data_1E1
#
_chem_comp.id 1E1
_chem_comp.name (2R,3S)-3-amino-4-cyclopropyl-2-hydroxybutanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H14 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-12-18
_chem_comp.pdbx_modified_date 2012-12-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 158.198
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1E1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2OBO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1E1 N26 N26 N 0 1 N N N N N N 196.607 -6.349 51.302 0.015 0.158 1.406 N26 1E1 1
1E1 C27 C27 C 0 1 N N S N N N 197.545 -5.291 50.925 0.040 0.371 -0.048 C27 1E1 2
1E1 C28 C28 C 0 1 N N N N N N 196.821 -4.131 50.234 1.330 -0.211 -0.627 C28 1E1 3
1E1 C29 C29 C 0 1 N N N N N N 196.040 -4.658 49.049 2.530 0.568 -0.084 C29 1E1 4
1E1 C30 C30 C 0 1 N N N N N N 196.669 -4.655 47.695 3.912 0.212 -0.635 C30 1E1 5
1E1 C31 C31 C 0 1 N N N N N N 195.529 -3.714 48.021 3.529 -0.193 0.790 C31 1E1 6
1E1 O32 O32 O 0 1 N N N N N N 198.739 -5.896 52.996 -1.108 -1.725 -0.408 O32 1E1 7
1E1 C33 C33 C 0 1 N N R N N N 198.297 -4.773 52.170 -1.165 -0.324 -0.685 C33 1E1 8
1E1 O34 O34 O 0 1 N N N N N N 199.318 -2.854 51.206 -3.172 -0.450 0.549 O34 1E1 9
1E1 N35 N35 N 0 1 N N N N N N 200.677 -4.546 51.823 -2.755 1.539 -0.342 N35 1E1 10
1E1 C36 C36 C 0 1 N N N N N N 199.485 -3.977 51.693 -2.436 0.249 -0.115 C36 1E1 11
1E1 H32 H32 H 0 1 N N N N N N 197.104 -7.092 51.750 0.055 -0.825 1.628 H32 1E1 12
1E1 H33 H33 H 0 1 N N N N N N 198.287 -5.700 50.224 -0.004 1.440 -0.259 H33 1E1 13
1E1 H34 H34 H 0 1 N N N N N N 197.559 -3.392 49.888 1.417 -1.259 -0.340 H34 1E1 14
1E1 H35 H35 H 0 1 N N N N N N 196.131 -3.654 50.945 1.309 -0.133 -1.714 H35 1E1 15
1E1 H36 H36 H 0 1 N N N N N N 195.391 -5.519 49.266 2.340 1.612 0.162 H36 1E1 16
1E1 H37 H37 H 0 1 N N N N N N 196.508 -5.500 47.010 3.967 -0.577 -1.385 H37 1E1 17
1E1 H38 H38 H 0 1 N N N N N N 197.688 -4.262 47.560 4.631 1.022 -0.752 H38 1E1 18
1E1 H39 H39 H 0 1 N N N N N N 195.717 -2.635 48.122 3.997 0.351 1.611 H39 1E1 19
1E1 H40 H40 H 0 1 N N N N N N 194.538 -3.873 47.571 3.332 -1.249 0.978 H40 1E1 20
1E1 H41 H41 H 0 1 N N N N N N 199.200 -5.567 53.759 -1.120 -1.940 0.534 H41 1E1 21
1E1 H42 H42 H 0 1 N N N N N N 197.626 -4.120 52.748 -1.147 -0.166 -1.764 H42 1E1 22
1E1 H43 H43 H 0 1 N N N N N N 201.498 -4.062 51.519 -3.574 1.908 0.025 H43 1E1 23
1E1 H44 H44 H 0 1 N N N N N N 200.754 -5.458 52.225 -2.167 2.098 -0.873 H44 1E1 24
1E1 H2 H2 H 0 1 N Y N N N N 195.923 -5.979 51.931 0.764 0.661 1.857 H2 1E1 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1E1 C30 C31 SING N N 1
1E1 C30 C29 SING N N 2
1E1 C31 C29 SING N N 3
1E1 C29 C28 SING N N 4
1E1 C28 C27 SING N N 5
1E1 C27 N26 SING N N 6
1E1 C27 C33 SING N N 7
1E1 O34 C36 DOUB N N 8
1E1 C36 N35 SING N N 9
1E1 C36 C33 SING N N 10
1E1 C33 O32 SING N N 11
1E1 N26 H32 SING N N 12
1E1 C27 H33 SING N N 13
1E1 C28 H34 SING N N 14
1E1 C28 H35 SING N N 15
1E1 C29 H36 SING N N 16
1E1 C30 H37 SING N N 17
1E1 C30 H38 SING N N 18
1E1 C31 H39 SING N N 19
1E1 C31 H40 SING N N 20
1E1 O32 H41 SING N N 21
1E1 C33 H42 SING N N 22
1E1 N35 H43 SING N N 23
1E1 N35 H44 SING N N 24
1E1 N26 H2 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1E1 SMILES ACDLabs 12.01 O=C(N)C(O)C(N)CC1CC1
1E1 InChI InChI 1.03 InChI=1S/C7H14N2O2/c8-5(3-4-1-2-4)6(10)7(9)11/h4-6,10H,1-3,8H2,(H2,9,11)/t5-,6+/m0/s1
1E1 InChIKey InChI 1.03 NONOXCXVTONWED-NTSWFWBYSA-N
1E1 SMILES_CANONICAL CACTVS 3.370 N[C@@H](CC1CC1)[C@@H](O)C(N)=O
1E1 SMILES CACTVS 3.370 N[CH](CC1CC1)[CH](O)C(N)=O
1E1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C1CC1C[C@@H]([C@H](C(=O)N)O)N
