data_1BO
#
_chem_comp.id 1BO
_chem_comp.name 1-BUTANOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C4 H10 O'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms BUTAN-1-OL
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-11-07
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 74.122
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1BO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1G4H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1BO C1 C1 C 0 1 N N N N N N 9.149 27.115 27.350 -0.317 0.000 2.550 C1 1BO 1
1BO C2 C2 C 0 1 N N N N N N 8.963 25.902 26.423 0.542 0.000 1.285 C2 1BO 2
1BO C3 C3 C 0 1 N N N N N N 7.468 25.526 26.368 -0.363 0.000 0.052 C3 1BO 3
1BO C4 C4 C 0 1 N N N N N N 7.307 24.163 25.673 0.496 0.000 -1.212 C4 1BO 4
1BO OH OH O 0 1 N N N N N N 7.061 24.357 24.274 -0.349 0.000 -2.364 OH 1BO 5
1BO H11 1H1 H 0 1 N N N N N N 10.229 27.386 27.389 0.327 0.000 3.428 H11 1BO 6
1BO H12 2H1 H 0 1 N N N N N N 8.507 27.976 27.051 -0.947 0.890 2.562 H12 1BO 7
1BO H13 3H1 H 0 1 N N N N N N 8.719 26.941 28.364 -0.947 -0.890 2.562 H13 1BO 8
1BO H21 1H2 H 0 1 N N N N N N 9.392 26.075 25.408 1.171 0.890 1.273 H21 1BO 9
1BO H22 2H2 H 0 1 N N N N N N 9.604 25.040 26.721 1.171 -0.890 1.273 H22 1BO 10
1BO H31 1H3 H 0 1 N N N N N N 6.991 25.543 27.376 -0.992 -0.890 0.064 H31 1BO 11
1BO H32 2H3 H 0 1 N N N N N N 6.851 26.320 25.886 -0.992 0.890 0.064 H32 1BO 12
1BO H41 1H4 H 0 1 N N N N N N 8.179 23.493 25.856 1.126 0.890 -1.224 H41 1BO 13
1BO H42 2H4 H 0 1 N N N N N N 6.519 23.537 26.154 1.126 -0.890 -1.224 H42 1BO 14
1BO HO HO H 0 1 N N N N N N 6.961 23.515 23.844 0.231 0.000 -3.137 HO 1BO 15
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1BO C1 C2 SING N N 1
1BO C1 H11 SING N N 2
1BO C1 H12 SING N N 3
1BO C1 H13 SING N N 4
1BO C2 C3 SING N N 5
1BO C2 H21 SING N N 6
1BO C2 H22 SING N N 7
1BO C3 C4 SING N N 8
1BO C3 H31 SING N N 9
1BO C3 H32 SING N N 10
1BO C4 OH SING N N 11
1BO C4 H41 SING N N 12
1BO C4 H42 SING N N 13
1BO OH HO SING N N 14
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1BO SMILES ACDLabs 10.04 OCCCC
1BO SMILES_CANONICAL CACTVS 3.341 CCCCO
1BO SMILES CACTVS 3.341 CCCCO
1BO SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 CCCCO
1BO SMILES 'OpenEye OEToolkits' 1.5.0 CCCCO
1BO InChI InChI 1.03 InChI=1S/C4H10O/c1-2-3-4-5/h5H,2-4H2,1H3
1BO InChIKey InChI 1.03 LRHPLDYGYMQRHN-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1BO 'SYSTEMATIC NAME' ACDLabs 10.04 butan-1-ol
1BO 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 butan-1-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1BO 'Create component' 2000-11-07 RCSB
1BO 'Modify descriptor' 2011-06-04 RCSB
1BO 'Modify synonyms' 2021-03-01 PDBE
1BO 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 1BO
_pdbx_chem_comp_synonyms.name BUTAN-1-OL
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 1BO CYS None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' C2 SG ? ?
2 1BO LYS None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' C4 NZ ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id 1BO
_pdbe_chem_comp_drugbank_details.drugbank_id DB02145
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Butyl alcohol'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 71-36-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
1BO BUTAN-1-OL wwPDB ?
1BO 1-butanol DrugBank ?
1BO Butan-1-ol DrugBank ?
1BO Butanol DrugBank ?
1BO 'Butyl alcohol' DrugBank ?
1BO N-butanol DrugBank ?
1BO 'N-butyl alcohol' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 1BO
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02145
_pdbe_chem_comp_drugbank_classification.parent 'Primary alcohols'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as primary alcohols. These are compounds comprising the primary alcohol functional group, with the general structure RCOH (R=alkyl, aryl).'
