data_0X9
#
_chem_comp.id 0X9
_chem_comp.name N~2~-sulfamoyl-L-arginine
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C6 H15 N5 O4 S"
_chem_comp.mon_nstd_parent_comp_id ARG
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-09-04
_chem_comp.pdbx_modified_date 2013-08-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 253.279
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0X9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4GM5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0X9 O15 O15 O 0 1 N N N N N N 63.859 -49.755 9.652 -2.945 1.904 -0.779 O15 0X9 1
0X9 C14 C14 C 0 1 N N N N N N 64.311 -49.942 10.805 -2.036 2.016 0.009 C14 0X9 2
0X9 O16 O16 O 0 1 N N N N N N 65.521 -49.766 11.105 -1.875 3.163 0.688 O16 0X9 3
0X9 C13 C13 C 0 1 N N S N N N 63.347 -50.135 11.925 -1.088 0.867 0.235 C13 0X9 4
0X9 N17 N17 N 0 1 N N N N N N 63.749 -51.241 12.751 -1.479 -0.262 -0.613 N17 0X9 5
0X9 S18 S18 S 0 1 N N N N N N 63.882 -52.715 12.092 -2.447 -1.459 -0.004 S18 0X9 6
0X9 O20 O20 O 0 1 N N N N N N 64.740 -53.451 13.004 -1.881 -1.837 1.243 O20 0X9 7
0X9 N19 N19 N 0 1 N N N N N N 62.422 -53.368 11.980 -3.916 -0.774 0.338 N19 0X9 8
0X9 O21 O21 O 0 1 N N N N N N 64.470 -52.483 10.770 -2.670 -2.375 -1.067 O21 0X9 9
0X9 C12 C12 C 0 1 N N N N N N 63.240 -48.831 12.773 0.335 1.303 -0.120 C12 0X9 10
0X9 C11 C11 C 0 1 N N N N N N 62.950 -47.514 12.024 1.314 0.179 0.226 C11 0X9 11
0X9 C30 C30 C 0 1 N N N N N N 63.105 -46.344 12.989 2.737 0.615 -0.130 C30 0X9 12
0X9 N13 N13 N 0 1 N N N N N N 63.050 -44.962 12.474 3.674 -0.461 0.202 N13 0X9 13
0X9 C31 C31 C 0 1 N N N N N N 62.036 -44.099 12.789 5.019 -0.296 -0.031 C31 0X9 14
0X9 N16 N16 N 0 1 N N N N N N 62.128 -42.836 12.340 5.460 0.817 -0.547 N16 0X9 15
0X9 N15 N15 N 0 1 N N N N N N 60.956 -44.479 13.537 5.899 -1.306 0.280 N15 0X9 16
0X9 H1 H1 H 0 1 N N N N N N 66.000 -49.481 10.336 -2.510 3.870 0.513 H1 0X9 17
0X9 H2 H2 H 0 1 N Y N N N N 62.353 -50.341 11.501 -1.125 0.565 1.281 H2 0X9 18
0X9 H3 H3 H 0 1 N N N N N N 64.644 -51.010 13.132 -1.170 -0.308 -1.532 H3 0X9 19
0X9 H4 H4 H 0 1 N N N N N N 62.050 -53.513 12.897 -4.062 0.170 0.168 H4 0X9 20
0X9 H5 H5 H 0 1 N N N N N N 61.820 -52.754 11.470 -4.630 -1.317 0.708 H5 0X9 21
0X9 H6 H6 H 0 1 N N N N N N 62.431 -48.979 13.504 0.393 1.520 -1.187 H6 0X9 22
0X9 H7 H7 H 0 1 N N N N N N 64.195 -48.704 13.304 0.593 2.197 0.447 H7 0X9 23
0X9 H8 H8 H 0 1 N N N N N N 63.660 -47.400 11.191 1.256 -0.038 1.292 H8 0X9 24
0X9 H9 H9 H 0 1 N N N N N N 61.923 -47.533 11.631 1.056 -0.715 -0.342 H9 0X9 25
0X9 H10 H10 H 0 1 N N N N N N 62.304 -46.438 13.737 2.795 0.832 -1.196 H10 0X9 26
0X9 H11 H11 H 0 1 N N N N N N 64.082 -46.463 13.481 2.995 1.510 0.438 H11 0X9 27
0X9 H12 H12 H 0 1 N N N N N N 63.782 -44.644 11.872 3.346 -1.289 0.585 H12 0X9 28
