data_105
#
_chem_comp.id 105
_chem_comp.name 'N-[5-METHYL-3-O-TOLYL-ISOXAZOLE-4-CARBOXYLIC ACID AMIDE] BORONIC ACID'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C12 H12 B Cl N2 O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 'CLOXACILLIN DERIVATIVE'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-09-27
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 294.499
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 105
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FSY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
105 B B B 0 1 N N N N N N 76.973 4.806 28.614 -0.817 0.424 4.468 B 105 1
105 O1 O1 O 0 1 N N N N N N 77.992 3.739 28.547 -1.558 0.261 5.669 O1 105 2
105 O2 O2 O 0 1 N N N N N N 76.872 5.476 27.323 0.591 0.594 4.521 O2 105 3
105 C3 C3 C 0 1 N N N N N N 77.326 5.864 29.761 -1.556 0.418 3.083 C3 105 4
105 N4 N4 N 0 1 N N N N N N 78.751 5.741 30.187 -0.579 0.603 2.008 N4 105 5
105 C5 C5 C 0 1 N N N N N N 79.196 6.256 31.359 0.012 -0.468 1.443 C5 105 6
105 O6 O6 O 0 1 N N N N N N 78.467 6.894 32.141 -0.265 -1.588 1.826 O6 105 7
105 C7 C7 C 0 1 Y N N N N N 80.606 6.093 31.654 0.994 -0.282 0.362 C7 105 8
105 N11 N11 N 0 1 Y N N N N N 82.849 6.228 31.227 1.939 0.009 -1.620 N11 105 9
105 O10 O10 O 0 1 Y N N N N N 82.657 5.676 32.516 2.816 -0.036 -0.791 O10 105 10
105 C8 C8 C 0 1 Y N N N N N 81.341 5.643 32.648 2.362 -0.207 0.451 C8 105 11
105 C12 C12 C 0 1 Y N N N N N 81.648 6.449 30.734 0.751 -0.122 -1.087 C12 105 12
105 C9 C9 C 0 1 N N N N N N 80.699 5.095 33.902 3.189 -0.306 1.707 C9 105 13
105 C13 C13 C 0 1 Y N N N N N 81.639 6.968 29.314 -0.556 -0.118 -1.786 C13 105 14
105 C14 C14 C 0 1 Y N N N N N 80.947 8.214 28.978 -0.618 0.161 -3.151 C14 105 15
105 CL1 CL1 CL 0 0 N N N N N N 80.247 9.319 30.252 0.835 0.497 -4.038 CL1 105 16
105 C15 C15 C 0 1 Y N N N N N 80.790 8.577 27.616 -1.839 0.157 -3.799 C15 105 17
105 C16 C16 C 0 1 Y N N N N N 81.325 7.748 26.589 -2.997 -0.110 -3.093 C16 105 18
105 C17 C17 C 0 1 Y N N N N N 82.021 6.547 26.924 -2.941 -0.381 -1.737 C17 105 19
105 C18 C18 C 0 1 Y N N N N N 82.183 6.164 28.285 -1.727 -0.387 -1.081 C18 105 20
105 H1 H1 H 0 1 N N N N N N 78.057 3.302 29.388 -0.922 0.295 6.396 H1 105 21
105 H2 H2 H 0 1 N N N N N N 76.216 6.162 27.366 0.895 0.687 3.608 H2 105 22
105 H31 1H3 H 0 1 N N N N N N 77.079 6.905 29.448 -2.284 1.228 3.056 H31 105 23
105 H32 2H3 H 0 1 N N N N N N 76.629 5.777 30.627 -2.068 -0.534 2.949 H32 105 24
105 H4 H4 H 0 1 N N N N N N 79.471 5.271 29.638 -0.357 1.496 1.702 H4 105 25
105 H91 1H9 H 0 1 N N N N N N 81.321 4.713 34.744 4.245 -0.215 1.454 H91 105 26
105 H92 2H9 H 0 1 N N N N N N 80.007 5.871 34.305 2.908 0.495 2.391 H92 105 27
105 H93 3H9 H 0 1 N N N N N N 79.987 4.289 33.604 3.011 -1.269 2.184 H93 105 28
105 H15 H15 H 0 1 N N N N N N 80.251 9.503 27.355 -1.889 0.368 -4.857 H15 105 29
105 H16 H16 H 0 1 N N N N N N 81.200 8.036 25.531 -3.950 -0.107 -3.602 H16 105 30
105 H17 H17 H 0 1 N N N N N N 82.436 5.910 26.125 -3.849 -0.590 -1.191 H17 105 31
105 H18 H18 H 0 1 N N N N N N 82.731 5.242 28.542 -1.685 -0.600 -0.023 H18 105 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
105 B O1 SING N N 1
105 B O2 SING N N 2
105 B C3 SING N N 3
105 O1 H1 SING N N 4
105 O2 H2 SING N N 5
105 C3 N4 SING N N 6
