data_0LI
#
_chem_comp.id 0LI
_chem_comp.name
;3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam
ide
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H27 F3 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Ponatinib
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-08-06
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 532.559
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0LI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3IK3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0LI N1 N1 N 0 1 Y N N N N N 4.094 -7.340 13.892 -9.896 -0.371 -0.385 N1 0LI 1
0LI N3 N3 N 0 1 N N N N N N 7.343 7.825 19.129 6.438 -1.243 -0.016 N3 0LI 2
0LI C4 C4 C 0 1 N N N N N N 3.110 -2.662 13.914 -5.381 1.078 -0.489 C4 0LI 3
0LI C5 C5 C 0 1 Y N N N N N 3.124 -1.217 13.748 -4.094 1.696 -0.596 C5 0LI 4
0LI C6 C6 C 0 1 Y N N N N N 2.515 -0.547 12.613 -3.980 3.005 -1.075 C6 0LI 5
0LI C7 C7 C 0 1 Y N N N N N 2.576 0.870 12.517 -2.739 3.600 -1.178 C7 0LI 6
0LI C8 C8 C 0 1 Y N N N N N 3.249 1.649 13.552 -1.602 2.910 -0.809 C8 0LI 7
0LI C10 C10 C 0 1 Y N N N N N 3.777 -0.467 14.751 -2.948 0.995 -0.215 C10 0LI 8
0LI C13 C13 C 0 1 Y N N N N N 5.504 3.889 16.406 1.889 0.722 0.224 C13 0LI 9
0LI C15 C15 C 0 1 Y N N N N N 6.149 6.189 17.002 3.101 -1.346 0.153 C15 0LI 10
0LI C17 C17 C 0 1 Y N N N N N 7.482 4.291 17.886 4.131 0.615 1.070 C17 0LI 11
0LI C20 C20 C 0 1 N N N N N N 8.114 6.776 18.492 5.440 -1.518 1.026 C20 0LI 12
0LI C21 C21 C 0 1 N N N N N N 6.485 7.358 20.245 7.773 -1.695 0.401 C21 0LI 13
0LI C22 C22 C 0 1 N N N N N N 5.598 8.519 20.760 8.795 -1.320 -0.675 C22 0LI 14
0LI C24 C24 C 0 1 N N N N N N 8.236 8.913 19.614 6.051 -1.862 -1.292 C24 0LI 15
0LI C81 C81 C 0 1 Y N N N N N 2.335 -8.423 15.347 -9.906 -2.715 0.492 C81 0LI 16
0LI C82 C82 C 0 1 Y N N N N N 1.217 -8.107 16.118 -9.079 -3.701 0.942 C82 0LI 17
0LI C83 C83 C 0 1 Y N N N N N 0.796 -6.738 16.213 -7.697 -3.489 0.997 C83 0LI 18
0LI N81 N81 N 0 1 Y N N N N N 1.392 -5.697 15.611 -7.177 -2.350 0.621 N81 0LI 19
0LI N82 N82 N 0 1 Y N N N N N 2.483 -6.066 14.867 -7.992 -1.315 0.154 N82 0LI 20
0LI C84 C84 C 0 1 Y N N N N N 3.024 -7.378 14.677 -9.351 -1.487 0.086 C84 0LI 21
0LI C1 C1 C 0 1 Y N N N N N 4.266 -6.004 13.563 -8.945 0.522 -0.627 C1 0LI 22
0LI C2 C2 C 0 1 Y N N N N N 3.298 -5.245 14.144 -7.725 -0.045 -0.296 C2 0LI 23
0LI C3 C3 C 0 1 N N N N N N 3.169 -3.856 14.026 -6.437 0.572 -0.402 C3 0LI 24
0LI C9 C9 C 0 1 Y N N N N N 3.854 0.963 14.680 -1.699 1.601 -0.328 C9 0LI 25
0LI C11 C11 C 0 1 N N N N N N 1.808 -1.336 11.501 -5.216 3.767 -1.481 C11 0LI 26
