HEADER PROTEIN BINDING 26-MAY-21 7ONW TITLE CRYSTAL STRUCTURE OF PBP3 FROM E. COLI IN COMPLEX WITH AIC499 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ESSENTIAL CELL DIVISION PROTEIN FTSI,MUREIN TRANSPEPTIDASE, COMPND 5 PENICILLIN-BINDING PROTEIN 3,PBP-3,PEPTIDOGLYCAN SYNTHASE FTSI; COMPND 6 EC: 3.4.16.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FTSI, PBPB, B0084, JW0082; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MONOBACTAM, PBP3, PEPTIDOGLYCAN SYNTHESIS, DRUG COMPLEX, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.FREISCHEM,I.GRIMM,O.H.WEIERGRAEBER REVDAT 3 31-JAN-24 7ONW 1 REMARK REVDAT 2 22-SEP-21 7ONW 1 JRNL REVDAT 1 04-AUG-21 7ONW 0 JRNL AUTH S.FREISCHEM,I.GRIMM,A.LOPEZ-PEREZ,D.WILLBOLD,B.KLENKE, JRNL AUTH 2 C.VUONG,A.J.DINGLEY,O.H.WEIERGRABER JRNL TITL INTERACTION MODE OF THE NOVEL MONOBACTAM AIC499 TARGETING JRNL TITL 2 PENICILLIN BINDING PROTEIN 3 OF GRAM-NEGATIVE BACTERIA. JRNL REF BIOMOLECULES V. 11 2021 JRNL REFN ESSN 2218-273X JRNL PMID 34356681 JRNL DOI 10.3390/BIOM11071057 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 51.1 REMARK 3 NUMBER OF REFLECTIONS : 13994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.450 REMARK 3 FREE R VALUE TEST SET COUNT : 762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6400 - 4.6200 1.00 5458 331 0.2241 0.2679 REMARK 3 2 4.6200 - 3.6700 0.89 4610 269 0.2277 0.2579 REMARK 3 3 3.6700 - 3.2100 0.37 1892 101 0.2702 0.3292 REMARK 3 4 3.2100 - 2.9100 0.19 947 46 0.3336 0.3021 REMARK 3 5 2.9100 - 2.7000 0.06 325 15 0.3947 0.3886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3656 REMARK 3 ANGLE : 0.672 4996 REMARK 3 CHIRALITY : 0.042 570 REMARK 3 PLANARITY : 0.004 653 REMARK 3 DIHEDRAL : 10.215 1291 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 62:200 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4510 -27.4024 -0.6024 REMARK 3 T TENSOR REMARK 3 T11: 0.4879 T22: 1.5918 REMARK 3 T33: 1.0376 T12: 0.0033 REMARK 3 T13: 0.0822 T23: 0.3248 REMARK 3 L TENSOR REMARK 3 L11: 1.2208 L22: 3.2755 REMARK 3 L33: 1.2479 L12: 1.0745 REMARK 3 L13: 0.1978 L23: 0.5146 REMARK 3 S TENSOR REMARK 3 S11: 0.1054 S12: -0.3463 S13: -0.5932 REMARK 3 S21: 0.5566 S22: -0.0476 S23: 0.7982 REMARK 3 S31: 0.4029 S32: -0.4238 S33: -0.0532 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 201:570 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9987 8.0564 -23.8005 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 1.4761 REMARK 3 T33: 0.3434 T12: -0.2986 REMARK 3 T13: -0.0622 T23: 0.1803 REMARK 3 L TENSOR REMARK 3 L11: 0.7498 L22: 0.4301 REMARK 3 L33: 0.1922 L12: 0.0883 REMARK 3 L13: 0.0720 L23: 0.0286 REMARK 3 S TENSOR REMARK 3 S11: -0.1281 S12: 0.1160 S13: 0.0695 REMARK 3 S21: -0.2075 S22: 0.3420 S23: -0.0145 REMARK 3 S31: -0.0990 S32: 0.1076 S33: 0.0487 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ONW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292116102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4BJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PBP3, 3% DEXTRAN SULFATE (M REMARK 280 -5000), 0.1 M SODIUM CACODYLATE, 5% PEG 8000, 30% (V/V) MPD. 0.5 REMARK 280 MM AIC499, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.27667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 190.55333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.27667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 190.55333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.27667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 190.55333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 