HEADER LIGASE 11-MAR-21 7NU7 TITLE CRYSTAL STRUCTURE OF NEISSERIA GONORRHOEAE LEURS IN COMPLEX WITH ATP TITLE 2 IN CONFORMATION 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEUCYL-TRNA SYNTHETASE; COMPND 5 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 STRAIN: NCCP11945; SOURCE 5 GENE: LEUS, NGK_0009; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS PROTEIN-LIGAND COMPLEX, ROSSMANN FOLD, TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PANG,S.V.STRELKOV,S.D.WEEKS REVDAT 3 31-JAN-24 7NU7 1 REMARK REVDAT 2 14-SEP-22 7NU7 1 JRNL REVDAT 1 31-AUG-22 7NU7 0 JRNL AUTH L.PANG,V.ZANKI,S.V.STRELKOV,A.VAN AERSCHOT,I.GRUIC-SOVULJ, JRNL AUTH 2 S.D.WEEKS JRNL TITL PARTITIONING OF THE INITIAL CATALYTIC STEPS OF LEUCYL-TRNA JRNL TITL 2 SYNTHETASE IS DRIVEN BY AN ACTIVE SITE PEPTIDE-PLANE FLIP. JRNL REF COMMUN BIOL V. 5 883 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 36038645 JRNL DOI 10.1038/S42003-022-03825-8 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 41815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0400 - 5.5600 0.99 3064 144 0.1958 0.2482 REMARK 3 2 5.5600 - 4.4200 1.00 2914 154 0.1747 0.2254 REMARK 3 3 4.4200 - 3.8600 1.00 2874 159 0.1760 0.2432 REMARK 3 4 3.8600 - 3.5100 1.00 2846 154 0.1965 0.2506 REMARK 3 5 3.5100 - 3.2600 0.98 2799 139 0.2191 0.2583 REMARK 3 6 3.2600 - 3.0600 1.00 2828 135 0.2311 0.2982 REMARK 3 7 3.0600 - 2.9100 0.99 2813 148 0.2392 0.3451 REMARK 3 8 2.9100 - 2.7800 1.00 2830 127 0.2396 0.3221 REMARK 3 9 2.7800 - 2.6800 1.00 2812 138 0.2294 0.2820 REMARK 3 10 2.6800 - 2.5800 1.00 2799 136 0.2249 0.2719 REMARK 3 11 2.5800 - 2.5000 1.00 2842 145 0.2287 0.3083 REMARK 3 12 2.5000 - 2.4300 1.00 2768 144 0.2369 0.2935 REMARK 3 13 2.4300 - 2.3700 1.00 2830 125 0.2524 0.2787 REMARK 3 14 2.3700 - 2.3100 1.00 2806 142 0.2709 0.3277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 584 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8904 13.3854 -29.6625 REMARK 3 T TENSOR REMARK 3 T11: 0.2778 T22: 0.3353 REMARK 3 T33: 0.3331 T12: -0.0686 REMARK 3 T13: -0.0585 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.3019 L22: 0.8622 REMARK 3 L33: 1.4849 L12: -0.5671 REMARK 3 L13: 0.3984 L23: 0.2780 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.1217 S13: -0.0206 REMARK 3 S21: -0.1104 S22: 0.0121 S23: -0.0180 REMARK 3 S31: -0.0412 S32: 0.0253 S33: -0.0643 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 585 THROUGH 875 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9564 -16.3983 -50.7869 REMARK 3 T TENSOR REMARK 3 T11: 0.4132 T22: 0.3780 REMARK 3 T33: 0.4619 T12: -0.0372 REMARK 3 T13: -0.0869 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.2806 L22: 1.4290 REMARK 3 L33: 2.1108 L12: -0.6183 REMARK 3 L13: 1.0908 L23: 0.2946 REMARK 3 S TENSOR REMARK 3 S11: 0.1054 S12: -0.0349 S13: 0.0958 REMARK 3 S21: 0.1729 S22: -0.0087 S23: 0.1531 REMARK 3 S31: 0.0363 S32: -0.2737 S33: -0.1307 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7174 1.4039 -30.3134 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.3688 REMARK 3 T33: 0.3645 T12: -0.0063 REMARK 3 T13: -0.1029 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.9858 L22: 1.3831 REMARK 3 L33: 1.7461 L12: 0.9875 REMARK 3 L13: 0.8757 L23: 0.7806 REMARK 3 S TENSOR REMARK 3 S11: 0.2272 S12: -0.0017 S13: -0.1951 REMARK 3 S21: 0.1885 S22: -0.0573 S23: -0.1286 REMARK 3 S31: 0.2654 S32: 0.0918 S33: -0.1488 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9703 33.5194 -11.6117 REMARK 3 T TENSOR REMARK 3 T11: 0.5173 T22: 0.4035 REMARK 3 T33: 0.4274 T12: 0.0726 REMARK 3 T13: -0.1473 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 4.6560 L22: 2.5526 REMARK 3 L33: 7.7810 L12: -0.1028 REMARK 3 L13: 1.0798 L23: -1.9248 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: -0.4549 S13: -0.2771 REMARK 3 S21: 0.1549 S22: -0.0035 S23: -0.1745 REMARK 3 S31: -0.3735 S32: -0.4509 S33: 0.1511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292110428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45696 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 82.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 1.04600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q89 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOLO PROTEIN AT 10 MG/ML IN 10 MM TRIS REMARK 280 PH 7, 100 MM NACL, 2.5 MM 2-MERCAPTOETHANOL WAS INCUBATED WITH REMARK 280 10 MM ATP ON ICE FOR HALF AN HOUR. THE PREMIXTURE WAS FURTHER REMARK 280 MIXED WITH 0.1 M BIS-TRIS PROPANE PH 8.5, 0.1 M MGCL2, 20% (W/V) REMARK 280 PEG 3350 AND A CRYSTAL SEED STOCK IN A 0.75:1.0:0.25 (V/V) REMARK 280 RATIO. THE SEED STOCK WAS PREPARED IN THE SAME CRYSTALLIZATION REMARK 280 BUFFER. SUITABLE CRYSTALS WERE CRYO-PROTECTED IN AN EQUILVALENT REMARK 280 PRECIPITANT SOLUTION SUPPLEMENTED WITH 22% V/V ETHYLENE GLYCOL., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.57050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.23400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.36400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.23400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.57050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.36400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ARG A 590 REMARK 465 GLU A 591 REMARK 465 ASN A 592 REMARK 465 ASP A 593 REMARK 465 LYS A 594 REMARK 465 GLY A 595 REMARK 465 GLY A 596 REMARK 465 LYS A 597 REMARK 465 ASP A 598 REMARK 465 TRP A 599 REMARK 465 THR A 608 REMARK 465 PHE A 609 REMARK 465 ASP A 610 REMARK 465 ASP A 611 REMARK 465 LYS A 612 REMARK 465 GLY A 613 REMARK 465 ARG A 614 REMARK 465 PRO A 615 REMARK 465 VAL A 616 REMARK 465 SER A 617 REMARK 465 ALA A 618 REMARK 465 VAL A 619 REMARK 465 LEU A 620 REMARK 465 LYS A 621 