0LI C12 C12 C 0 1 N N N N N N 4.561 1.671 15.778 -0.479 0.865 0.067 C12 0LI 27
0LI O1 O1 O 0 1 N N N N N N 5.070 1.013 16.693 -0.565 -0.273 0.485 O1 0LI 28
0LI N2 N2 N 0 1 N N N N N N 4.599 3.033 15.704 0.728 1.455 -0.038 N2 0LI 29
0LI C14 C14 C 0 1 Y N N N N N 5.289 5.281 16.321 1.952 -0.625 -0.108 C14 0LI 30
0LI C16 C16 C 0 1 Y N N N N N 7.243 5.725 17.785 4.188 -0.728 0.743 C16 0LI 31
0LI C18 C18 C 0 1 Y N N N N N 6.602 3.400 17.189 2.985 1.341 0.812 C18 0LI 32
0LI C19 C19 C 0 1 N N N N N N 8.622 3.701 18.702 5.318 1.284 1.714 C19 0LI 33
0LI F1 F1 F 0 1 N N N N N N 8.421 3.953 19.986 4.988 2.603 2.042 F1 0LI 34
0LI F2 F2 F 0 1 N N N N N N 8.705 2.381 18.578 5.672 0.589 2.875 F2 0LI 35
0LI F3 F3 F 0 1 N N N N N N 9.794 4.235 18.291 6.395 1.281 0.821 F3 0LI 36
0LI C23 C23 C 0 1 N N N N N N 7.382 10.100 20.103 7.073 -1.487 -2.368 C23 0LI 37
0LI C25 C25 C 0 1 N N N N N N 5.569 10.809 21.578 9.406 -1.664 -2.993 C25 0LI 38
0LI N4 N4 N 0 1 N N N N N N 6.422 9.688 21.171 8.408 -1.939 -1.951 N4 0LI 39
0LI H7 H7 H 0 1 N N N N N N 2.123 1.372 11.675 -2.657 4.611 -1.550 H7 0LI 40
0LI H8 H8 H 0 1 N N N N N N 3.297 2.726 13.480 -0.634 3.382 -0.893 H8 0LI 41
0LI H10 H10 H 0 1 N N N N N N 4.227 -0.981 15.588 -3.029 -0.015 0.160 H10 0LI 42
0LI H15 H15 H 0 1 N N N N N N 5.967 7.251 16.923 3.151 -2.394 -0.105 H15 0LI 43
0LI H20 H20 H 0 1 N N N N N N 8.780 7.236 17.747 5.204 -2.582 1.032 H20 0LI 44
0LI H20A H20A H 0 0 N N N N N N 8.717 6.270 19.260 5.840 -1.229 1.998 H20A 0LI 45
0LI H21 H21 H 0 1 N N N N N N 5.842 6.539 19.891 8.042 -1.214 1.341 H21 0LI 46
0LI H21A H21A H 0 0 N N N N N N 7.122 6.996 21.066 7.766 -2.777 0.535 H21A 0LI 47
0LI H22 H22 H 0 1 N N N N N N 4.912 8.829 19.958 8.822 -0.237 -0.790 H22 0LI 48
0LI H22A H22A H 0 0 N N N N N N 5.016 8.169 21.625 9.781 -1.680 -0.381 H22A 0LI 49
0LI H24 H24 H 0 1 N N N N N N 8.853 8.538 20.444 6.024 -2.946 -1.177 H24 0LI 50
0LI H24A H24A H 0 0 N N N N N N 8.889 9.245 18.793 5.065 -1.502 -1.586 H24A 0LI 51
0LI H81 H81 H 0 1 N N N N N N 2.671 -9.446 15.261 -10.973 -2.874 0.448 H81 0LI 52
0LI H82 H82 H 0 1 N N N N N N 0.674 -8.883 16.637 -9.492 -4.648 1.256 H82 0LI 53
0LI H83 H83 H 0 1 N N N N N N -0.073 -6.528 16.819 -7.051 -4.277 1.356 H83 0LI 54
0LI H1 H1 H 0 1 N N N N N N 5.056 -5.620 12.935 -9.095 1.518 -1.016 H1 0LI 55
0LI H11 H11 H 0 1 N N N N N N 0.744 -1.454 11.754 -5.607 4.310 -0.620 H11 0LI 56
0LI H11A H11A H 0 0 N N N N N N 1.901 -0.792 10.550 -4.964 4.473 -2.272 H11A 0LI 57
0LI H11B H11B H 0 0 N N N N N N 2.273 -2.328 11.403 -5.970 3.069 -1.844 H11B 0LI 58