0X9 H13 H13 H 0 1 N N N N N N 61.346 -42.280 12.622 6.410 0.933 -0.711 H13 0X9 29
0X9 H15 H15 H 0 1 N N N N N N 60.887 -45.418 13.875 5.571 -2.134 0.663 H15 0X9 30
0X9 H16 H16 H 0 1 N N N N N N 60.235 -43.818 13.746 6.848 -1.190 0.115 H16 0X9 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0X9 O15 C14 DOUB N N 1
0X9 O21 S18 DOUB N N 2
0X9 C14 O16 SING N N 3
0X9 C14 C13 SING N N 4
0X9 C13 N17 SING N N 5
0X9 C13 C12 SING N N 6
0X9 N19 S18 SING N N 7
0X9 C11 C12 SING N N 8
0X9 C11 C30 SING N N 9
0X9 S18 N17 SING N N 10
0X9 S18 O20 DOUB N N 11
0X9 N16 C31 DOUB N N 12
0X9 N13 C31 SING N N 13
0X9 N13 C30 SING N N 14
0X9 C31 N15 SING N N 15
0X9 O16 H1 SING N N 16
0X9 C13 H2 SING N N 17
0X9 N17 H3 SING N N 18
0X9 N19 H4 SING N N 19
0X9 N19 H5 SING N N 20
0X9 C12 H6 SING N N 21
0X9 C12 H7 SING N N 22
0X9 C11 H8 SING N N 23
0X9 C11 H9 SING N N 24
0X9 C30 H10 SING N N 25
0X9 C30 H11 SING N N 26
0X9 N13 H12 SING N N 27
0X9 N16 H13 SING N N 28
0X9 N15 H15 SING N N 29
0X9 N15 H16 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0X9 SMILES ACDLabs 12.01 O=S(=O)(NC(C(=O)O)CCCNC(=[N@H])N)N
0X9 InChI InChI 1.03 InChI=1S/C6H15N5O4S/c7-6(8)10-3-1-2-4(5(12)13)11-16(9,14)15/h4,11H,1-3H2,(H,12,13)(H4,7,8,10)(H2,9,14,15)/t4-/m0/s1
0X9 InChIKey InChI 1.03 PBEOTCYEZLQJNW-BYPYZUCNSA-N
0X9 SMILES_CANONICAL CACTVS 3.370 NC(=N)NCCC[C@H](N[S](N)(=O)=O)C(O)=O
0X9 SMILES CACTVS 3.370 NC(=N)NCCC[CH](N[S](N)(=O)=O)C(O)=O
0X9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\N)/NCCC[C@@H](C(=O)O)NS(=O)(=O)N"
0X9 SMILES "OpenEye OEToolkits" 1.7.6 C(CC(C(=O)O)NS(=O)(=O)N)CNC(=N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0X9 "SYSTEMATIC NAME" ACDLabs 12.01 N~2~-sulfamoyl-L-arginine
0X9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-5-carbamimidamido-2-(sulfamoylamino)pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0X9 'Create component' 2012-09-04 RCSB
0X9 'Modify linking type' 2012-09-04 RCSB
0X9 'Initial release' 2013-08-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0X9 O15 O 5.104 2.715 1
0X9 C14 C 6.404 3.465 2
0X9 O16 O 6.404 4.965 3
0X9 C13 C 7.702 2.715 4
0X9 N17 N 9.002 3.465 5
0X9 S18 S 10.301 2.715 6
0X9 O20 O 11.600 1.965 7
0X9 N19 N 9.551 1.416 8
0X9 O21 O 11.051 4.014 9
0X9 C12 C 7.702 1.215 10
0X9 C11 C 6.404 0.465 11
0X9 C30 C 6.404 -1.035 12
0X9 N13 N 5.104 -1.785 13
0X9 C31 C 5.104 -3.285 14
0X9 N16 N 3.805 -4.035 15
0X9 N15 N 6.404 -4.035 16
0X9 H13 H 3.805 -5.535 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0X9 O15 C14 DOUBLE NONE 1
0X9 O21 S18 DOUBLE NONE 2
0X9 C14 O16 SINGLE NONE 3
0X9 C14 C13 SINGLE NONE 4
0X9 C13 N17 SINGLE NONE 5
0X9 C13 C12 SINGLE BEGINWEDGE 6
0X9 N19 S18 SINGLE NONE 7
0X9 C11 C12 SINGLE NONE 8