REMARK 465 ALA A 622 REMARK 465 ASP A 623 REMARK 465 GLY A 624 REMARK 465 LEU A 625 REMARK 465 PRO A 626 REMARK 465 VAL A 627 REMARK 465 VAL A 628 REMARK 465 ILE A 629 REMARK 465 SER A 630 REMARK 465 GLY A 631 REMARK 465 VAL A 876 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 129 CD CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 GLU A 145 CD OE1 OE2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 GLN A 170 CD OE1 NE2 REMARK 470 ILE A 172 CG1 CG2 CD1 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 177 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 177 CZ3 CH2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CD CE NZ REMARK 470 GLU A 214 CD OE1 OE2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LEU A 287 CD1 CD2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 SER A 298 OG REMARK 470 VAL A 299 CG1 CG2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ASP A 303 CG OD1 OD2 REMARK 470 MET A 304 CG SD CE REMARK 470 THR A 306 OG1 CG2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 TYR A 339 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 365 CE NZ REMARK 470 LYS A 366 CD CE NZ REMARK 470 VAL A 371 CG1 CG2 REMARK 470 ASP A 373 OD1 OD2 REMARK 470 ASP A 377 CG OD1 OD2 REMARK 470 ASN A 379 CG OD1 ND2 REMARK 470 ARG A 380 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 MET A 475 CG SD CE REMARK 470 LYS A 498 CD CE NZ REMARK 470 LYS A 521 CD CE NZ REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 LYS A 533 CD CE NZ REMARK 470 GLU A 546 CD OE1 OE2 REMARK 470 GLU A 575 CD OE1 OE2 REMARK 470 TYR A 589 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 600 CG1 CG2 CD1 REMARK 470 GLU A 606 CG CD OE1 OE2 REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 LYS A 639 CG CD CE NZ REMARK 470 ASN A 640 CG OD1 ND2 REMARK 470 ASN A 641 CG OD1 ND2 REMARK 470 GLN A 698 CD OE1 NE2 REMARK 470 LYS A 703 CE NZ REMARK 470 LYS A 714 CD CE NZ REMARK 470 LYS A 756 CD CE NZ REMARK 470 GLU A 762 CD OE1 OE2 REMARK 470 VAL A 813 CG1 CG2 REMARK 470 GLU A 818 CG CD OE1 OE2 REMARK 470 VAL A 823 CG1 CG2 REMARK 470 LYS A 826 CG CD CE NZ REMARK 470 ARG A 828 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 830 CG CD CE NZ REMARK 470 ASP A 836 CG OD1 OD2 REMARK 470 LYS A 839 CG CD CE NZ REMARK 470 GLU A 850 CG CD OE1 OE2 REMARK 470 VAL A 853 CG1 CG2 REMARK 470 LYS A 854 CG CD CE NZ REMARK 470 GLU A 857 CG CD OE1 OE2 REMARK 470 LYS A 859 CG CD CE NZ REMARK 470 LYS A 862 CG CD CE NZ REMARK 470 LYS A 863 CG CD CE NZ REMARK 470 ILE A 874 CG1 CG2 CD1 REMARK 470 VAL A 875 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 132 -60.48 -100.97 REMARK 500 SER A 179 -43.89 -137.90 REMARK 500 HIS A 350 19.31 -141.51 REMARK 500 VAL A 371 65.10 -114.07 REMARK 500 SER A 519 71.89 -155.84 REMARK 500 ILE A 549 -88.12 -107.51 REMARK 500 ARG A 870 -63.10 -145.