data_17X
#
_chem_comp.id 17X
_chem_comp.name
"(2S)-2-(2-phenyl-1H-benzimidazol-1-yl)-2-(piperidin-4-yl)ethyl 1-(1-benzyl-1H-benzimidazol-2-yl)piperidine-4-carboxylate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H42 N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-03-26
_chem_comp.pdbx_modified_date 2013-05-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 638.800
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 17X
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4JVF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
17X CAI CAI C 0 1 Y N N N N N -31.095 10.029 -4.490 3.895 2.507 -0.320 CAI 17X 1
17X CAJ CAJ C 0 1 Y N N N N N -31.882 10.992 -3.846 3.664 3.348 -1.392 CAJ 17X 2
17X CAK CAK C 0 1 Y N N N N N -32.550 10.699 -2.674 4.728 3.862 -2.109 CAK 17X 3
17X CAL CAL C 0 1 Y N N N N N -32.421 9.418 -2.180 6.024 3.535 -1.754 CAL 17X 4
17X CAM CAM C 0 1 Y N N N N N -31.644 8.458 -2.832 6.255 2.694 -0.681 CAM 17X 5
17X CAH CAH C 0 1 Y N N N N N -30.970 8.765 -3.996 5.190 2.179 0.035 CAH 17X 6
17X CAG CAG C 0 1 N N N N N N -30.189 7.803 -4.633 5.442 1.262 1.204 CAG 17X 7
17X NAD NAD N 0 1 Y N N N N N -30.160 7.939 -6.124 5.481 -0.126 0.735 NAD 17X 8
17X CAC CAC C 0 1 Y N N N N N -29.217 8.642 -6.772 6.597 -0.810 0.284 CAC 17X 9
17X CAF CAF C 0 1 Y N N N N N -28.210 9.401 -6.322 7.933 -0.473 0.128 CAF 17X 10
17X CAE CAE C 0 1 Y N N N N N -27.344 10.071 -7.199 8.825 -1.407 -0.360 CAE 17X 11
17X CAX CAX C 0 1 Y N N N N N -27.586 9.957 -8.570 8.393 -2.681 -0.696 CAX 17X 12
17X CAW CAW C 0 1 Y N N N N N -28.686 9.177 -8.987 7.070 -3.033 -0.548 CAW 17X 13
17X CAV CAV C 0 1 Y N N N N N -29.456 8.547 -8.085 6.155 -2.100 -0.055 CAV 17X 14
17X NAY NAY N 0 1 Y N N N N N -30.520 7.760 -8.255 4.821 -2.144 0.198 NAY 17X 15
17X CAB CAB C 0 1 Y N N N N N -30.939 7.381 -7.065 4.423 -0.988 0.668 CAB 17X 16
17X NAA NAA N 0 1 N N N N N N -32.032 6.603 -6.923 3.129 -0.683 1.031 NAA 17X 17
17X CAR CAR C 0 1 N N N N N N -33.079 6.949 -5.925 2.200 -0.922 -0.081 CAR 17X 18
17X CAQ CAQ C 0 1 N N N N N N -33.627 5.692 -5.245 0.801 -0.437 0.308 CAQ 17X 19
17X CAN CAN C 0 1 N N N N N N -32.282 5.453 -7.854 2.728 -1.432 2.228 CAN 17X 20
17X CAO CAO C 0 1 N N N N N N -32.863 4.218 -7.131 1.345 -0.963 2.687 CAO 17X 21
17X CAP CAP C 0 1 N N N N N N -34.060 4.569 -6.251 0.335 -1.190 1.558 CAP 17X 22
17X CAS CAS C 0 1 N N N N N N -34.488 3.314 -5.445 -1.017 -0.675 1.981 CAS 17X 23
17X OAT OAT O 0 1 N N N N N N -34.047 3.114 -4.317 -1.159 -0.177 3.073 OAT 17X 24
17X OAU OAU O 0 1 N N N N N N -35.320 2.392 -6.003 -2.062 -0.768 1.145 OAU 17X 25
17X CBP CBP C 0 1 N N N N N N -36.704 2.598 -5.918 -3.334 -0.252 1.618 CBP 17X 26
