data_1IE
#
_chem_comp.id 1IE
_chem_comp.name ~{N}-(3-methylsulfanylphenyl)-4~{H}-cyclopenta[b]quinolin-9-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H16 N2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-10-13
_chem_comp.pdbx_modified_date 2023-10-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 304.409
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1IE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8H4J
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBC
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1IE N1 N1 N 0 1 N N N N N N -39.699 13.750 -21.445 -0.022 0.830 0.967 N1 1IE 1
1IE C1 C1 C 0 1 N N N N N N -44.031 11.572 -23.063 6.184 -0.120 -0.632 C1 1IE 2
1IE N2 N2 N 0 1 Y N N N N N -36.447 15.832 -19.680 -3.864 -0.270 -0.380 N2 1IE 3
1IE C3 C2 C 0 1 Y N N N N N -40.483 9.646 -21.921 3.332 -0.304 -1.235 C3 1IE 4
1IE C4 C3 C 0 1 Y N N N N N -39.196 10.061 -21.590 2.066 -0.500 -1.753 C4 1IE 5
1IE C5 C4 C 0 1 Y N N N N N -38.902 11.415 -21.466 0.953 -0.125 -1.024 C5 1IE 6
1IE C6 C5 C 0 1 Y N N N N N -39.909 12.363 -21.634 1.104 0.451 0.232 C6 1IE 7
1IE C7 C6 C 0 1 Y N N N N N -38.605 14.451 -20.865 -1.274 0.488 0.528 C7 1IE 8
1IE C8 C7 C 0 1 Y N N N N N -38.009 15.576 -21.457 -2.215 1.474 0.212 C8 1IE 9
1IE C9 C8 C 0 1 Y N N N N N -36.931 16.217 -20.836 -3.544 1.074 -0.260 C9 1IE 10
1IE C10 C9 C 0 1 Y N N N N N -37.038 14.770 -19.037 -2.952 -1.251 -0.062 C10 1IE 11
1IE C11 C10 C 0 1 Y N N N N N -36.569 14.399 -17.766 -3.306 -2.595 -0.187 C11 1IE 12
1IE C12 C11 C 0 1 Y N N N N N -37.196 13.429 -17.067 -2.395 -3.577 0.131 C12 1IE 13
1IE C13 C12 C 0 1 Y N N N N N -38.258 12.727 -17.607 -1.122 -3.244 0.578 C13 1IE 14
1IE C14 C13 C 0 1 Y N N N N N -38.697 12.997 -18.843 -0.753 -1.937 0.708 C14 1IE 15
1IE C15 C14 C 0 1 Y N N N N N -38.130 14.059 -19.590 -1.663 -0.919 0.391 C15 1IE 16
1IE C16 C15 C 0 1 Y N N N N N -36.396 17.377 -21.616 -4.240 2.238 -0.501 C16 1IE 17
1IE C17 C16 C 0 1 Y N N N N N -37.367 17.457 -22.815 -3.414 3.326 -0.203 C17 1IE 18
1IE C18 C17 C 0 1 Y N N N N N -38.322 16.255 -22.772 -2.199 2.885 0.225 C18 1IE 19
1IE C19 C18 C 0 1 Y N N N N N -41.213 11.948 -21.919 2.374 0.649 0.754 C19 1IE 20
1IE C2 C19 C 0 1 Y N N N N N -41.495 10.597 -22.107 3.490 0.266 0.022 C2 1IE 21
1IE S1 S1 S 0 1 N N N N N N -43.142 10.072 -22.505 5.105 0.516 0.681 S1 1IE 22
1IE H1 H1 H 0 1 N N N N N N -40.442 14.333 -21.773 0.083 1.331 1.791 H1 1IE 23
1IE H2 H2 H 0 1 N N N N N N -45.066 11.309 -23.326 6.013 0.446 -1.548 H2 1IE 24