105 C3 H31 SING N N 7
105 C3 H32 SING N N 8
105 N4 C5 SING N N 9
105 N4 H4 SING N N 10
105 C5 O6 DOUB N N 11
105 C5 C7 SING N N 12
105 C7 C8 DOUB Y N 13
105 C7 C12 SING Y N 14
105 N11 O10 SING Y N 15
105 N11 C12 DOUB Y N 16
105 O10 C8 SING Y N 17
105 C8 C9 SING N N 18
105 C12 C13 SING Y N 19
105 C9 H91 SING N N 20
105 C9 H92 SING N N 21
105 C9 H93 SING N N 22
105 C13 C14 DOUB Y N 23
105 C13 C18 SING Y N 24
105 C14 CL1 SING N N 25
105 C14 C15 SING Y N 26
105 C15 C16 DOUB Y N 27
105 C15 H15 SING N N 28
105 C16 C17 SING Y N 29
105 C16 H16 SING N N 30
105 C17 C18 DOUB Y N 31
105 C17 H17 SING N N 32
105 C18 H18 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
105 SMILES ACDLabs 10.04 'Clc1ccccc1c2noc(c2C(=O)NCB(O)O)C'
105 SMILES_CANONICAL CACTVS 3.341 'Cc1onc(c2ccccc2Cl)c1C(=O)NCB(O)O'
105 SMILES CACTVS 3.341 'Cc1onc(c2ccccc2Cl)c1C(=O)NCB(O)O'
105 SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'B(CNC(=O)c1c(onc1c2ccccc2Cl)C)(O)O'
105 SMILES 'OpenEye OEToolkits' 1.5.0 'B(CNC(=O)c1c(onc1c2ccccc2Cl)C)(O)O'
105 InChI InChI 1.03 'InChI=1S/C12H12BClN2O4/c1-7-10(12(17)15-6-13(18)19)11(16-20-7)8-4-2-3-5-9(8)14/h2-5,18-19H,6H2,1H3,(H,15,17)'
105 InChIKey InChI 1.03 LSXNXXCBOPILJR-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
105 'SYSTEMATIC NAME' ACDLabs 10.04 '[({[3-(2-chlorophenyl)-5-methylisoxazol-4-yl]carbonyl}amino)methyl]boronic acid'
105 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '[[3-(2-chlorophenyl)-5-methyl-1,2-oxazol-4-yl]carbonylamino]methylboronic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
105 'Create component' 2000-09-27 RCSB
105 'Modify aromatic_flag' 2011-06-04 RCSB
105 'Modify descriptor' 2011-06-04 RCSB
105 'Modify synonyms' 2021-03-01 PDBE
105 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 105
_pdbx_chem_comp_synonyms.name 'CLOXACILLIN DERIVATIVE'
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 105
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom B
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_synonyms.comp_id 105
_pdbe_chem_comp_synonyms.name 'CLOXACILLIN DERIVATIVE'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
105 B B 11.894 2.186 1
105 O1 O 13.321 1.723 2
105 O2 O 11.582 3.653 3
105 C3 C 10.780 1.183 4
105 N4 N 9.353 1.646 5
105 C5 C 8.238 0.642 6
105 O6 O 8.550 -0.825 7
105 C7 C 6.812 1.106 8
105 N11 N 4.385 1.106 9
105 O10 O 4.848 2.532 10
105 C8 C 6.348 2.532 11
105 C12 C 5.598 0.224 12
105 C9 C 7.230 3.746 13
105 C13 C 5.598 -1.276 14
105 C14 C 4.299 -2.026 15
105 CL1 Cl 3.000 -1.276 16
105 C15 C 4.299 -3.526 17
105 C16 C 5.598 -4.276 18
105 C17 C 6.897 -3.526 19
105 C18 C 6.897 -2.026 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
105 B O1 SINGLE NONE 1
105 B O2 SINGLE NONE 2
105 B C3 SINGLE NONE 3
105 C3 N4 SINGLE NONE 4
105 N4 C5 SINGLE NONE 5
105 C5 O6 DOUBLE NONE 6
105 C5 C7 SINGLE NONE 7
105 C7 C8 DOUBLE NONE 8
105 C7 C12 SINGLE NONE 9
105 N11 O10 SINGLE NONE 10
105 N11 C12 DOUBLE NONE 11
105 O10 C8 SINGLE NONE 12
105 C8 C9 SINGLE NONE 13
105 C12 C13 SINGLE NONE 14
105 C13 C14 DOUBLE NONE 15
105 C13 C18 SINGLE NONE 16
105 C14 CL1 SINGLE NONE 17
105 C14 C15 SINGLE NONE 18
105 C15 C16 DOUBLE NONE 19
105 C16 C17 SINGLE NONE 20
105 C17 C18 DOUBLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