0LI HN2 HN2 H 0 1 N N N N N N 3.932 3.473 15.103 0.790 2.388 -0.295 HN2 0LI 59
0LI H14 H14 H 0 1 N N N N N N 4.465 5.661 15.735 1.103 -1.108 -0.568 H14 0LI 60
0LI H18 H18 H 0 1 N N N N N N 6.770 2.335 17.255 2.941 2.390 1.067 H18 0LI 61
0LI H23 H23 H 0 1 N N N N N N 8.049 10.878 20.504 6.804 -1.969 -3.308 H23 0LI 62
0LI H23A H23A H 0 0 N N N N N N 6.816 10.506 19.252 7.080 -0.406 -2.502 H23A 0LI 63
0LI H25 H25 H 0 1 N N N N N N 6.199 11.660 21.877 10.371 -2.069 -2.687 H25 0LI 64
0LI H25A H25A H 0 0 N N N N N N 4.927 11.106 20.735 9.095 -2.134 -3.927 H25A 0LI 65
0LI H25B H25B H 0 0 N N N N N N 4.941 10.502 22.427 9.493 -0.588 -3.139 H25B 0LI 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0LI N1 C84 DOUB Y N 1
0LI N1 C1 SING Y N 2
0LI N3 C20 SING N N 3
0LI N3 C21 SING N N 4
0LI N3 C24 SING N N 5
0LI C4 C5 SING N N 6
0LI C4 C3 TRIP N N 7
0LI C5 C6 DOUB Y N 8
0LI C5 C10 SING Y N 9
0LI C6 C7 SING Y N 10
0LI C6 C11 SING N N 11
0LI C7 C8 DOUB Y N 12
0LI C7 H7 SING N N 13
0LI C8 C9 SING Y N 14
0LI C8 H8 SING N N 15
0LI C10 C9 DOUB Y N 16
0LI C10 H10 SING N N 17
0LI C13 N2 SING N N 18
0LI C13 C14 DOUB Y N 19
0LI C13 C18 SING Y N 20
0LI C15 C14 SING Y N 21
0LI C15 C16 DOUB Y N 22
0LI C15 H15 SING N N 23
0LI C17 C16 SING Y N 24
0LI C17 C18 DOUB Y N 25
0LI C17 C19 SING N N 26
0LI C20 C16 SING N N 27
0LI C20 H20 SING N N 28
0LI C20 H20A SING N N 29
0LI C21 C22 SING N N 30
0LI C21 H21 SING N N 31
0LI C21 H21A SING N N 32
0LI C22 N4 SING N N 33
0LI C22 H22 SING N N 34
0LI C22 H22A SING N N 35
0LI C24 C23 SING N N 36
0LI C24 H24 SING N N 37
0LI C24 H24A SING N N 38
0LI C81 C82 DOUB Y N 39
0LI C81 C84 SING Y N 40
0LI C81 H81 SING N N 41
0LI C82 C83 SING Y N 42
0LI C82 H82 SING N N 43
0LI C83 N81 DOUB Y N 44
0LI C83 H83 SING N N 45
0LI N81 N82 SING Y N 46
0LI N82 C84 SING Y N 47
0LI N82 C2 SING Y N 48
0LI C1 C2 DOUB Y N 49
0LI C1 H1 SING N N 50
0LI C2 C3 SING N N 51
0LI C9 C12 SING N N 52
0LI C11 H11 SING N N 53
0LI C11 H11A SING N N 54
0LI C11 H11B SING N N 55
0LI C12 O1 DOUB N N 56
0LI C12 N2 SING N N 57
0LI N2 HN2 SING N N 58
0LI C14 H14 SING N N 59
0LI C18 H18 SING N N 60
0LI C19 F1 SING N N 61
0LI C19 F2 SING N N 62
0LI C19 F3 SING N N 63
0LI C23 N4 SING N N 64
0LI C23 H23 SING N N 65
0LI C23 H23A SING N N 66
0LI C25 N4 SING N N 67
0LI C25 H25 SING N N 68
0LI C25 H25A SING N N 69
0LI C25 H25B SING N N 70
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0LI SMILES ACDLabs 12.01 "FC(F)(F)c1cc(ccc1CN2CCN(C)CC2)NC(=O)c5cc(C#Cc3cnc4cccnn34)c(cc5)C"
0LI InChI InChI 1.03 InChI=1S/C29H27F3N6O/c1-20-5-6-22(16-21(20)8-10-25-18-33-27-4-3-11-34-38(25)27)28(39)35-24-9-7-23(26(17-24)29(30,31)32)19-37-14-12-36(2)13-15-37/h3-7,9,11,16-18H,12-15,19H2,1-2H3,(H,35,39)