17X CBO CBO C 0 1 N N S N N N -37.450 2.008 -4.732 -4.398 -0.445 0.536 CBO 17X 27
17X CBQ CBQ C 0 1 N N N N N N -38.866 2.286 -5.238 -4.445 -1.917 0.124 CBQ 17X 28
17X CBR CBR C 0 1 N N N N N N -39.911 2.160 -4.161 -5.595 -2.136 -0.862 CBR 17X 29
17X CBS CBS C 0 1 N N N N N N -41.130 2.840 -4.755 -5.675 -3.621 -1.224 CBS 17X 30
17X NBV NBV N 0 1 N N N N N N -41.624 2.011 -5.867 -5.893 -4.412 -0.006 NBV 17X 31
17X CBT CBT C 0 1 N N N N N N -40.635 1.592 -6.891 -4.778 -4.255 0.936 CBT 17X 32
17X CBU CBU C 0 1 N N N N N N -39.203 1.410 -6.431 -4.671 -2.789 1.362 CBU 17X 33
17X NBH NBH N 0 1 Y N N N N N -37.083 2.866 -3.481 -4.065 0.379 -0.629 NBH 17X 34
17X CBD CBD C 0 1 Y N N N N N -37.011 4.213 -3.476 -3.705 -0.080 -1.881 CBD 17X 35
17X CBE CBE C 0 1 Y N N N N N -37.212 5.110 -4.452 -3.545 -1.343 -2.435 CBE 17X 36
17X CAZ CAZ C 0 1 Y N N N N N -37.012 6.474 -4.191 -3.166 -1.467 -3.755 CAZ 17X 37
17X CBA CBA C 0 1 Y N N N N N -36.615 6.914 -2.923 -2.944 -0.339 -4.532 CBA 17X 38
17X CBB CBB C 0 1 Y N N N N N -36.413 5.954 -1.943 -3.097 0.912 -4.005 CBB 17X 39
17X CBC CBC C 0 1 Y N N N N N -36.618 4.651 -2.247 -3.481 1.063 -2.668 CBC 17X 40
17X NBF NBF N 0 1 Y N N N N N -36.487 3.599 -1.483 -3.708 2.142 -1.881 NBF 17X 41
17X CBG CBG C 0 1 Y N N N N N -36.760 2.520 -2.230 -4.057 1.746 -0.681 CBG 17X 42
17X CBI CBI C 0 1 Y N N N N N -36.725 1.293 -1.671 -4.389 2.643 0.447 CBI 17X 43
17X CBJ CBJ C 0 1 Y N N N N N -35.607 0.902 -0.873 -3.760 3.883 0.565 CBJ 17X 44
17X CBK CBK C 0 1 Y N N N N N -35.608 -0.387 -0.259 -4.075 4.715 1.620 CBK 17X 45
17X CBL CBL C 0 1 Y N N N N N -36.702 -1.263 -0.418 -5.011 4.322 2.559 CBL 17X 46
17X CBM CBM C 0 1 Y N N N N N -37.807 -0.849 -1.181 -5.638 3.094 2.448 CBM 17X 47
17X CBN CBN C 0 1 Y N N N N N -37.830 0.421 -1.784 -5.337 2.255 1.395 CBN 17X 48
17X H1 H1 H 0 1 N N N N N N -30.575 10.294 -5.399 3.064 2.109 0.243 H1 17X 49
17X H2 H2 H 0 1 N N N N N N -31.968 11.980 -4.273 2.652 3.603 -1.670 H2 17X 50
17X H3 H3 H 0 1 N N N N N N -33.148 11.441 -2.166 4.548 4.519 -2.947 H3 17X 51
17X H4 H4 H 0 1 N N N N N N -32.933 9.151 -1.267 6.855 3.937 -2.314 H4 17X 52
17X H5 H5 H 0 1 N N N N N N -31.570 7.463 -2.420 7.267 2.439 -0.403 H5 17X 53
17X H6 H6 H 0 1 N N N N N N -30.590 6.810 -4.383 6.396 1.515 1.666 H6 17X 54
17X H7 H7 H 0 1 N N N N N N -29.159 7.888 -4.257 4.642 1.376 1.935 H7 17X 55
17X H8 H8 H 0 1 N N N N N N -28.061 9.500 -5.257 8.276 0.518 0.387 H8 17X 56
17X H9 H9 H 0 1 N N N N N N -26.517 10.656 -6.826 9.865 -1.143 -0.482 H9 17X 57
17X H10 H10 H 0 1 N N N N N N -26.950 10.451 -9.290 9.100 -3.403 -1.078 H10 17X 58
17X H11 H11 H 0 1 N N N N N N -28.910 9.086 -10.040 6.741 -4.027 -0.812 H11 17X 59