1IE H3 H3 H 0 1 N N N N N N -44.037 12.317 -22.254 7.226 -0.014 -0.329 H3 1IE 25
1IE H4 H4 H 0 1 N N N N N N -43.524 11.992 -23.944 5.961 -1.172 -0.808 H4 1IE 26
1IE H5 H5 H 0 1 N N N N N N -35.663 16.302 -19.274 -4.748 -0.523 -0.690 H5 1IE 27
1IE H6 H6 H 0 1 N N N N N N -40.701 8.594 -22.034 4.200 -0.599 -1.807 H6 1IE 28
1IE H7 H7 H 0 1 N N N N N N -38.421 9.327 -21.428 1.946 -0.947 -2.728 H7 1IE 29
1IE H8 H8 H 0 1 N N N N N N -37.894 11.731 -21.240 -0.035 -0.280 -1.432 H8 1IE 30
1IE H9 H9 H 0 1 N N N N N N -35.704 14.891 -17.347 -4.292 -2.864 -0.533 H9 1IE 31
1IE H10 H10 H 0 1 N N N N N N -36.862 13.197 -16.067 -2.672 -4.616 0.033 H10 1IE 32
1IE H11 H11 H 0 1 N N N N N N -38.738 11.953 -17.026 -0.420 -4.027 0.824 H11 1IE 33
1IE H12 H12 H 0 1 N N N N N N -39.488 12.401 -19.273 0.238 -1.687 1.057 H12 1IE 34
1IE H13 H13 H 0 1 N N N N N N -35.544 18.002 -21.396 -5.256 2.300 -0.861 H13 1IE 35
1IE H14 H14 H 0 1 N N N N N N -37.373 18.235 -23.564 -3.698 4.364 -0.299 H14 1IE 36
1IE H15 H15 H 0 1 N N N N N N -39.051 15.961 -23.512 -1.368 3.508 0.522 H15 1IE 37
1IE H16 H16 H 0 1 N N N N N N -42.005 12.678 -21.994 2.494 1.097 1.730 H16 1IE 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1IE C1 S1 SING N N 1
1IE C17 C18 DOUB Y N 2
1IE C17 C16 SING Y N 3
1IE C18 C8 SING Y N 4
1IE S1 C2 SING N N 5
1IE C2 C3 DOUB Y N 6
1IE C2 C19 SING Y N 7
1IE C3 C4 SING Y N 8
1IE C19 C6 DOUB Y N 9
1IE C6 C5 SING Y N 10
1IE C6 N1 SING N N 11
1IE C16 C9 DOUB Y N 12
1IE C4 C5 DOUB Y N 13
1IE C8 C7 DOUB Y N 14
1IE C8 C9 SING Y N 15
1IE N1 C7 SING N N 16
1IE C7 C15 SING Y N 17
1IE C9 N2 SING Y N 18
1IE N2 C10 SING Y N 19
1IE C15 C10 DOUB Y N 20
1IE C15 C14 SING Y N 21
1IE C10 C11 SING Y N 22
1IE C14 C13 DOUB Y N 23
1IE C11 C12 DOUB Y N 24
1IE C13 C12 SING Y N 25
1IE N1 H1 SING N N 26
1IE C1 H2 SING N N 27
1IE C1 H3 SING N N 28
1IE C1 H4 SING N N 29
1IE N2 H5 SING N N 30
1IE C3 H6 SING N N 31
1IE C4 H7 SING N N 32
1IE C5 H8 SING N N 33
1IE C11 H9 SING N N 34
1IE C12 H10 SING N N 35
1IE C13 H11 SING N N 36
1IE C14 H12 SING N N 37
1IE C16 H13 SING N N 38
1IE C17 H14 SING N N 39
1IE C18 H15 SING N N 40
1IE C19 H16 SING N N 41
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1IE InChI InChI 1.06 InChI=1S/C19H16N2S/c1-22-14-7-4-6-13(12-14)20-19-15-8-2-3-10-17(15)21-18-11-5-9-16(18)19/h2-12,20-21H,1H3
1IE InChIKey InChI 1.06 ZMQQEACDZCVCPK-UHFFFAOYSA-N
1IE SMILES_CANONICAL CACTVS 3.385 CSc1cccc(Nc2c3ccccc3[nH]c4cccc24)c1
1IE SMILES CACTVS 3.385 CSc1cccc(Nc2c3ccccc3[nH]c4cccc24)c1
1IE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CSc1cccc(c1)Nc2c3ccccc3[nH]c-4cccc24