0LI InChIKey InChI 1.03 PHXJVRSECIGDHY-UHFFFAOYSA-N
0LI SMILES_CANONICAL CACTVS 3.370 "CN1CCN(CC1)Cc2ccc(NC(=O)c3ccc(C)c(c3)C#Cc4cnc5cccnn45)cc2C(F)(F)F"
0LI SMILES CACTVS 3.370 "CN1CCN(CC1)Cc2ccc(NC(=O)c3ccc(C)c(c3)C#Cc4cnc5cccnn45)cc2C(F)(F)F"
0LI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1ccc(cc1C#Cc2cnc3n2nccc3)C(=O)Nc4ccc(c(c4)C(F)(F)F)CN5CCN(CC5)C"
0LI SMILES "OpenEye OEToolkits" 1.7.6 "Cc1ccc(cc1C#Cc2cnc3n2nccc3)C(=O)Nc4ccc(c(c4)C(F)(F)F)CN5CCN(CC5)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0LI "SYSTEMATIC NAME" ACDLabs 12.01 3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzamide
0LI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 3-(2-imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-[4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0LI 'Create component' 2009-08-06 RCSB
0LI 'Modify descriptor' 2011-06-04 RCSB
0LI 'Modify synonyms' 2012-02-25 RCSB
0LI 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0LI
_pdbx_chem_comp_synonyms.name Ponatinib
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 0LI
_pdbe_chem_comp_drugbank_details.drugbank_id DB08901
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Ponatinib
_pdbe_chem_comp_drugbank_details.description
'Ponatinib is a novel Bcr-Abl tyrosine kinase inhibitor that is especially effective against the T315I mutation for the treatment of chronic myeloid leukemia. FDA approved on December 14, 2012.'
_pdbe_chem_comp_drugbank_details.cas_number 943319-70-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Ponatinib is a multi-target kinase inhibitor. Its primary cellular target is the Bcr-Abl tyrosine kinase protein which is constitutively active and promotes the progression of CML. This protein arises from the fused Bcr and Abl gene- what is commonly known as the Philadelphia chromosome. Ponatinib is unique in that it is especially useful in the treatment of resistant CML because it inhibits the tyrosine kinase activity of Abl and T315I mutant kinases. The T315I mutation confers resistance in cells as it prevents other Bcr-Abl inhibitors from binding to the Abl kinase. Other targets that ponatinib inhibits are members of the VEGFR, PDGFR, FGFR, EPH receptors and SRC families of kinases, and KIT, RET, TIE2, and FLT3.[L52425] A decrease in tumour size expressing native or T315I mutant BCR-ABL have been observed in rats.[L52425]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
0LI Ponatinib wwPDB ?
0LI Ponatinib DrugBank ?