17X H12 H12 H 0 1 N N N N N N -32.643 7.610 -5.161 2.540 -0.378 -0.962 H12 17X 60
17X H13 H13 H 0 1 N N N N N N -33.903 7.470 -6.434 2.166 -1.988 -0.303 H13 17X 61
17X H14 H14 H 0 1 N N N N N N -34.503 5.976 -4.644 0.831 0.632 0.517 H14 17X 62
17X H15 H15 H 0 1 N N N N N N -32.846 5.285 -4.586 0.109 -0.628 -0.512 H15 17X 63
17X H16 H16 H 0 1 N N N N N N -31.330 5.169 -8.326 2.692 -2.497 1.995 H16 17X 64
17X H17 H17 H 0 1 N N N N N N -32.994 5.775 -8.628 3.452 -1.260 3.025 H17 17X 65
17X H18 H18 H 0 1 N N N N N N -33.182 3.484 -7.886 1.041 -1.531 3.566 H18 17X 66
17X H19 H19 H 0 1 N N N N N N -32.078 3.776 -6.500 1.384 0.098 2.933 H19 17X 67
17X H20 H20 H 0 1 N N N N N N -34.898 4.924 -6.868 0.266 -2.255 1.339 H20 17X 68
17X H21 H21 H 0 1 N N N N N N -36.871 3.685 -5.899 -3.631 -0.788 2.520 H21 17X 69
17X H22 H22 H 0 1 N N N N N N -37.153 2.174 -6.828 -3.233 0.810 1.844 H22 17X 70
17X H23 H23 H 0 1 N N N N N N -37.249 0.937 -4.583 -5.371 -0.146 0.926 H23 17X 71
17X H24 H24 H 0 1 N N N N N N -38.883 3.329 -5.588 -3.502 -2.193 -0.349 H24 17X 72
17X H25 H25 H 0 1 N N N N N N -40.121 1.103 -3.941 -6.533 -1.823 -0.403 H25 17X 73
17X H26 H26 H 0 1 N N N N N N -39.588 2.669 -3.241 -5.418 -1.550 -1.764 H26 17X 74
17X H27 H27 H 0 1 N N N N N N -40.855 3.838 -5.128 -6.503 -3.783 -1.915 H27 17X 75
17X H28 H28 H 0 1 N N N N N N -41.912 2.938 -3.988 -4.742 -3.931 -1.696 H28 17X 76
17X H29 H29 H 0 1 N N N N N N -42.340 2.530 -6.334 -6.044 -5.385 -0.229 H29 17X 77
17X H31 H31 H 0 1 N N N N N N -40.634 2.355 -7.683 -4.953 -4.876 1.814 H31 17X 78
17X H32 H32 H 0 1 N N N N N N -40.974 0.632 -7.307 -3.849 -4.561 0.454 H32 17X 79
17X H33 H33 H 0 1 N N N N N N -39.053 0.357 -6.151 -3.834 -2.670 2.049 H33 17X 80
17X H34 H34 H 0 1 N N N N N N -38.529 1.668 -7.261 -5.594 -2.486 1.857 H34 17X 81
17X H35 H35 H 0 1 N N N N N N -37.526 4.785 -5.433 -3.716 -2.224 -1.834 H35 17X 82
17X H36 H36 H 0 1 N N N N N N -37.167 7.195 -4.980 -3.041 -2.449 -4.187 H36 17X 83
17X H37 H37 H 0 1 N N N N N N -36.471 7.964 -2.715 -2.647 -0.451 -5.564 H37 17X 84
17X H38 H38 H 0 1 N N N N N N -36.097 6.242 -0.951 -2.921 1.783 -4.619 H38 17X 85
17X H39 H39 H 0 1 N N N N N N -34.772 1.573 -0.736 -3.029 4.191 -0.167 H39 17X 86
17X H40 H40 H 0 1 N N N N N N -34.760 -0.695 0.335 -3.589 5.675 1.713 H40 17X 87
17X H41 H41 H 0 1 N N N N N N -36.691 -2.240 0.041 -5.254 4.977 3.383 H41 17X 88
17X H42 H42 H 0 1 N N N N N N -38.649 -1.514 -1.306 -6.368 2.792 3.185 H42 17X 89
17X H43 H43 H 0 1 N N N N N N -38.702 0.733 -2.340 -5.830 1.298 1.307 H43 17X 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
17X CAW CAX DOUB Y N 1
17X CAW CAV SING Y N 2
17X CAX CAE SING Y N 3