1E1 SMILES "OpenEye OEToolkits" 1.7.6 C1CC1CC(C(C(=O)N)O)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1E1 "SYSTEMATIC NAME" ACDLabs 12.01 (2R,3S)-3-amino-4-cyclopropyl-2-hydroxybutanamide
1E1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2R,3S)-3-azanyl-4-cyclopropyl-2-oxidanyl-butanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1E1 'Create component' 2012-12-18 RCSB
1E1 'Initial release' 2012-12-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1E1 N26 N -0.032 1.518 1
1E1 C27 C -0.032 0.018 2
1E1 C28 C -1.331 -0.732 3
1E1 C29 C -2.630 0.018 4
1E1 C30 C -4.130 0.018 5
1E1 C31 C -3.380 1.317 6
1E1 O32 O 1.267 -2.232 7
1E1 C33 C 1.267 -0.732 8
1E1 O34 O 2.566 1.518 9
1E1 N35 N 3.865 -0.732 10
1E1 C36 C 2.566 0.018 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1E1 C30 C31 SINGLE NONE 1
1E1 C30 C29 SINGLE NONE 2
1E1 C31 C29 SINGLE NONE 3
1E1 C29 C28 SINGLE NONE 4
1E1 C28 C27 SINGLE NONE 5
1E1 C27 N26 SINGLE BEGINDASH 6
1E1 C27 C33 SINGLE NONE 7
1E1 O34 C36 DOUBLE NONE 8
1E1 C36 N35 SINGLE NONE 9
1E1 C36 C33 SINGLE NONE 10
1E1 C33 O32 SINGLE BEGINDASH 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1E1 MurckoScaffold S1 scaffold C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
1E1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1E1 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1E1 C29 S1 1
1E1 C30 S1 1
1E1 C31 S1 1
1E1 N35 F1 1
1E1 C36 F1 1
1E1 O34 F1 1
1E1 C33 F1 1
1E1 C29 F2 1
1E1 C30 F2 1
1E1 C31 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1E1
_pdbe_chem_comp_rdkit_properties.exactmw 158.106
_pdbe_chem_comp_rdkit_properties.amw 158.201
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 85.547
_pdbe_chem_comp_rdkit_properties.tpsa 89.340
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.040
_pdbe_chem_comp_rdkit_properties.CrippenMR 40.518
_pdbe_chem_comp_rdkit_properties.chi0v 5.211
_pdbe_chem_comp_rdkit_properties.chi1v 2.605
_pdbe_chem_comp_rdkit_properties.chi2v 0.903
_pdbe_chem_comp_rdkit_properties.chi3v 0.903
_pdbe_chem_comp_rdkit_properties.chi4v 0.370
_pdbe_chem_comp_rdkit_properties.chi0n 19.211
_pdbe_chem_comp_rdkit_properties.chi1n 9.303
_pdbe_chem_comp_rdkit_properties.chi2n 0.903
_pdbe_chem_comp_rdkit_properties.chi3n 0.903
_pdbe_chem_comp_rdkit_properties.chi4n 0.370
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.610
_pdbe_chem_comp_rdkit_properties.kappa1 1.540
_pdbe_chem_comp_rdkit_properties.kappa2 3.192
_pdbe_chem_comp_rdkit_properties.kappa3 2.476
_pdbe_chem_comp_rdkit_properties.Phi 0.447
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1E1 N26 -0.151 -1.822 -0.599 ETKDGv3 1
1E1 C27 0.271 -0.461 -0.947 ETKDGv3 2
1E1 C28 -0.453 0.567 -0.052 ETKDGv3 3
1E1 C29 -1.968 0.548 -0.310 ETKDGv3 4
1E1 C30 -2.804 1.197 0.783 ETKDGv3 5
1E1 C31 -2.795 -0.316 0.630 ETKDGv3 6
1E1 O32 2.181 0.946 -1.415 ETKDGv3 7
1E1 C33 1.816 -0.314 -0.910 ETKDGv3 8
1E1 O34 2.778 -1.658 0.826 ETKDGv3 9
1E1 N35 2.489 0.577 1.393 ETKDGv3 10
1E1 C36 2.392 -0.511 0.472 ETKDGv3 11
1E1 H32 0.141 -2.045 0.380 ETKDGv3 12
1E1 H33 -0.044 -0.270 -1.998 ETKDGv3 13
1E1 H34 -0.087 1.588 -0.290 ETKDGv3 14
1E1 H35 -0.224 0.367 1.017 ETKDGv3 15
1E1 H36 -2.366 0.681 -1.339 ETKDGv3 16
1E1 H37 -2.251 1.562 1.675 ETKDGv3 17
1E1 H38 -3.739 1.677 0.425 ETKDGv3 18
1E1 H39 -3.720 -0.730 0.177 ETKDGv3 19
1E1 H40 -2.235 -0.848 1.429 ETKDGv3 20
1E1 H41 3.152 0.904 -1.621 ETKDGv3 21
1E1 H42 2.241 -1.097 -1.581 ETKDGv3 22
1E1 H43 2.171 1.536 1.130 ETKDGv3 23
1E1 H44 2.880 0.422 2.349 ETKDGv3 24
1E1 H2 0.324 -2.502 -1.236 ETKDGv3 25
#