 -0.017 ETKDGv3 35
1IN C17 -3.521 0.207 6.392 ETKDGv3 36
1IN C18 -2.386 -0.385 6.783 ETKDGv3 37
1IN O3 -2.303 3.194 0.636 ETKDGv3 38
1IN N4 -4.240 2.109 -0.103 ETKDGv3 39
1IN C23 -5.687 3.185 -1.850 ETKDGv3 40
1IN C25 -4.288 2.594 -3.798 ETKDGv3 41
1IN C29 -4.047 0.461 -2.466 ETKDGv3 42
1IN C26 5.493 -0.009 -2.159 ETKDGv3 43
1IN C28 4.577 2.284 -1.641 ETKDGv3 44
1IN N5 2.527 3.353 -2.336 ETKDGv3 45
1IN H11A 2.830 -0.967 -2.340 ETKDGv3 46
1IN H12 2.304 0.497 -1.454 ETKDGv3 47
1IN H2 0.450 -0.883 -1.325 ETKDGv3 48
1IN HO4 -7.530 2.679 -1.524 ETKDGv3 49
1IN H71 0.941 -5.861 0.122 ETKDGv3 50
1IN H72 1.559 -6.991 -1.141 ETKDGv3 51
1IN H73 0.534 -5.601 -1.612 ETKDGv3 52
1IN H81 1.868 -0.348 2.448 ETKDGv3 53
1IN H82 1.786 0.746 1.010 ETKDGv3 54
1IN H91 4.111 0.215 1.471 ETKDGv3 55
1IN H92 3.772 -1.551 1.519 ETKDGv3 56
1IN H101 -0.296 -1.723 2.120 ETKDGv3 57
1IN H102 -0.873 -1.902 0.451 ETKDGv3 58
1IN H11 -0.346 0.733 1.969 ETKDGv3 59
1IN H121 -2.431 -0.625 2.549 ETKDGv3 60
1IN H122 -2.973 -0.449 0.872 ETKDGv3 61
1IN H13 -4.098 1.143 2.345 ETKDGv3 62
1IN H141 -1.379 2.449 3.000 ETKDGv3 63
1IN H142 -2.986 3.048 3.456 ETKDGv3 64
1IN H16 -4.461 1.531 4.884 ETKDGv3 65
1IN H19 -0.225 -0.652 6.339 ETKDGv3 66
1IN H20 -0.225 0.763 4.384 ETKDGv3 67
1IN H22 -3.684 3.740 -1.340 ETKDGv3 68
1IN H241 -5.735 4.222 -3.775 ETKDGv3 69
1IN H242 -6.465 2.575 -3.812 ETKDGv3 70
1IN H271 6.314 1.880 -2.833 ETKDGv3 71
1IN H272 6.542 1.574 -1.090 ETKDGv3 72
1IN H30 -2.579 2.052 -2.557 ETKDGv3 73
1IN H32 4.884 2.383 0.568 ETKDGv3 74
1IN H33 2.820 3.567 1.019 ETKDGv3 75
1IN H34 1.277 4.199 -0.925 ETKDGv3 76
1IN H35 3.961 2.378 -3.659 ETKDGv3 77
1IN HN2 2.875 -3.308 0.192 ETKDGv3 78
1IN H51 3.943 -6.707 -0.484 ETKDGv3 79
1IN H52 3.392 -5.678 0.889 ETKDGv3 80
1IN H53 4.639 -5.060 -0.253 ETKDGv3 81
1IN H61 2.290 -4.729 -3.219 ETKDGv3 82
1IN H62 3.394 -6.086 -2.833 ETKDGv3 83
1IN H63 3.959 -4.383 -2.639 ETKDGv3 84
1IN HO2 -1.373 0.371 -0.673 ETKDGv3 85
1IN H17 -4.435 0.052 6.951 ETKDGv3 86
1IN H18 -2.378 -1.019 7.661 ETKDGv3 87
1IN HN4 -4.913 1.331 0.081 ETKDGv3 88
1IN H23 -5.934 4.202 -1.463 ETKDGv3 89
1IN H251 -3.620 3.414 -4.143 ETKDGv3 90
1IN H252 -4.403 1.870 -4.635 ETKDGv3 91
1IN H291 -5.147 0.312 -2.449 ETKDGv3 92
1IN H292 -3.606 -0.000 -1.560 ETKDGv3 93
1IN H293 -3.632 -0.072 -3.348 ETKDGv3 94
1IN H261 4.737 -0.111 -2.962 ETKDGv3 95
1IN H262 6.411 -0.507 -2.539 ETKDGv3 96
#