17X NAY CAV SING Y N 4
17X NAY CAB DOUB Y N 5
17X CAV CAC DOUB Y N 6
17X CAN CAO SING N N 7
17X CAN NAA SING N N 8
17X CAE CAF DOUB Y N 9
17X CAO CAP SING N N 10
17X CAB NAA SING N N 11
17X CAB NAD SING Y N 12
17X NAA CAR SING N N 13
17X CBT CBU SING N N 14
17X CBT NBV SING N N 15
17X CAC CAF SING Y N 16
17X CAC NAD SING Y N 17
17X CBU CBQ SING N N 18
17X CAP CAS SING N N 19
17X CAP CAQ SING N N 20
17X NAD CAG SING N N 21
17X OAU CBP SING N N 22
17X OAU CAS SING N N 23
17X CAR CAQ SING N N 24
17X CBP CBO SING N N 25
17X NBV CBS SING N N 26
17X CAS OAT DOUB N N 27
17X CBQ CBO SING N N 28
17X CBQ CBR SING N N 29
17X CBS CBR SING N N 30
17X CBO NBH SING N N 31
17X CAG CAH SING N N 32
17X CAI CAH DOUB Y N 33
17X CAI CAJ SING Y N 34
17X CBE CAZ DOUB Y N 35
17X CBE CBD SING Y N 36
17X CAZ CBA SING Y N 37
17X CAH CAM SING Y N 38
17X CAJ CAK DOUB Y N 39
17X NBH CBD SING Y N 40
17X NBH CBG SING Y N 41
17X CBD CBC DOUB Y N 42
17X CBA CBB DOUB Y N 43
17X CAM CAL DOUB Y N 44
17X CAK CAL SING Y N 45
17X CBC CBB SING Y N 46
17X CBC NBF SING Y N 47
17X CBG CBI SING N N 48
17X CBG NBF DOUB Y N 49
17X CBN CBI DOUB Y N 50
17X CBN CBM SING Y N 51
17X CBI CBJ SING Y N 52
17X CBM CBL DOUB Y N 53
17X CBJ CBK DOUB Y N 54
17X CBL CBK SING Y N 55
17X CAI H1 SING N N 56
17X CAJ H2 SING N N 57
17X CAK H3 SING N N 58
17X CAL H4 SING N N 59
17X CAM H5 SING N N 60
17X CAG H6 SING N N 61
17X CAG H7 SING N N 62
17X CAF H8 SING N N 63
17X CAE H9 SING N N 64
17X CAX H10 SING N N 65
17X CAW H11 SING N N 66
17X CAR H12 SING N N 67
17X CAR H13 SING N N 68
17X CAQ H14 SING N N 69
17X CAQ H15 SING N N 70
17X CAN H16 SING N N 71
17X CAN H17 SING N N 72
17X CAO H18 SING N N 73
17X CAO H19 SING N N 74
17X CAP H20 SING N N 75
17X CBP H21 SING N N 76
17X CBP H22 SING N N 77
17X CBO H23 SING N N 78
17X CBQ H24 SING N N 79
17X CBR H25 SING N N 80
17X CBR H26 SING N N 81
17X CBS H27 SING N N 82
17X CBS H28 SING N N 83
17X NBV H29 SING N N 84
17X CBT H31 SING N N 85
17X CBT H32 SING N N 86
17X CBU H33 SING N N 87
17X CBU H34 SING N N 88
17X CBE H35 SING N N 89
17X CAZ H36 SING N N 90
17X CBA H37 SING N N 91
17X CBB H38 SING N N 92
17X CBJ H39 SING N N 93
17X CBK H40 SING N N 94
17X CBL H41 SING N N 95
17X CBM H42 SING N N 96
17X CBN H43 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
17X SMILES ACDLabs 12.01 O=C(OCC(n2c3ccccc3nc2c1ccccc1)C4CCNCC4)C8CCN(c5nc7c(n5Cc6ccccc6)cccc7)CC8
17X InChI InChI 1.03 InChI=1S/C40H42N6O2/c47-39(32-21-25-44(26-22-32)40-43-33-15-7-9-17-35(33)45(40)27-29-11-3-1-4-12-29)48-28-37(30-19-23-41-24-20-30)46-36-18-10-8-16-34(36)42-38(46)31-13-5-2-6-14-31/h1-18,30,32,37,41H,19-28H2/t37-/m1/s1
17X InChIKey InChI 1.03 WDALFJYWTFDSRP-DIPNUNPCSA-N