95.27667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 190.55333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 GLY A 37 REMARK 465 LEU A 38 REMARK 465 VAL A 39 REMARK 465 PRO A 40 REMARK 465 ARG A 41 REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 HIS A 44 REMARK 465 MET A 45 REMARK 465 ALA A 46 REMARK 465 SER A 47 REMARK 465 MET A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 ASP A 51 REMARK 465 MET A 52 REMARK 465 LEU A 53 REMARK 465 VAL A 54 REMARK 465 LYS A 55 REMARK 465 GLU A 56 REMARK 465 GLY A 57 REMARK 465 ASP A 58 REMARK 465 MET A 59 REMARK 465 ARG A 60 REMARK 465 SER A 61 REMARK 465 PRO A 204 REMARK 465 GLY A 205 REMARK 465 GLU A 206 REMARK 465 ARG A 207 REMARK 465 ILE A 208 REMARK 465 VAL A 209 REMARK 465 ARG A 210 REMARK 465 LYS A 211 REMARK 465 ASP A 212 REMARK 465 ARG A 213 REMARK 465 TYR A 214 REMARK 465 GLY A 215 REMARK 465 ARG A 216 REMARK 465 VAL A 217 REMARK 465 ILE A 218 REMARK 465 GLU A 219 REMARK 465 ASP A 220 REMARK 465 ILE A 221 REMARK 465 SER A 222 REMARK 465 SER A 223 REMARK 465 THR A 224 REMARK 465 ASP A 225 REMARK 465 SER A 226 REMARK 465 GLN A 227 REMARK 465 GLY A 571 REMARK 465 ASP A 572 REMARK 465 LYS A 573 REMARK 465 ASN A 574 REMARK 465 GLU A 575 REMARK 465 PHE A 576 REMARK 465 VAL A 577 REMARK 465 ILE A 578 REMARK 465 ASN A 579 REMARK 465 GLN A 580 REMARK 465 GLY A 581 REMARK 465 GLU A 582 REMARK 465 GLY A 583 REMARK 465 THR A 584 REMARK 465 GLY A 585 REMARK 465 GLY A 586 REMARK 465 ARG A 587 REMARK 465 SER A 588 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 62 CG CD1 CD2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 64 CG1 CG2 REMARK 470 GLN A 66 CG CD OE1 NE2 REMARK 470 THR A 69 OG1 CG2 REMARK 470 SER A 70 OG REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ILE A 91 CG1 CG2 CD1 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 HIS A 99 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 SER A 105 OG REMARK 470 VAL A 106 CG1 CG2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LEU A 117 CD1 CD2 REMARK 470 ILE A 119 CG1 CG2 CD1 REMARK 470 LEU A 121 CG CD1 CD2 REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 LEU A 124 CG CD1 CD2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 137 CG1 CG2 CD1 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 MET A 147 CG SD CE REMARK 470 ILE A 151 CG1 CG2 CD1 REMARK 470 LYS A 152 CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 ILE A 159 CG1 CG2 CD1 REMARK 470 LEU A 161 CD1 CD2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 ILE A 236 CG1 CG2 CD1 REMARK 470 SER A 287 OG REMARK 470 LYS A 291 CD CE NZ REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 336 CG1 CG2 CD1 REMARK 470 ASN A 337 CG OD1 ND2 REMARK 470 HIS A 339 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 342 CD CE NZ REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 ARG A 506 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 539 CG CD CE NZ REMARK 470 LEU A 568 CG CD1 CD2 REMARK 470 THR A 569 OG1 CG2 REMARK 470 THR A 570 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 68 73.76 -151.95 REMARK 500 ALA A 83 104.12 -163.48 REMARK 500 ASP A 108 -146.80 58.77 REMARK 500 GLU A 164 -167.61 -110.21 REMARK 500 MET A 275 83.11 -162.71 REMARK 500 SER A 280 -166.96 -118.09 REMARK 500 THR A 515 108.45 -162.53 REMARK 500 ARG A 525 -30.13 -132.54 REMARK 500 ASP A 534 76.34 62.