0LI Ponatinibum DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 0LI
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08901
_pdbe_chem_comp_drugbank_classification.parent Benzanilides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as benzanilides. These are aromatic compounds containing an anilide group in which the carboxamide group is substituted with a benzene ring. They have the general structure RNC(=O)R', where R,R'= benzene."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
0LI DB08901 'Tyrosine-protein kinase ABL1' Humans P00519 yes 1
0LI DB08901 'Breakpoint cluster region protein' Humans P11274 yes 2
0LI DB08901 'Mast/stem cell growth factor receptor Kit' Humans P10721 unknown 3
0LI DB08901 'Proto-oncogene tyrosine-protein kinase receptor Ret' Humans P07949 unknown 4
0LI DB08901 'Angiopoietin-1 receptor' Humans Q02763 unknown 5
0LI DB08901 'Receptor-type tyrosine-protein kinase FLT3' Humans P36888 unknown 6
0LI DB08901 'Fibroblast growth factor receptor 1' Humans P11362 unknown 7
0LI DB08901 'Fibroblast growth factor receptor 2' Humans P21802 unknown 8
0LI DB08901 'Fibroblast growth factor receptor 3' Humans P22607 unknown 9
0LI DB08901 'Fibroblast growth factor receptor 4' Humans P22455 unknown 10
0LI DB08901 'Tyrosine-protein kinase Lck' Humans P06239 unknown 11
0LI DB08901 'Proto-oncogene tyrosine-protein kinase Src' Humans P12931 unknown 12
0LI DB08901 'Tyrosine-protein kinase Lyn' Humans P07948 unknown 13
0LI DB08901 'Vascular endothelial growth factor receptor 2' Humans P35968 unknown 14
0LI DB08901 'Platelet-derived growth factor receptor alpha' Humans P16234 unknown 15
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0LI N1 N 12.552 8.997 1
0LI N3 N 7.403 -6.936 2
0LI C4 C 13.484 3.731 3
0LI C5 C 13.950 2.305 4
0LI C6 C 15.417 1.996 5
0LI C7 C 15.883 0.570 6
0LI C8 C 14.882 -0.546 7
0LI C10 C 12.948 1.189 8
0LI C13 C 11.876 -3.896 9
0LI C15 C 9.407 -4.703 10
0LI C17 C 11.341 -6.438 11
0LI C20 C 8.871 -7.245 12
0LI C21 C 6.937 -5.510 13
0LI C22 C 5.470 -5.201 14
0LI C24 C 6.402 -8.052 15
0LI C81 C 9.833 9.290 16
0LI C82 C 8.534 8.540 17
0LI C83 C 8.534 7.040 18
0LI N81 N 9.833 6.290 19
0LI N82 N 11.132 7.040 20
0LI C84 C 11.132 8.540 21
0LI C1 C 13.427 7.790 22
0LI C2 C 12.552 6.582 23
0LI C3 C 13.018 5.157 24
0LI C9 C 13.414 -0.237 25
0LI C11 C 16.419 3.112 26
0LI C12 C 12.412 -1.354 27
0LI O1 O 10.944 -1.044 28
0LI N2 N 12.878 -2.779 29
0LI C14 C 10.409 -3.587 30
0LI C16 C 9.873 -6.129 31
0LI C18 C 12.342 -5.322 32
0LI C19 C 11.806 -7.864 33
0LI F1 F 12.273 -9.290 34
0LI F2 F 13.232 -7.398 35