17X SMILES_CANONICAL CACTVS 3.370 O=C(OC[C@H](C1CCNCC1)n2c3ccccc3nc2c4ccccc4)C5CCN(CC5)c6nc7ccccc7n6Cc8ccccc8
17X SMILES CACTVS 3.370 O=C(OC[CH](C1CCNCC1)n2c3ccccc3nc2c4ccccc4)C5CCN(CC5)c6nc7ccccc7n6Cc8ccccc8
17X SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)Cn2c3ccccc3nc2N4CCC(CC4)C(=O)OC[C@H](C5CCNCC5)n6c7ccccc7nc6c8ccccc8
17X SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)Cn2c3ccccc3nc2N4CCC(CC4)C(=O)OCC(C5CCNCC5)n6c7ccccc7nc6c8ccccc8
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
17X "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-(2-phenyl-1H-benzimidazol-1-yl)-2-(piperidin-4-yl)ethyl 1-(1-benzyl-1H-benzimidazol-2-yl)piperidine-4-carboxylate"
17X "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S)-2-(2-phenylbenzimidazol-1-yl)-2-piperidin-4-yl-ethyl] 1-[1-(phenylmethyl)benzimidazol-2-yl]piperidine-4-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
17X 'Create component' 2013-03-26 RCSB
17X 'Initial release' 2013-05-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
17X CAI C 10.373 7.193 1
17X CAJ C 9.623 8.492 2
17X CAK C 8.123 8.492 3
17X CAL C 7.373 7.193 4
17X CAM C 8.123 5.894 5
17X CAH C 9.623 5.894 6
17X CAG C 10.373 4.595 7
17X NAD N 11.873 4.595 8
17X CAC C 12.749 5.802 9
17X CAF C 12.440 7.270 10
17X CAE C 13.556 8.272 11
17X CAX C 14.982 7.806 12
17X CAW C 15.291 6.338 13
17X CAV C 14.175 5.336 14
17X NAY N 14.168 3.845 15
17X CAB C 12.749 3.388 16
17X NAA N 12.283 1.962 17
17X CAR C 10.815 1.653 18
17X CAQ C 10.349 0.227 19
17X CAN C 13.285 0.846 20
17X CAO C 12.819 -0.580 21
17X CAP C 11.351 -0.889 22
17X CAS C 10.885 -2.315 23
17X OAT O 11.887 -3.431 24
17X OAU O 9.417 -2.624 25
17X CBP C 8.951 -4.050 26
17X CBO C 7.483 -4.359 27
17X CBQ C 6.482 -3.243 28
17X CBR C 5.014 -3.552 29
17X CBS C 4.012 -2.436 30
17X NBV N 4.478 -1.010 31
17X CBT C 5.946 -0.701 32
17X CBU C 6.948 -1.817 33
17X NBH N 7.018 -5.785 34
17X CBD C 5.598 -6.242 35
17X CBE C 4.299 -5.492 36
17X CAZ C 3.000 -6.242 37
17X CBA C 3.000 -7.742 38
17X CBB C 4.299 -8.492 39
17X CBC C 5.598 -7.742 40
17X NBF N 7.018 -8.200 41
17X CBG C 7.893 -6.992 42
17X CBI C 9.393 -6.992 43
17X CBJ C 10.143 -5.693 44
17X CBK C 11.643 -5.693 45
17X CBL C 12.393 -6.992 46
17X CBM C 11.643 -8.291 47
17X CBN C 10.143 -8.291 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
17X CAW CAX DOUBLE NONE 1
17X CAW CAV SINGLE NONE 2
17X CAX CAE SINGLE NONE 3
17X NAY CAV SINGLE NONE 4
17X NAY CAB DOUBLE NONE 5
17X CAV CAC DOUBLE NONE 6
17X CAN CAO SINGLE NONE 7
17X CAN NAA SINGLE NONE 8
17X CAE CAF DOUBLE NONE 9
17X CAO CAP SINGLE NONE 10
17X CAB NAA SINGLE NONE 11
17X CAB NAD SINGLE NONE 12
17X NAA CAR SINGLE NONE 13