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ONN RELATED DB: PDB DBREF 7ONW A 49 588 UNP P0AD68 FTSI_ECOLI 49 588 SEQADV 7ONW MET A 25 UNP P0AD68 INITIATING METHIONINE SEQADV 7ONW GLY A 26 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW SER A 27 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW SER A 28 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW HIS A 29 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW HIS A 30 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW HIS A 31 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW HIS A 32 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW HIS A 33 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW HIS A 34 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW SER A 35 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW SER A 36 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW GLY A 37 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW LEU A 38 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW VAL A 39 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW PRO A 40 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW ARG A 41 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW GLY A 42 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW SER A 43 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW HIS A 44 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW MET A 45 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW ALA A 46 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW SER A 47 UNP P0AD68 EXPRESSION TAG SEQADV 7ONW MET A 48 UNP P0AD68 EXPRESSION TAG SEQRES 1 A 564 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 564 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET SER PRO SEQRES 3 A 564 ASP MET LEU VAL LYS GLU GLY ASP MET ARG SER LEU ARG SEQRES 4 A 564 VAL GLN GLN VAL SER THR SER ARG GLY MET ILE THR ASP SEQRES 5 A 564 ARG SER GLY ARG PRO LEU ALA VAL SER VAL PRO VAL LYS SEQRES 6 A 564 ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP ALA GLY SEQRES 7 A 564 GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU ALA ASN SEQRES 8 A 564 ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA ARG ILE SEQRES 9 A 564 ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU ALA ARG SEQRES 10 A 564 GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS LYS LEU SEQRES 11 A 564 LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER ARG ARG SEQRES 12 A 564 TYR TYR PRO SER GLY GLU VAL THR ALA HIS LEU ILE GLY SEQRES 13 A 564 PHE THR ASN VAL ASP SER GLN GLY ILE GLU GLY VAL GLU SEQRES 14 A 564 LYS SER PHE ASP LYS TRP LEU THR GLY GLN PRO GLY GLU SEQRES 15 A 564 ARG ILE VAL ARG LYS ASP ARG TYR GLY ARG VAL ILE GLU SEQRES 16 A 564 ASP ILE SER SER THR ASP SER GLN ALA ALA HIS ASN LEU SEQRES 17 A 564 ALA LEU SER ILE ASP GLU ARG LEU GLN ALA LEU VAL TYR SEQRES 18 A 564 ARG GLU LEU ASN ASN ALA VAL ALA PHE ASN LYS ALA GLU SEQRES 19 A 564 SER GLY SER ALA VAL LEU VAL ASP VAL ASN THR GLY GLU SEQRES 20 A 564 VAL LEU ALA MET ALA ASN SER PRO SER TYR ASN PRO ASN SEQRES 21 A 564 ASN LEU SER GLY THR PRO LYS GLU ALA MET ARG ASN ARG SEQRES 22 A 564 THR ILE THR ASP VAL PHE GLU PRO GLY SER THR VAL LYS SEQRES 23 A 564 PRO MET VAL VAL MET THR ALA LEU GLN ARG GLY VAL VAL SEQRES 24 A 564 ARG GLU ASN SER VAL LEU ASN THR ILE PRO TYR ARG ILE SEQRES 25 A 564 ASN GLY HIS GLU ILE LYS ASP VAL ALA ARG TYR SER GLU SEQRES 26 A 564 LEU THR LEU THR GLY VAL LEU GLN LYS SER SER ASN VAL SEQRES 27 A 564 GLY VAL SER LYS LEU ALA LEU ALA MET PRO SER SER ALA SEQRES 28 A 564 LEU VAL ASP THR TYR SER ARG PHE GLY LEU GLY LYS ALA SEQRES 29 A 564 THR ASN LEU GLY LEU VAL GLY GLU ARG SER GLY LEU TYR SEQRES 30 A 564 PRO GLN LYS GLN ARG TRP SER ASP ILE GLU ARG ALA THR SEQRES 31 A 564 PHE SER PHE GLY TYR GLY LEU MET VAL THR PRO LEU GLN SEQRES 32 A 