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1258 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1259 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A1260 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A1261 DISTANCE = 7.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 449 SG REMARK 620 2 CYS A 452 SG 113.0 REMARK 620 3 CYS A 490 SG 108.9 105.1 REMARK 620 4 CYS A 493 SG 104.6 116.3 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1197 O REMARK 620 2 HOH A1243 O 88.3 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NTY RELATED DB: PDB REMARK 900 RELATED ID: 7NU0 RELATED DB: PDB REMARK 900 RELATED ID: 7NU2 RELATED DB: PDB REMARK 900 RELATED ID: 7NU3 RELATED DB: PDB REMARK 900 RELATED ID: 7NU4 RELATED DB: PDB REMARK 900 RELATED ID: 7NU5 RELATED DB: PDB REMARK 900 RELATED ID: 7NU6 RELATED DB: PDB DBREF 7NU7 A 1 876 UNP B4RNT1 SYL_NEIG2 1 876 SEQADV 7NU7 GLY A 0 UNP B4RNT1 EXPRESSION TAG SEQADV 7NU7 ASN A 454 UNP B4RNT1 ASP 454 CONFLICT SEQADV 7NU7 ILE A 508 UNP B4RNT1 MET 508 CONFLICT SEQRES 1 A 877 GLY MET GLN GLU HIS TYR GLN PRO ALA ALA ILE GLU PRO SEQRES 2 A 877 ALA ALA GLN LYS LYS TRP ASP ASP ALA ARG ILE SER ASN SEQRES 3 A 877 VAL SER GLU ASP ALA SER LYS PRO LYS TYR TYR CYS LEU SEQRES 4 A 877 SER MET PHE PRO TYR PRO SER GLY LYS LEU HIS MET GLY SEQRES 5 A 877 HIS VAL ARG ASN TYR THR ILE GLY ASP VAL LEU SER ARG SEQRES 6 A 877 PHE LYS LEU LEU ASN GLY PHE ASN VAL MET GLN PRO MET SEQRES 7 A 877 GLY TRP ASP ALA PHE GLY MET PRO ALA GLU ASN ALA ALA SEQRES 8 A 877 MET LYS ASN ASN VAL ALA PRO ALA ALA TRP THR TYR ASP SEQRES 9 A 877 ASN ILE GLU TYR MET LYS THR GLN LEU LYS SER LEU GLY SEQRES 10 A 877 PHE ALA VAL ASP TRP GLU ARG GLU VAL ALA THR CYS LYS SEQRES 11 A 877 PRO GLU TYR TYR ARG TRP GLU GLN TRP LEU PHE THR LYS SEQRES 12 A 877 LEU PHE GLU LYS GLY ILE VAL TYR ARG LYS ASN GLY THR SEQRES 13 A 877 VAL ASN TRP ASP PRO VAL ASP GLN THR VAL LEU ALA ASN SEQRES 14 A 877 GLU GLN VAL ILE ASP GLY ARG GLY TRP ARG SER GLY ALA SEQRES 15 A 877 LEU ILE GLU LYS ARG GLU ILE PRO MET TYR TYR PHE LYS SEQRES 16 A 877 ILE THR ASP TYR ALA GLU GLU LEU LEU ASN ASP LEU ASP SEQRES 17 A 877 LYS LEU GLU HIS TRP PRO GLU GLN VAL LYS THR MET GLN SEQRES 18 A 877 ARG ASN TRP ILE GLY LYS SER ARG GLY MET THR VAL ARG SEQRES 19 A 877 PHE ALA VAL SER ASP ASP SER LYS GLN GLY LEU GLU GLY SEQRES 20 A 877 ASP TYR ALA LYS PHE LEU GLN VAL TYR THR THR ARG PRO SEQRES 21 A 877 ASP THR LEU MET GLY ALA THR TYR VAL ALA VAL ALA ALA SEQRES 22 A 877 GLU HIS PRO LEU ALA THR ALA ALA ALA ALA ASP LYS PRO SEQRES 23 A 877 GLU LEU GLN ALA PHE ILE ALA GLU CYS LYS ALA GLY SER SEQRES 24 A 877 VAL ALA GLU ALA ASP MET ALA THR MET GLU LYS LYS GLY SEQRES 25 A 877 VAL PRO THR GLY ARG TYR VAL VAL ASN PRO LEU ASN GLY SEQRES 26 A 877 ASP LYS LEU GLU VAL TRP ILE ALA ASN TYR VAL LEU TRP SEQRES 27 A 877 GLY TYR GLY ASP GLY ALA VAL MET ALA VAL PRO