17X CBT CBU SINGLE NONE 14
17X CBT NBV SINGLE NONE 15
17X CAC CAF SINGLE NONE 16
17X CAC NAD SINGLE NONE 17
17X CBU CBQ SINGLE NONE 18
17X CAP CAS SINGLE NONE 19
17X CAP CAQ SINGLE NONE 20
17X NAD CAG SINGLE NONE 21
17X OAU CBP SINGLE NONE 22
17X OAU CAS SINGLE NONE 23
17X CAR CAQ SINGLE NONE 24
17X CBO CBP SINGLE BEGINWEDGE 25
17X NBV CBS SINGLE NONE 26
17X CAS OAT DOUBLE NONE 27
17X CBQ CBO SINGLE NONE 28
17X CBQ CBR SINGLE NONE 29
17X CBS CBR SINGLE NONE 30
17X CBO NBH SINGLE NONE 31
17X CAG CAH SINGLE NONE 32
17X CAI CAH DOUBLE NONE 33
17X CAI CAJ SINGLE NONE 34
17X CBE CAZ DOUBLE NONE 35
17X CBE CBD SINGLE NONE 36
17X CAZ CBA SINGLE NONE 37
17X CAH CAM SINGLE NONE 38
17X CAJ CAK DOUBLE NONE 39
17X NBH CBD SINGLE NONE 40
17X NBH CBG SINGLE NONE 41
17X CBD CBC DOUBLE NONE 42
17X CBA CBB DOUBLE NONE 43
17X CAM CAL DOUBLE NONE 44
17X CAK CAL SINGLE NONE 45
17X CBC CBB SINGLE NONE 46
17X CBC NBF SINGLE NONE 47
17X CBG CBI SINGLE NONE 48
17X CBG NBF DOUBLE NONE 49
17X CBN CBI SINGLE NONE 50
17X CBN CBM DOUBLE NONE 51
17X CBI CBJ DOUBLE NONE 52
17X CBM CBL SINGLE NONE 53
17X CBJ CBK SINGLE NONE 54
17X CBL CBK DOUBLE NONE 55
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
17X MurckoScaffold S1 scaffold 'O=C(OC[C@H](C1CCNCC1)n1c(-c2ccccc2)nc2ccccc21)C1CCN(c2nc3ccccc3n2Cc2ccccc2)CC1' InChI=1S/C40H42N6O2/c47-39(32-21-25-44(26-22-32)40-43-33-15-7-9-17-35(33)45(40)27-29-11-3-1-4-12-29)48-28-37(30-19-23-41-24-20-30)46-36-18-10-8-16-34(36)42-38(46)31-13-5-2-6-14-31/h1-18,30,32,37,41H,19-28H2/t37-/m1/s1 WDALFJYWTFDSRP-DIPNUNPCSA-N
17X benzimidazole F1 fragment 'c1ccc2[nH]cnc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)8-5-9-7/h1-5H,(H,8,9) HYZJCKYKOHLVJF-UHFFFAOYSA-N
17X imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
17X phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
17X CAI S1 1
17X CAJ S1 1
17X CAK S1 1
17X CAL S1 1
17X CAM S1 1
17X CAH S1 1
17X CAG S1 1
17X NAD S1 1
17X CAC S1 1
17X CAF S1 1
17X CAE S1 1
17X CAX S1 1
17X CAW S1 1
17X CAV S1 1
17X NAY S1 1
17X CAB S1 1
17X NAA S1 1
17X CAR S1 1
17X CAQ S1 1
17X CAN S1 1
17X CAO S1 1
17X CAP S1 1
17X CAS S1 1
17X OAT S1 1
17X OAU S1 1
17X CBP S1 1
17X CBO S1 1
17X CBQ S1 1
17X CBR S1 1
17X CBS S1 1
17X NBV S1 1
17X CBT S1 1
17X CBU S1 1
17X NBH S1 1
17X CBD S1 1
17X CBE S1 1
17X CAZ S1 1
17X CBA S1 1
17X CBB S1 1
17X CBC S1 1
17X NBF S1 1
17X CBG S1 1
17X CBI S1 1
17X CBJ S1 1
17X CBK S1 1
17X CBL S1 1
17X CBM S1 1
17X CBN S1 1
17X CAC F1 1
17X NAD F1 1
17X CAB F1 1
17X NAY F1 1
17X CAV F1 1
17X CAW F1 1
17X CAX F1 1
17X CAE F1 1
17X CAF F1 1
17X CBD F1 2
17X NBH F1 2
17X CBG F1 2
17X NBF F1 2
17X CBC F1 2
17X CBB F1 2
17X CBA F1 2