0LI F3 F 10.381 -8.330 36
0LI C23 C 4.934 -7.743 37
0LI C25 C 3.000 -6.008 38
0LI N4 N 4.468 -6.317 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0LI N1 C84 DOUBLE NONE 1
0LI N1 C1 SINGLE NONE 2
0LI N3 C20 SINGLE NONE 3
0LI N3 C21 SINGLE NONE 4
0LI N3 C24 SINGLE NONE 5
0LI C4 C5 SINGLE NONE 6
0LI C4 C3 TRIPLE NONE 7
0LI C5 C6 DOUBLE NONE 8
0LI C5 C10 SINGLE NONE 9
0LI C6 C7 SINGLE NONE 10
0LI C6 C11 SINGLE NONE 11
0LI C7 C8 DOUBLE NONE 12
0LI C8 C9 SINGLE NONE 13
0LI C10 C9 DOUBLE NONE 14
0LI C13 N2 SINGLE NONE 15
0LI C13 C14 SINGLE NONE 16
0LI C13 C18 DOUBLE NONE 17
0LI C15 C14 DOUBLE NONE 18
0LI C15 C16 SINGLE NONE 19
0LI C17 C16 DOUBLE NONE 20
0LI C17 C18 SINGLE NONE 21
0LI C17 C19 SINGLE NONE 22
0LI C20 C16 SINGLE NONE 23
0LI C21 C22 SINGLE NONE 24
0LI C22 N4 SINGLE NONE 25
0LI C24 C23 SINGLE NONE 26
0LI C81 C82 DOUBLE NONE 27
0LI C81 C84 SINGLE NONE 28
0LI C82 C83 SINGLE NONE 29
0LI C83 N81 DOUBLE NONE 30
0LI N81 N82 SINGLE NONE 31
0LI N82 C84 SINGLE NONE 32
0LI N82 C2 SINGLE NONE 33
0LI C1 C2 DOUBLE NONE 34
0LI C2 C3 SINGLE NONE 35
0LI C9 C12 SINGLE NONE 36
0LI C12 O1 DOUBLE NONE 37
0LI C12 N2 SINGLE NONE 38
0LI C19 F1 SINGLE NONE 39
0LI C19 F2 SINGLE NONE 40
0LI C19 F3 SINGLE NONE 41
0LI C23 N4 SINGLE NONE 42
0LI C25 N4 SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0LI MurckoScaffold S1 scaffold 'O=C(Nc1ccc(CN2CCNCC2)cc1)c1cccc(C#Cc2cnc3cccnn23)c1' InChI=1S/C26H24N6O/c33-26(30-23-9-6-21(7-10-23)19-31-15-13-27-14-16-31)22-4-1-3-20(17-22)8-11-24-18-28-25-5-2-12-29-32(24)25/h1-7,9-10,12,17-18,27H,13-16,19H2,(H,30,33) HDQOCYRILGMBAT-UHFFFAOYSA-N
0LI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
0LI imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
0LI phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
0LI piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
0LI pyridazine F5 fragment c1ccnnc1 InChI=1S/C4H4N2/c1-2-4-6-5-3-1/h1-4H PBMFSQRYOILNGV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0LI N1 S1 1
0LI N3 S1 1
0LI C4 S1 1
0LI C5 S1 1
0LI C6 S1 1
0LI C7 S1 1
0LI C8 S1 1
0LI C10 S1 1
0LI C13 S1 1
0LI C15 S1 1
0LI C17 S1 1
0LI C20 S1 1
0LI C21 S1 1
0LI C22 S1 1
0LI C24 S1 1
0LI C81 S1 1
0LI C82 S1 1
0LI C83 S1 1
0LI N81 S1 1
0LI N82 S1 1
0LI C84 S1 1
0LI C1 S1 1
0LI C2 S1 1
0LI C3 S1 1
0LI C9 S1 1
0LI C12 S1 1
0LI O1 S1 1
0LI N2 S1 1
0LI C14 S1 1
0LI C16 S1 1
0LI C18 S1 1
0LI C23 S1 1
0LI N4 S1 1
0LI N2 F1 1
0LI C12 F1 1
0LI O1 F1 1
0LI C9 F1 1
0LI C1 F2 1
0LI C2 F2 1
0LI N82 F2 1
0LI C84 F2 1
0LI N1 F2 1
0LI C5 F3 1
0LI C6 F3 1
0LI C7 F3 1
0LI C8 F3 1
0LI C9 F3 1
0LI C10 F3 1
0LI C13 F3 2