ALA HIS SEQRES 28 A 877 ASP GLU ARG ASP PHE GLU PHE ALA ALA LYS TYR ASN LEU SEQRES 29 A 877 PRO LYS LYS GLN VAL ILE ALA VAL GLY ASP ASN ALA PHE SEQRES 30 A 877 ASP ALA ASN ARG TRP GLN GLU TRP TYR GLY ASP LYS GLU SEQRES 31 A 877 ASN GLY VAL LEU VAL ASN SER GLY ASP LEU ASP GLY LEU SEQRES 32 A 877 ASP PHE GLN THR ALA PHE ASP ALA VAL ALA ALA LYS LEU SEQRES 33 A 877 GLN SER GLN GLY ALA GLY GLU PRO LYS THR GLN TYR ARG SEQRES 34 A 877 LEU ARG ASP TRP GLY ILE SER ARG GLN ARG TYR TRP GLY SEQRES 35 A 877 CYS PRO ILE PRO ILE VAL HIS CYS GLU LYS CYS GLY ASN SEQRES 36 A 877 VAL PRO VAL PRO ALA ASP GLN LEU PRO VAL VAL LEU PRO SEQRES 37 A 877 GLU ASN VAL VAL PRO ASP GLY MET GLY SER PRO LEU ALA SEQRES 38 A 877 LYS MET PRO GLU PHE TYR GLU THR SER CYS PRO CYS CYS SEQRES 39 A 877 GLY GLY ALA ALA LYS ARG GLU THR ASP THR MET ASP THR SEQRES 40 A 877 PHE ILE GLU SER SER TRP TYR PHE PHE ARG TYR MET SER SEQRES 41 A 877 PRO LYS PHE SER ASP GLY MET VAL SER ALA GLU SER ALA SEQRES 42 A 877 LYS TYR TRP GLY ALA VAL ASP GLN TYR ILE GLY GLY ILE SEQRES 43 A 877 GLU HIS ALA ILE LEU HIS LEU LEU TYR ALA ARG PHE PHE SEQRES 44 A 877 THR LYS LEU MET ARG ASP GLU GLY LEU VAL ASN VAL ASP SEQRES 45 A 877 GLU PRO PHE GLU ARG LEU LEU THR GLN GLY MET VAL VAL SEQRES 46 A 877 CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY GLY LYS SEQRES 47 A 877 ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR PHE ASP SEQRES 48 A 877 ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS ALA ASP SEQRES 49 A 877 GLY LEU PRO VAL VAL ILE SER GLY THR GLU LYS MET SER SEQRES 50 A 877 LYS SER LYS ASN ASN GLY VAL ASP PRO GLN GLU LEU ILE SEQRES 51 A 877 ASN ALA TYR GLY ALA ASP THR ALA ARG LEU PHE MET MET SEQRES 52 A 877 PHE ALA ALA PRO PRO GLU GLN SER LEU GLU TRP SER ASP SEQRES 53 A 877 SER GLY VAL GLU GLY ALA HIS ARG PHE LEU ARG ARG LEU SEQRES 54 A 877 TRP ARG THR VAL TYR GLU TYR LEU LYS GLN GLY GLY ALA SEQRES 55 A 877 VAL LYS ALA PHE ALA GLY ASN GLN ASP GLY LEU SER LYS SEQRES 56 A 877 GLU LEU LYS ASP LEU ARG HIS LYS LEU HIS SER THR THR SEQRES 57 A 877 ALA LYS VAL SER ASP ASP TYR GLY ARG ARG GLN GLN PHE SEQRES 58 A 877 ASN THR ALA ILE ALA ALA VAL MET GLU LEU LEU ASN GLN SEQRES 59 A 877 TYR ASP LYS THR ASP THR GLY SER GLU GLN GLY ARG ALA SEQRES 60 A 877 VAL ALA GLN GLU VAL LEU GLU ALA ALA VAL ARG LEU LEU SEQRES 61 A 877 TRP PRO ILE VAL PRO HIS ILE CYS GLU THR LEU TRP SER SEQRES 62 A 877 GLU LEU ASN GLY ALA LYS LEU TRP GLU ALA GLY TRP PRO SEQRES 63 A 877 THR VAL ASP GLU ALA ALA LEU VAL LYS SER GLU ILE GLU SEQRES 64 A 877 VAL MET VAL GLN VAL ASN GLY LYS LEU ARG GLY LYS ILE SEQRES 65 A 877 THR VAL ALA ALA ASP ALA SER LYS ALA ASP LEU GLU ALA SEQRES 66 A 877 ALA ALA LEU ALA ASN GLU GLY ALA VAL LYS PHE MET GLU SEQRES 67 A 877 GLY LYS PRO ALA LYS LYS ILE ILE VAL VAL PRO GLY ARG SEQRES 68 A 877 LEU VAL ASN ILE VAL VAL HET EDO A1001 4 HET ATP A1002 31 HET ATP