17X CAZ F1 2
17X CBE F1 2
17X CAC F2 1
17X CAV F2 1
17X NAY F2 1
17X CAB F2 1
17X NAD F2 1
17X CBD F2 2
17X CBC F2 2
17X NBF F2 2
17X CBG F2 2
17X NBH F2 2
17X CAI F3 1
17X CAH F3 1
17X CAM F3 1
17X CAL F3 1
17X CAK F3 1
17X CAJ F3 1
17X CAC F3 2
17X CAV F3 2
17X CAW F3 2
17X CAX F3 2
17X CAE F3 2
17X CAF F3 2
17X CBD F3 3
17X CBE F3 3
17X CAZ F3 3
17X CBA F3 3
17X CBB F3 3
17X CBC F3 3
17X CBI F3 4
17X CBN F3 4
17X CBM F3 4
17X CBL F3 4
17X CBK F3 4
17X CBJ F3 4
#
_pdbe_chem_comp_rdkit_properties.comp_id 17X
_pdbe_chem_comp_rdkit_properties.exactmw 638.337
_pdbe_chem_comp_rdkit_properties.amw 638.816
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 90
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.325
_pdbe_chem_comp_rdkit_properties.NumRings 8
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 339.993
_pdbe_chem_comp_rdkit_properties.tpsa 77.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.430
_pdbe_chem_comp_rdkit_properties.CrippenMR 184.149
_pdbe_chem_comp_rdkit_properties.chi0v 23.500
_pdbe_chem_comp_rdkit_properties.chi1v 13.216
_pdbe_chem_comp_rdkit_properties.chi2v 6.197
_pdbe_chem_comp_rdkit_properties.chi3v 6.197
_pdbe_chem_comp_rdkit_properties.chi4v 4.201
_pdbe_chem_comp_rdkit_properties.chi0n 65.500
_pdbe_chem_comp_rdkit_properties.chi1n 34.164
_pdbe_chem_comp_rdkit_properties.chi2n 6.197
_pdbe_chem_comp_rdkit_properties.chi3n 6.197
_pdbe_chem_comp_rdkit_properties.chi4n 4.201
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.950
_pdbe_chem_comp_rdkit_properties.kappa1 8.984
_pdbe_chem_comp_rdkit_properties.kappa2 13.650
_pdbe_chem_comp_rdkit_properties.kappa3 6.082
_pdbe_chem_comp_rdkit_properties.Phi 2.555
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
17X UniChem ZINC ZINC000098207928
17X UniChem PubChem 90644544
17X UniChem BindingDb 50019866
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
17X CAI 8.277 0.612 -1.148 ETKDGv3 1
17X CAJ 9.281 -0.075 -0.310 ETKDGv3 2
17X CAK 9.100 -1.353 0.043 ETKDGv3 3
17X CAL 7.896 -2.079 -0.408 ETKDGv3 4
17X CAM 6.987 -1.462 -1.173 ETKDGv3 5
17X CAH 7.182 -0.045 -1.572 ETKDGv3 6
17X CAG 6.125 0.661 -2.378 ETKDGv3 7
17X NAD 5.167 1.328 -1.495 ETKDGv3 8
17X CAC 5.415 2.556 -0.822 ETKDGv3 9
17X CAF 6.298 3.666 -1.229 ETKDGv3 10
17X CAE 6.416 4.718 -0.398 ETKDGv3 11
17X CAX 5.671 4.746 0.895 ETKDGv3 12
17X CAW 4.875 3.720 1.245 ETKDGv3 13
17X CAV 4.763 2.583 0.317 ETKDGv3 14
17X NAY 4.032 1.382 0.509 ETKDGv3 15
17X CAB 4.291 0.677 -0.554 ETKDGv3 16
17X NAA 3.704 -0.619 -0.769 ETKDGv3 17
17X CAR 3.161 -0.972 -2.091 ETKDGv3 18
17X CAQ 1.870 -1.799 -1.962 ETKDGv3 19
17X CAN 3.373 -1.474 0.376 ETKDGv3 20
17X CAO 1.849 -1.536 0.580 ETKDGv3 21