0X9 C11 C30 SINGLE NONE 9
0X9 S18 N17 SINGLE NONE 10
0X9 S18 O20 DOUBLE NONE 11
0X9 N16 C31 DOUBLE NONE 12
0X9 N13 C31 SINGLE ENDDOWNRIGHT 13
0X9 N13 C30 SINGLE NONE 14
0X9 C31 N15 SINGLE ENDDOWNRIGHT 15
#
_pdbe_chem_comp_substructure.comp_id 0X9
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0X9 O15 F1 1
0X9 C14 F1 1
0X9 C13 F1 1
0X9 N17 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0X9
_pdbe_chem_comp_rdkit_properties.exactmw 253.084
_pdbe_chem_comp_rdkit_properties.amw 253.284
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 114.448
_pdbe_chem_comp_rdkit_properties.tpsa 171.390
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.504
_pdbe_chem_comp_rdkit_properties.CrippenMR 56.818
_pdbe_chem_comp_rdkit_properties.chi0v 8.094
_pdbe_chem_comp_rdkit_properties.chi1v 4.622
_pdbe_chem_comp_rdkit_properties.chi2v 1.206
_pdbe_chem_comp_rdkit_properties.chi3v 1.206
_pdbe_chem_comp_rdkit_properties.chi4v 0.742
_pdbe_chem_comp_rdkit_properties.chi0n 22.277
_pdbe_chem_comp_rdkit_properties.chi1n 10.264
_pdbe_chem_comp_rdkit_properties.chi2n 0.793
_pdbe_chem_comp_rdkit_properties.chi3n 0.793
_pdbe_chem_comp_rdkit_properties.chi4n 0.392
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.390
_pdbe_chem_comp_rdkit_properties.kappa1 3.306
_pdbe_chem_comp_rdkit_properties.kappa2 6.249
_pdbe_chem_comp_rdkit_properties.kappa3 7.963
_pdbe_chem_comp_rdkit_properties.Phi 1.291
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0X9 UniChem ZINC ZINC000095920512
0X9 UniChem PubChem 71660635
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0X9 O15 -2.572 1.920 -0.575 ETKDGv3 1
0X9 C14 -2.319 0.685 -0.563 ETKDGv3 2
0X9 O16 -3.018 -0.172 -1.408 ETKDGv3 3
0X9 C13 -1.255 0.143 0.360 ETKDGv3 4
0X9 N17 -1.804 -0.874 1.272 ETKDGv3 5
0X9 S18 -2.796 -0.159 2.511 ETKDGv3 6
0X9 O20 -3.171 -1.220 3.507 ETKDGv3 7
0X9 N19 -4.237 0.502 1.819 ETKDGv3 8
0X9 O21 -2.036 0.928 3.219 ETKDGv3 9
0X9 C12 -0.101 -0.481 -0.447 ETKDGv3 10
0X9 C11 0.673 0.565 -1.268 ETKDGv3 11
0X9 C30 1.827 -0.067 -2.056 ETKDGv3 12
0X9 N13 2.834 -0.636 -1.160 ETKDGv3 13
0X9 C31 3.763 0.163 -0.412 ETKDGv3 14
0X9 N16 3.775 1.452 -0.547 ETKDGv3 15
0X9 N15 4.686 -0.472 0.476 ETKDGv3 16
0X9 H1 -3.733 0.182 -2.032 ETKDGv3 17
0X9 H2 -0.825 0.978 0.958 ETKDGv3 18
0X9 H3 -2.392 -1.557 0.740 ETKDGv3 19
0X9 H4 -4.750 -0.289 1.369 ETKDGv3 20
0X9 H5 -4.832 0.836 2.610 ETKDGv3 21
0X9 H6 -0.498 -1.271 -1.123 ETKDGv3 22
0X9 H7 0.600 -0.968 0.266 ETKDGv3 23
0X9 H8 1.066 1.356 -0.594 ETKDGv3 24
0X9 H9 -0.015 1.050 -1.994 ETKDGv3 25
0X9 H10 1.426 -0.867 -2.716 ETKDGv3 26
0X9 H11 2.298 0.697 -2.711 ETKDGv3 27
0X9 H12 2.907 -1.677 -1.098 ETKDGv3 28
0X9 H13 4.443 2.054 -0.016 ETKDGv3 29
0X9 H15 4.682 -1.509 0.589 ETKDGv3 30
0X9 H16 5.374 0.090 1.027 ETKDGv3 31
#