1IE SMILES "OpenEye OEToolkits" 2.0.7 CSc1cccc(c1)Nc2c3ccccc3[nH]c-4cccc24
#
_pdbx_chem_comp_identifier.comp_id 1IE
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier ~{N}-(3-methylsulfanylphenyl)-4~{H}-cyclopenta[b]quinolin-9-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1IE 'Create component' 2022-10-13 PDBC
1IE 'Initial release' 2023-10-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1IE N1 N 6.999 0.090 1
1IE C1 C 10.896 5.340 2
1IE N2 N 6.999 -4.410 3
1IE C3 C 10.896 2.340 4
1IE C4 C 10.896 0.840 5
1IE C5 C 9.597 0.090 6
1IE C6 C 8.298 0.840 7
1IE C7 C 6.999 -1.410 8
1IE C8 C 8.298 -2.160 9
1IE C9 C 8.298 -3.660 10
1IE C10 C 5.700 -3.660 11
1IE C11 C 4.359 -4.462 12
1IE C12 C 3.000 -3.691 13
1IE C13 C 3.000 -2.129 14
1IE C14 C 4.359 -1.358 15
1IE C15 C 5.700 -2.160 16
1IE C16 C 9.717 -4.117 17
1IE C17 C 10.593 -2.910 18
1IE C18 C 9.717 -1.703 19
1IE C19 C 8.298 2.340 20
1IE C2 C 9.597 3.090 21
1IE S1 S 9.597 4.590 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1IE C1 S1 SINGLE NONE 1
1IE C17 C18 DOUBLE NONE 2
1IE C17 C16 SINGLE NONE 3
1IE C18 C8 SINGLE NONE 4
1IE S1 C2 SINGLE NONE 5
1IE C2 C3 DOUBLE NONE 6
1IE C2 C19 SINGLE NONE 7
1IE C3 C4 SINGLE NONE 8
1IE C19 C6 DOUBLE NONE 9
1IE C6 C5 SINGLE NONE 10
1IE C6 N1 SINGLE NONE 11
1IE C16 C9 DOUBLE NONE 12
1IE C4 C5 DOUBLE NONE 13
1IE C8 C7 DOUBLE NONE 14
1IE C8 C9 SINGLE NONE 15
1IE N1 C7 SINGLE NONE 16
1IE C7 C15 SINGLE NONE 17
1IE C9 N2 SINGLE NONE 18
1IE N2 C10 SINGLE NONE 19
1IE C15 C10 DOUBLE NONE 20
1IE C15 C14 SINGLE NONE 21
1IE C10 C11 SINGLE NONE 22
1IE C14 C13 DOUBLE NONE 23
1IE C11 C12 DOUBLE NONE 24
1IE C13 C12 SINGLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1IE MurckoScaffold S1 scaffold 'c1ccc(Nc2c3cccc-3[nH]c3ccccc23)cc1' InChI=1S/C18H14N2/c1-2-7-13(8-3-1)19-18-14-9-4-5-11-16(14)20-17-12-6-10-15(17)18/h1-12,19-20H VNXTURPQOHDOGL-UHFFFAOYSA-N
1IE phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1IE N1 S1 1
1IE N2 S1 1
1IE C3 S1 1
1IE C4 S1 1
1IE C5 S1 1
1IE C6 S1 1
1IE C7 S1 1
1IE C8 S1 1
1IE C9 S1 1
1IE C10 S1 1
1IE C11 S1 1
1IE C12 S1 1
1IE C13 S1 1
1IE C14 S1 1
1IE C15 S1 1
1IE C16 S1 1
1IE C17 S1 1
1IE C18 S1 1
1IE C19 S1 1
1IE C2 S1 1
1IE C3 F1 1
1IE C2 F1 1
1IE C19 F1 1
1IE C6 F1 1
1IE C5 F1 1
1IE C4 F1 1
1IE C10 F1 2
1IE C15 F1 2
1IE C14 F1 2
1IE C13 F1 2
1IE C12 F1 2
1IE C11 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 1IE
_pdbe_chem_comp_rdkit_properties.exactmw 304.103
_pdbe_chem_comp_rdkit_properties.amw 304.418
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.053