17X CAP 1.058 -1.338 -0.737 ETKDGv3 22
17X CAS -0.274 -2.031 -0.662 ETKDGv3 23
17X OAT -0.357 -3.277 -0.847 ETKDGv3 24
17X OAU -1.405 -1.287 -0.320 ETKDGv3 25
17X CBP -2.690 -1.872 -0.139 ETKDGv3 26
17X CBO -3.697 -0.804 0.330 ETKDGv3 27
17X CBQ -3.596 -0.497 1.860 ETKDGv3 28
17X CBR -2.161 -0.059 2.258 ETKDGv3 29
17X CBS -2.169 0.775 3.545 ETKDGv3 30
17X NBV -2.937 2.028 3.397 ETKDGv3 31
17X CBT -4.032 1.960 2.410 ETKDGv3 32
17X CBU -4.643 0.556 2.324 ETKDGv3 33
17X NBH -5.057 -1.222 -0.061 ETKDGv3 34
17X CBD -5.882 -2.205 0.559 ETKDGv3 35
17X CBE -5.500 -3.354 1.405 ETKDGv3 36
17X CAZ -6.477 -4.151 1.873 ETKDGv3 37
17X CBA -7.904 -3.875 1.536 ETKDGv3 38
17X CBB -8.228 -2.829 0.756 ETKDGv3 39
17X CBC -7.140 -1.972 0.257 ETKDGv3 40
17X NBF -7.260 -0.836 -0.586 ETKDGv3 41
17X CBG -6.037 -0.430 -0.761 ETKDGv3 42
17X CBI -5.723 0.729 -1.619 ETKDGv3 43
17X CBJ -4.676 0.701 -2.464 ETKDGv3 44
17X CBK -4.386 1.865 -3.329 ETKDGv3 45
17X CBL -5.175 2.945 -3.288 ETKDGv3 46
17X CBM -6.340 2.974 -2.380 ETKDGv3 47
17X CBN -6.604 1.923 -1.593 ETKDGv3 48
17X H1 8.436 1.651 -1.410 ETKDGv3 49
17X H2 10.162 0.460 0.022 ETKDGv3 50
17X H3 9.833 -1.856 0.660 ETKDGv3 51
17X H4 7.750 -3.112 -0.119 ETKDGv3 52
17X H5 6.109 -2.004 -1.499 ETKDGv3 53
17X H6 6.592 1.406 -3.059 ETKDGv3 54
17X H7 5.601 -0.061 -3.033 ETKDGv3 55
17X H8 6.834 3.642 -2.168 ETKDGv3 56
17X H9 7.054 5.550 -0.667 ETKDGv3 57
17X H10 5.777 5.597 1.556 ETKDGv3 58
17X H11 4.336 3.727 2.183 ETKDGv3 59
17X H12 2.929 -0.045 -2.661 ETKDGv3 60
17X H13 3.911 -1.558 -2.661 ETKDGv3 61
17X H14 1.266 -1.684 -2.889 ETKDGv3 62
17X H15 2.131 -2.876 -1.854 ETKDGv3 63
17X H16 3.757 -2.498 0.174 ETKDGv3 64
17X H17 3.872 -1.121 1.305 ETKDGv3 65
17X H18 1.604 -2.517 1.045 ETKDGv3 66
17X H19 1.544 -0.746 1.301 ETKDGv3 67
17X H20 0.862 -0.249 -0.861 ETKDGv3 68
17X H21 -3.023 -2.299 -1.111 ETKDGv3 69
17X H22 -2.623 -2.696 0.601 ETKDGv3 70
17X H23 -3.449 0.138 -0.201 ETKDGv3 71
17X H24 -3.814 -1.432 2.417 ETKDGv3 72
17X H25 -1.521 -0.956 2.407 ETKDGv3 73
17X H26 -1.703 0.562 1.457 ETKDGv3 74
17X H27 -2.611 0.175 4.370 ETKDGv3 75
17X H28 -1.121 1.008 3.836 ETKDGv3 76
17X H29 -2.280 2.787 3.097 ETKDGv3 77
17X H31 -4.823 2.681 2.707 ETKDGv3 78
17X H32 -3.665 2.261 1.403 ETKDGv3 79
17X H33 -5.017 0.278 3.334 ETKDGv3 80
17X H34 -5.532 0.591 1.665 ETKDGv3 81
17X H35 -4.468 -3.568 1.642 ETKDGv3 82
17X H36 -6.230 -5.002 2.494 ETKDGv3 83
17X H37 -8.681 -4.524 1.920 ETKDGv3 84
17X H38 -9.259 -2.621 0.502 ETKDGv3 85
17X H39 -4.042 -0.174 -2.536 ETKDGv3 86
17X H40 -3.535 1.839 -3.997 ETKDGv3 87
17X H41 -4.964 3.796 -3.921 ETKDGv3 88
17X H42 -6.980 3.846 -2.354 ETKDGv3 89
17X H43 -7.458 1.954 -0.928 ETKDGv3 90
#