0LI C14 F3 2
0LI C15 F3 2
0LI C16 F3 2
0LI C17 F3 2
0LI C18 F3 2
0LI N3 F4 1
0LI C21 F4 1
0LI C22 F4 1
0LI N4 F4 1
0LI C23 F4 1
0LI C24 F4 1
0LI C81 F5 1
0LI C84 F5 1
0LI N82 F5 1
0LI N81 F5 1
0LI C83 F5 1
0LI C82 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0LI
_pdbe_chem_comp_rdkit_properties.exactmw 532.220
_pdbe_chem_comp_rdkit_properties.amw 532.570
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.276
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 261.799
_pdbe_chem_comp_rdkit_properties.tpsa 65.770
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.533
_pdbe_chem_comp_rdkit_properties.CrippenMR 138.794
_pdbe_chem_comp_rdkit_properties.chi0v 18.725
_pdbe_chem_comp_rdkit_properties.chi1v 10.128
_pdbe_chem_comp_rdkit_properties.chi2v 4.460
_pdbe_chem_comp_rdkit_properties.chi3v 4.460
_pdbe_chem_comp_rdkit_properties.chi4v 2.783
_pdbe_chem_comp_rdkit_properties.chi0n 45.725
_pdbe_chem_comp_rdkit_properties.chi1n 23.575
_pdbe_chem_comp_rdkit_properties.chi2n 4.460
_pdbe_chem_comp_rdkit_properties.chi3n 4.460
_pdbe_chem_comp_rdkit_properties.chi4n 2.783
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.200
_pdbe_chem_comp_rdkit_properties.kappa1 9.182
_pdbe_chem_comp_rdkit_properties.kappa2 10.885
_pdbe_chem_comp_rdkit_properties.kappa3 6.109
_pdbe_chem_comp_rdkit_properties.Phi 2.563
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0LI UniChem DrugBank DB08901
0LI UniChem 'Guide to Pharmacology' 5890
0LI UniChem 'PubChem DOTF' 136350016
0LI UniChem ChEBI 78543
0LI UniChem ZINC ZINC000036701290
0LI UniChem fdasrs 4340891KFS
0LI UniChem PharmGKB PA165980594
0LI UniChem HMDB HMDB0240214
0LI UniChem Selleck AP24534
0LI UniChem PubChem 24826799
0LI UniChem LINCS LSM-1151
0LI UniChem Nikkaji J2.843.862A
0LI UniChem BindingDb 50322535
0LI UniChem 'EPA CompTox Dashboard' DTXSID50241426
0LI UniChem DrugCentral 4716
0LI UniChem BRENDA 213585
0LI UniChem BRENDA 227977
0LI UniChem ChemicalBook CB12518324
0LI UniChem DailyMed PONATINIB
0LI UniChem ClinicalTrials AP-24534
0LI UniChem ClinicalTrials 'AP-24534 HCL'
0LI UniChem ClinicalTrials AP24534
0LI UniChem ClinicalTrials 'AP24534 HCL'
0LI UniChem ClinicalTrials ICLUSIG
0LI UniChem ClinicalTrials PONATINIB
0LI UniChem ClinicalTrials 'PONATINIB HYDROCHLORIDE'
0LI UniChem rxnorm ICLUSIG
0LI UniChem rxnorm PONATINIB
0LI UniChem rxnorm 'PONATINIB HYDROCHLORIDE'
0LI UniChem MedChemExpress HY-12047
0LI UniChem 'Probes And Drugs' PD004100
0LI UniChem CCDC RUTLUP
0LI UniChem eMolecules 32176636
0LI UniChem SureChEMBL SCHEMBL589260
0LI UniChem 'PubChem TPHARMA' 49848164