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 156.049
_pdbe_chem_comp_rdkit_properties.tpsa 27.820
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.061
_pdbe_chem_comp_rdkit_properties.CrippenMR 91.820
_pdbe_chem_comp_rdkit_properties.chi0v 11.619
_pdbe_chem_comp_rdkit_properties.chi1v 6.869
_pdbe_chem_comp_rdkit_properties.chi2v 3.293
_pdbe_chem_comp_rdkit_properties.chi3v 3.293
_pdbe_chem_comp_rdkit_properties.chi4v 2.225
_pdbe_chem_comp_rdkit_properties.chi0n 26.803
_pdbe_chem_comp_rdkit_properties.chi1n 13.947
_pdbe_chem_comp_rdkit_properties.chi2n 2.885
_pdbe_chem_comp_rdkit_properties.chi3n 2.885
_pdbe_chem_comp_rdkit_properties.chi4n 1.976
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.390
_pdbe_chem_comp_rdkit_properties.kappa1 4.556
_pdbe_chem_comp_rdkit_properties.kappa2 5.427
_pdbe_chem_comp_rdkit_properties.kappa3 2.236
_pdbe_chem_comp_rdkit_properties.Phi 1.124
#
_pdbe_chem_comp_external_mappings.comp_id 1IE
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 168719746
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1IE N1 -0.383 -0.071 -1.849 ETKDGv3 1
1IE C1 3.757 0.568 1.850 ETKDGv3 2
1IE N2 -3.022 -0.639 1.508 ETKDGv3 3
1IE C3 3.870 -0.077 -1.483 ETKDGv3 4
1IE C4 3.225 0.387 -2.727 ETKDGv3 5
1IE C5 1.891 0.380 -2.836 ETKDGv3 6
1IE C6 1.050 -0.093 -1.710 ETKDGv3 7
1IE C7 -1.297 -0.220 -0.751 ETKDGv3 8
1IE C8 -2.220 -1.185 -0.780 ETKDGv3 9
1IE C9 -3.094 -1.428 0.325 ETKDGv3 10
1IE C10 -2.069 0.445 1.529 ETKDGv3 11
1IE C11 -1.992 1.320 2.721 ETKDGv3 12
1IE C12 -1.141 2.351 2.747 ETKDGv3 13
1IE C13 -0.285 2.635 1.581 ETKDGv3 14
1IE C14 -0.340 1.854 0.496 ETKDGv3 15
1IE C15 -1.250 0.678 0.458 ETKDGv3 16
1IE C16 -3.850 -2.485 0.085 ETKDGv3 17
1IE C17 -3.476 -2.982 -1.250 ETKDGv3 18
1IE C18 -2.508 -2.220 -1.762 ETKDGv3 19
1IE C19 1.647 -0.547 -0.590 ETKDGv3 20
1IE C2 3.121 -0.519 -0.465 ETKDGv3 21
1IE S1 3.892 -1.066 1.059 ETKDGv3 22
1IE H1 -0.782 -0.035 -2.814 ETKDGv3 23
1IE H2 4.318 1.324 1.262 ETKDGv3 24
1IE H3 2.690 0.869 1.924 ETKDGv3 25
1IE H4 4.187 0.513 2.871 ETKDGv3 26
1IE H5 -3.645 -0.833 2.324 ETKDGv3 27
1IE H6 4.950 -0.051 -1.400 ETKDGv3 28
1IE H7 3.835 0.739 -3.550 ETKDGv3 29
1IE H8 1.425 0.728 -3.749 ETKDGv3 30
1IE H9 -2.626 1.125 3.577 ETKDGv3 31
1IE H10 -1.088 2.989 3.620 ETKDGv3 32
1IE H11 0.382 3.488 1.601 ETKDGv3 33
1IE H12 0.277 2.103 -0.356 ETKDGv3 34
1IE H13 -4.580 -2.912 0.760 ETKDGv3 35
1IE H14 -3.905 -3.845 -1.742 ETKDGv3 36
1IE H15 -2.030 -2.363 -2.723 ETKDGv3 37
1IE H16 1.065 -0.927 0.239 ETKDGv3 38
#