#
_pdbe_chem_comp_drugbank_targets.comp_id 1BO
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02145
_pdbe_chem_comp_drugbank_targets.name 'Haloalkane dehalogenase'
_pdbe_chem_comp_drugbank_targets.organism
'Sphingobium indicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S)'
_pdbe_chem_comp_drugbank_targets.uniprot_id D4Z2G1
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1BO C1 C 3.805 -0.375 1
1BO C2 C 5.104 0.375 2
1BO C3 C 6.404 -0.375 3
1BO C4 C 7.702 0.375 4
1BO OH O 9.002 -0.375 5
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1BO C1 C2 SINGLE NONE 1
1BO C2 C3 SINGLE NONE 2
1BO C3 C4 SINGLE NONE 3
1BO C4 OH SINGLE NONE 4
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id 1BO
_pdbe_chem_comp_rdkit_properties.exactmw 74.073
_pdbe_chem_comp_rdkit_properties.amw 74.123
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 5
_pdbe_chem_comp_rdkit_properties.NumAtoms 15
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 46.765
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.779
_pdbe_chem_comp_rdkit_properties.CrippenMR 21.994
_pdbe_chem_comp_rdkit_properties.chi0v 2.408
_pdbe_chem_comp_rdkit_properties.chi1v 0.954
_pdbe_chem_comp_rdkit_properties.chi2v 0.114
_pdbe_chem_comp_rdkit_properties.chi3v 0.114
_pdbe_chem_comp_rdkit_properties.chi4v 0.026
_pdbe_chem_comp_rdkit_properties.chi0n 12.408
_pdbe_chem_comp_rdkit_properties.chi1n 5.862
_pdbe_chem_comp_rdkit_properties.chi2n 0.114
_pdbe_chem_comp_rdkit_properties.chi3n 0.114
_pdbe_chem_comp_rdkit_properties.chi4n 0.026
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.040
_pdbe_chem_comp_rdkit_properties.kappa1 0.399
_pdbe_chem_comp_rdkit_properties.kappa2 3.960
_pdbe_chem_comp_rdkit_properties.kappa3 3.960
_pdbe_chem_comp_rdkit_properties.Phi 0.316
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1BO UniChem DrugBank DB02145
1BO UniChem 'KEGG LIGAND' C06142
1BO UniChem ChEBI 28885
1BO UniChem ZINC ZINC000001530354
1BO UniChem eMolecules 483535
1BO UniChem fdasrs 8PJ61P6TS3
1BO UniChem HMDB HMDB0004327
1BO UniChem 'PubChem TPHARMA' 15218624
1BO UniChem NMRShiftDB 10016622
1BO UniChem ACTor 35296-72-1
1BO UniChem ACTor 71-36-3
1BO UniChem Nikkaji J2.374D
1BO UniChem BindingDb 36173
1BO UniChem 'EPA CompTox Dashboard' DTXSID1021740
1BO UniChem LipidMaps LMFA05000109
1BO UniChem MetaboLights MTBLC28885
1BO UniChem BRENDA 177988
1BO UniChem BRENDA 218114
1BO UniChem BRENDA 2646
1BO UniChem BRENDA 29828
1BO UniChem BRENDA 556
1BO UniChem BRENDA 626
1BO UniChem BRENDA 629
1BO UniChem BRENDA 92807
1BO UniChem Rhea 28885
1BO UniChem ChemicalBook CB81124554
1BO UniChem ChemicalBook CB9113046
1BO UniChem ClinicalTrials 1-BUTANOL
1BO UniChem ClinicalTrials 'BUTYL ALCOHOL'
1BO UniChem ClinicalTrials 'N-BUTYL ALCOHOL'
1BO UniChem rxnorm 'BUTYL ALCOHOL'
1BO UniChem 'Probes And Drugs' PD008514
1BO UniChem ACTor 107569-51-7
1BO UniChem SureChEMBL SCHEMBL532
1BO UniChem PubChem 263
1BO UniChem Mcule MCULE-1571156443
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1BO C1 2.058 -0.444 -0.103 ETKDGv3 1
1BO C2 0.687 -0.127 -0.692 ETKDGv3 2
1BO C3 -0.304 0.287 0.404 ETKDGv3 3
1BO C4 -1.678 0.637 -0.176 ETKDGv3 4
1BO OH -2.264 -0.482 -0.787 ETKDGv3 5
1BO H11 2.753 -0.741 -0.917 ETKDGv3 6
1BO H12 1.982 -1.282 0.622 ETKDGv3 7
1BO H13 2.474 0.449 0.411 ETKDGv3 8
1BO H21 0.309 -1.027 -1.223 ETKDGv3 9
1BO H22 0.795 0.698 -1.430 ETKDGv3 10
1BO H31 -0.416 -0.538 1.142 ETKDGv3 11
1BO H32 0.091 1.178 0.940 ETKDGv3 12
1BO H41 -1.571 1.445 -0.931 ETKDGv3 13
1BO H42 -2.338 1.020 0.634 ETKDGv3 14
1BO HO -2.578 -1.073 -0.054 ETKDGv3 15
#