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0LI N1 9.835 0.978 2.539 ETKDGv3 1
0LI N3 -6.466 0.264 0.538 ETKDGv3 2
0LI C4 5.944 0.211 -0.262 ETKDGv3 3
0LI C5 4.687 -0.003 -0.938 ETKDGv3 4
0LI C6 4.625 -0.611 -2.144 ETKDGv3 5
0LI C7 3.303 -0.808 -2.785 ETKDGv3 6
0LI C8 2.185 -0.382 -2.187 ETKDGv3 7
0LI C10 3.446 0.466 -0.280 ETKDGv3 8
0LI C13 -1.509 1.015 -0.383 ETKDGv3 9
0LI C15 -3.060 0.245 1.339 ETKDGv3 10
0LI C17 -3.857 1.793 -0.398 ETKDGv3 11
0LI C20 -5.504 1.016 1.370 ETKDGv3 12
0LI C21 -6.244 -1.205 0.595 ETKDGv3 13
0LI C22 -7.246 -1.918 1.518 ETKDGv3 14
0LI C24 -7.856 0.663 0.858 ETKDGv3 15
0LI C81 11.815 0.227 1.286 ETKDGv3 16
0LI C82 12.148 -0.449 0.173 ETKDGv3 17
0LI C83 11.117 -0.814 -0.849 ETKDGv3 18
0LI N81 9.875 -0.434 -0.714 ETKDGv3 19
0LI N82 9.525 0.374 0.379 ETKDGv3 20
0LI C84 10.416 0.615 1.441 ETKDGv3 21
0LI C1 8.435 0.985 2.214 ETKDGv3 22
0LI C2 8.256 0.590 0.959 ETKDGv3 23
0LI C3 6.997 0.386 0.299 ETKDGv3 24
0LI C9 2.247 0.301 -0.870 ETKDGv3 25
0LI C11 5.863 -1.103 -2.848 ETKDGv3 26
0LI C12 1.006 0.772 -0.209 ETKDGv3 27
0LI O1 1.016 1.033 1.026 ETKDGv3 28
0LI N2 -0.196 0.979 -0.969 ETKDGv3 29
0LI C14 -1.830 0.219 0.821 ETKDGv3 30
0LI C16 -4.135 1.061 0.719 ETKDGv3 31
0LI C18 -2.478 1.739 -0.965 ETKDGv3 32
0LI C19 -4.895 2.661 -1.091 ETKDGv3 33
0LI F1 -5.927 1.879 -1.572 ETKDGv3 34
0LI F2 -4.348 3.343 -2.165 ETKDGv3 35
0LI F3 -5.398 3.602 -0.213 ETKDGv3 36
0LI C23 -8.856 -0.401 0.394 ETKDGv3 37
0LI C25 -9.193 -2.802 0.338 ETKDGv3 38
0LI N4 -8.655 -1.676 1.119 ETKDGv3 39
0LI H7 3.233 -1.309 -3.743 ETKDGv3 40
0LI H8 1.234 -0.562 -2.670 ETKDGv3 41
0LI H10 3.522 0.957 0.683 ETKDGv3 42
0LI H15 -3.270 -0.353 2.217 ETKDGv3 43
0LI H20 -5.852 2.057 1.540 ETKDGv3 44
0LI H20A -5.444 0.562 2.385 ETKDGv3 45
0LI H21 -6.353 -1.615 -0.432 ETKDGv3 46
0LI H21A -5.212 -1.460 0.920 ETKDGv3 47
0LI H22 -7.104 -1.540 2.553 ETKDGv3 48
0LI H22A -7.006 -3.005 1.550 ETKDGv3 49
0LI H24 -7.988 0.818 1.954 ETKDGv3 50
0LI H24A -8.085 1.622 0.345 ETKDGv3 51
0LI H81 12.549 0.446 2.051 ETKDGv3 52
0LI H82 13.171 -0.769 0.028 ETKDGv3 53
0LI H83 11.400 -1.422 -1.697 ETKDGv3 54
0LI H1 7.647 1.219 2.918 ETKDGv3 55
0LI H11 5.613 -1.560 -3.829 ETKDGv3 56
0LI H11A 6.371 -1.870 -2.226 ETKDGv3 57
0LI H11B 6.558 -0.256 -3.027 ETKDGv3 58
0LI HN2 -0.100 1.212 -1.983 ETKDGv3 59
0LI H14 -1.080 -0.414 1.278 ETKDGv3 60
0LI H18 -2.239 2.301 -1.859 ETKDGv3 61
0LI H23 -9.887 -0.035 0.587 ETKDGv3 62
0LI H23A -8.739 -0.533 -0.707 ETKDGv3 63
0LI H25 -9.193 -3.726 0.955 ETKDGv3 64
0LI H25A -10.247 -2.600 0.048 ETKDGv3 65
0LI H25B -8.589 -2.976 -0.579 ETKDGv3 66
#