105 MurckoScaffold S1 scaffold c1ccc(-c2ccon2)cc1 InChI=1S/C9H7NO/c1-2-4-8(5-3-1)9-6-7-11-10-9/h1-7H ZBRDJMFLJXFIGJ-UHFFFAOYSA-N
105 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
105 isoxazole F2 fragment c1cnoc1 InChI=1S/C3H3NO/c1-2-4-5-3-1/h1-3H CTAPFRYPJLPFDF-UHFFFAOYSA-N
105 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
105 C7 S1 1
105 N11 S1 1
105 O10 S1 1
105 C8 S1 1
105 C12 S1 1
105 C13 S1 1
105 C14 S1 1
105 C15 S1 1
105 C16 S1 1
105 C17 S1 1
105 C18 S1 1
105 N4 F1 1
105 C5 F1 1
105 O6 F1 1
105 C7 F1 1
105 C8 F2 1
105 C7 F2 1
105 C12 F2 1
105 N11 F2 1
105 O10 F2 1
105 C13 F3 1
105 C14 F3 1
105 C15 F3 1
105 C16 F3 1
105 C17 F3 1
105 C18 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 105
_pdbe_chem_comp_rdkit_properties.exactmw 294.058
_pdbe_chem_comp_rdkit_properties.amw 294.503
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.167
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 137.135
_pdbe_chem_comp_rdkit_properties.tpsa 95.590
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.556
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.357
_pdbe_chem_comp_rdkit_properties.chi0v 10.239
_pdbe_chem_comp_rdkit_properties.chi1v 5.339
_pdbe_chem_comp_rdkit_properties.chi2v 2.339
_pdbe_chem_comp_rdkit_properties.chi3v 2.339
_pdbe_chem_comp_rdkit_properties.chi4v 1.471
_pdbe_chem_comp_rdkit_properties.chi0n 21.483
_pdbe_chem_comp_rdkit_properties.chi1n 10.724
_pdbe_chem_comp_rdkit_properties.chi2n 2.056
_pdbe_chem_comp_rdkit_properties.chi3n 2.056
_pdbe_chem_comp_rdkit_properties.chi4n 1.287
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.825
_pdbe_chem_comp_rdkit_properties.kappa1 5.516
_pdbe_chem_comp_rdkit_properties.kappa2 6.085
_pdbe_chem_comp_rdkit_properties.kappa3 3.010
_pdbe_chem_comp_rdkit_properties.Phi 1.678
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
105 UniChem 'PubChem TPHARMA' 14918347
105 UniChem PubChem 2815
105 UniChem BindingDb 50115620
105 UniChem Nikkaji J2.176.860J
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
105 B 3.009 -1.690 0.335 ETKDGv3 1
105 O1 2.917 -2.401 -0.937 ETKDGv3 2
105 O2 2.858 -2.421 1.590 ETKDGv3 3
105 C3 3.237 -0.112 0.352 ETKDGv3 4
105 N4 2.154 0.565 -0.356 ETKDGv3 5
105 C5 0.852 0.743 0.222 ETKDGv3 6
105 O6 0.595 0.262 1.359 ETKDGv3 7
105 C7 -0.214 1.452 -0.512 ETKDGv3 8
105 N11 -2.297 2.046 -1.171 ETKDGv3 9
105 O10 -1.374 2.946 -1.645 ETKDGv3 10
105 C8 -0.108 2.573 -1.222 ETKDGv3 11
105 C12 -1.653 1.157 -0.485 ETKDGv3 12
105 C9 1.130 3.356 -1.520 ETKDGv3 13
105 C13 -2.300 -0.033 0.112 ETKDGv3 14
105 C14 -3.466 0.047 0.794 ETKDGv3 15
105 CL1 -4.281 1.580 1.098 ETKDGv3 16
105 C15 -4.073 -1.177 1.363 ETKDGv3 17
105 C16 -3.479 -2.364 1.205 ETKDGv3 18
105 C17 -2.213 -2.461 0.455 ETKDGv3 19
105 C18 -1.656 -1.362 -0.064 ETKDGv3 20
105 H1 3.847 -2.672 -1.141 ETKDGv3 21
105 H2 3.778 -2.696 1.833 ETKDGv3 22
105 H31 3.301 0.259 1.397 ETKDGv3 23
105 H32 4.201 0.105 -0.153 ETKDGv3 24
105 H4 2.323 0.861 -1.343 ETKDGv3 25
105 H91 1.808 3.363 -0.641 ETKDGv3 26
105 H92 0.856 4.404 -1.762 ETKDGv3 27
105 H93 1.651 2.914 -2.395 ETKDGv3 28
105 H15 -5.003 -1.111 1.915 ETKDGv3 29
105 H16 -3.926 -3.256 1.624 ETKDGv3 30
105 H17 -1.740 -3.425 0.321 ETKDGv3 31
105 H18 -0.736 -1.452 -0.628 ETKDGv3 32
#