564 LEU ALA ARG VAL TYR ALA THR ILE GLY SER TYR GLY ILE SEQRES 33 A 564 TYR ARG PRO LEU SER ILE THR LYS VAL ASP PRO PRO VAL SEQRES 34 A 564 PRO GLY GLU ARG VAL PHE PRO GLU SER ILE VAL ARG THR SEQRES 35 A 564 VAL VAL HIS MET MET GLU SER VAL ALA LEU PRO GLY GLY SEQRES 36 A 564 GLY GLY VAL LYS ALA ALA ILE LYS GLY TYR ARG ILE ALA SEQRES 37 A 564 ILE LYS THR GLY THR ALA LYS LYS VAL GLY PRO ASP GLY SEQRES 38 A 564 ARG TYR ILE ASN LYS TYR ILE ALA TYR THR ALA GLY VAL SEQRES 39 A 564 ALA PRO ALA SER GLN PRO ARG PHE ALA LEU VAL VAL VAL SEQRES 40 A 564 ILE ASN ASP PRO GLN ALA GLY LYS TYR TYR GLY GLY ALA SEQRES 41 A 564 VAL SER ALA PRO VAL PHE GLY ALA ILE MET GLY GLY VAL SEQRES 42 A 564 LEU ARG THR MET ASN ILE GLU PRO ASP ALA LEU THR THR SEQRES 43 A 564 GLY ASP LYS ASN GLU PHE VAL ILE ASN GLN GLY GLU GLY SEQRES 44 A 564 THR GLY GLY ARG SER HET VL5 A 601 45 HET PO4 A 602 5 HET PO4 A 603 5 HET MPD A 604 8 HET MPD A 605 8 HETNAM VL5 (2S)-2-[(Z)-[1-(2-AZANYL-1,3-THIAZOL-4-YL)-2-[[(2S)-3- HETNAM 2 VL5 METHYL-1-OXIDANYLIDENE-3-(SULFOOXYAMINO)BUTAN-2- HETNAM 3 VL5 YL]AMINO]-2-OXIDANYLIDENE-ETHYLIDENE]AMINO]OXY-3-[4- HETNAM 4 VL5 [N-[(3R)-PIPERIDIN-3- HETNAM 5 VL5 YL]CARBAMIMIDOYL]PHENOXY]PROPANOIC ACID HETNAM PO4 PHOSPHATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN VL5 AIC499 (BOUND) FORMUL 2 VL5 C25 H34 N8 O10 S2 FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 MPD 2(C6 H14 O2) FORMUL 7 HOH *6(H2 O) HELIX 1 AA1 ASP A 94 ALA A 101 1 8 HELIX 2 AA2 ARG A 109 LEU A 117 1 9 HELIX 3 AA3 PRO A 120 ASN A 129 1 10 HELIX 4 AA4 ASN A 144 LEU A 154 1 11 HELIX 5 AA5 SER A 171 VAL A 174 5 4 HELIX 6 AA6 THR A 175 GLY A 180 1 6 HELIX 7 AA7 GLY A 191 PHE A 196 1 6 HELIX 8 AA8 PHE A 196 THR A 201 1 6 HELIX 9 AA9 ASP A 237 ASN A 255 1 19 HELIX 10 AB1 PRO A 290 MET A 294 5 5 HELIX 11 AB2 ASN A 296 ASP A 301 1 6 HELIX 12 AB3 PRO A 305 THR A 308 5 4 HELIX 13 AB4 VAL A 309 ARG A 320 1 12 HELIX 14 AB5 LEU A 352 SER A 359 1 8 HELIX 15 AB6 SER A 360 ALA A 370 1 11 HELIX 16 AB7 SER A 373 PHE A 383 1 11 HELIX 17 AB8 SER A 408 PHE A 415 1 8 HELIX 18 AB9 SER A 416 GLY A 418 5 3 HELIX 19 AC1 THR A 424 SER A 437 1 14 HELIX 20 AC2 PRO A 460 GLU A 472 1 13 HELIX 21 AC3 SER A 473 LEU A 476 5 4 HELIX 22 AC4 GLY A 481 ALA A 485 5 5 HELIX 23 AC5 SER A 546 MET A 561 1 16 SHEET 1 AA1 3 ILE A 137 TYR A 138 0 SHEET 2 AA1 3 PRO A 81 ALA A 93 -1 N ALA A 93 O ILE A 137 SHEET 3 AA1 3 ILE A 159 TYR A 168 -1 O HIS A 160 N TRP A 92 SHEET 1 AA2 4 ILE A 137 TYR A 138 0 SHEET 2 AA2 4 PRO A 81 ALA A 93 -1 N ALA A 93 O ILE A 137 SHEET 3 AA2 4 ILE A 74 THR A 75 -1 N ILE A 74 O LEU A 82 SHEET 4 AA2 4 LEU A 232 ALA A 233 1 O LEU A 232 N THR A 75 SHEET 1 AA3 2 PHE A 181 THR A 182 0 SHEET 2 AA3 2 GLY A 188 GLU A 190 -1 O ILE A 189 N PHE A 181 SHEET 1 AA4 5 VAL A 272 SER A 278 0 SHEET 2 AA4 5 SER A 259 ASP A 266 -1 N GLY A 260 O SER A 278 SHEET 3 AA4 5 PHE A 526 ASN A 533 -1 O VAL A 531 N SER A 261 SHEET 4 AA4 5 TYR A 507 ALA A 519 -1 N THR A 515 O VAL A 530 SHEET 5 AA4 5 ALA A 492 VAL A 501 -1 N ALA A 492 O VAL A 518 SHEET 1 AA5 2 VAL A 328 ASN A 330 0 SHEET 2 AA5 2 GLU A 349 THR A 351 -1 O LEU A 350 N LEU A 329 SHEET 1 AA6 2 TYR A 334 ILE A 336 0 SHEET 2 AA6 2 HIS A 339 ILE A 341 -1 O ILE A 341 N TYR A 334 LINK OG SER A 307 C39 VL5 A 601 1555 1555 1.46 CISPEP 1 SER A 278 PRO A 279 0 -0.03 CISPEP 2 PRO A 451 PRO A 452 0 -1.88 CISPEP 3 ALA A 519 PRO A 520 0 -2.92 CRYST1 106.904 106.904 285.830 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009354 0.005401 0.000000 0.00000 SCALE2 0.000000 0.010801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003499 0.00000