A1003 31 HET ZN A1004 1 HET MG A1005 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 ZN ZN 2+ FORMUL 6 MG MG 2+ FORMUL 7 HOH *161(H2 O) HELIX 1 AA1 GLN A 6 ARG A 22 1 17 HELIX 2 AA2 HIS A 49 ASN A 69 1 21 HELIX 3 AA3 GLY A 83 ASN A 94 1 12 HELIX 4 AA4 ALA A 96 SER A 114 1 19 HELIX 5 AA5 ASP A 120 GLU A 124 5 5 HELIX 6 AA6 LYS A 129 LYS A 146 1 18 HELIX 7 AA7 ALA A 167 GLU A 169 5 3 HELIX 8 AA8 ILE A 195 ASP A 197 5 3 HELIX 9 AA9 TYR A 198 ASP A 205 1 8 HELIX 10 AB1 LEU A 206 LEU A 209 5 4 HELIX 11 AB2 PRO A 213 GLY A 225 1 13 HELIX 12 AB3 GLU A 245 ALA A 249 5 5 HELIX 13 AB4 ARG A 258 ALA A 265 5 8 HELIX 14 AB5 HIS A 274 ALA A 281 1 8 HELIX 15 AB6 LYS A 284 ALA A 296 1 13 HELIX 16 AB7 ALA A 300 MET A 307 1 8 HELIX 17 AB8 ASP A 351 ASN A 362 1 12 HELIX 18 AB9 GLN A 382 ASP A 387 5 6 HELIX 19 AC1 SER A 396 ASP A 400 5 5 HELIX 20 AC2 ASP A 403 GLN A 418 1 16 HELIX 21 AC3 PRO A 458 LEU A 462 5 5 HELIX 22 AC4 SER A 477 LYS A 481 5 5 HELIX 23 AC5 MET A 482 TYR A 486 1 5 HELIX 24 AC6 ILE A 508 SER A 511 5 4 HELIX 25 AC7 TRP A 512 TYR A 517 1 6 HELIX 26 AC8 SER A 528 GLY A 536 1 9 HELIX 27 AC9 GLY A 544 ALA A 548 5 5 HELIX 28 AD1 ILE A 549 GLU A 565 1 17 HELIX 29 AD2 ASN A 601 VAL A 605 5 5 HELIX 30 AD3 ASP A 644 GLY A 653 1 10 HELIX 31 AD4 GLY A 653 ALA A 665 1 13 HELIX 32 AD5 SER A 674 GLN A 698 1 25 HELIX 33 AD6 SER A 713 ARG A 736 1 24 HELIX 34 AD7 GLN A 739 LYS A 756 1 18 HELIX 35 AD8 SER A 761 LEU A 779 1 19 HELIX 36 AD9 VAL A 783 ASN A 795 1 13 HELIX 37 AE1 LYS A 798 GLY A 803 1 6 HELIX 38 AE2 ASP A 808 VAL A 813 5 6 HELIX 39 AE3 SER A 838 ALA A 848 1 11 HELIX 40 AE4 ASN A 849 MET A 856 1 8 SHEET 1 AA1 4 ASN A 72 MET A 74 0 SHEET 2 AA1 4 LYS A 34 SER A 39 1 N TYR A 35 O MET A 74 SHEET 3 AA1 4 GLN A 540 ILE A 542 1 O GLN A 540 N LEU A 38 SHEET 4 AA1 4 LEU A 577 LEU A 578 1 O LEU A 578 N TYR A 541 SHEET 1 AA2 2 GLY A 78 TRP A 79 0 SHEET 2 AA2 2 VAL A 125 ALA A 126 1 O VAL A 125 N TRP A 79 SHEET 1 AA3 4 THR A 164 LEU A 166 0 SHEET 2 AA3 4 VAL A 149 ASP A 159 -1 N ASN A 157 O LEU A 166 SHEET 3 AA3 4 GLU A 184 PHE A 193 -1 O GLU A 184 N TRP A 158 SHEET 4 AA3 4 TRP A 432 GLY A 433 -1 O TRP A 432 N PHE A 193 SHEET 1 AA4 2 VAL A 171 ILE A 172 0 SHEET 2 AA4 2 ARG A 175 GLY A 176 -1 O ARG A 175 N ILE A 172 SHEET 1 AA5 6 PHE A 251 THR A 256 0 SHEET 2 AA5 6 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA5 6 GLY A 311 VAL A 319 -1 O VAL A 319 N ALA A 235 SHEET 4 AA5 6 LYS A 326 ALA A 332 -1 O LEU A 327 N VAL A 318 SHEET 5 AA5 6 TYR A 267 VAL A 270 1 N VAL A 270 O TRP A 330 SHEET 6 AA5 6 ALA A 343 ALA A 346 -1 O VAL A 344 N ALA A 269 SHEET 1 AA6 3 PHE A 251 THR A 256 0 SHEET 2 AA6 3 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA6 3 GLY A 421 TYR A 427 -1 O GLN A 426 N SER A 227 SHEET 1 AA7 2 ILE A 369 ALA A 370 0 SHEET 2 AA7 2 VAL A 392 LEU A 393 -1 O VAL A 392 N ALA A 370 SHEET 1 AA8 2 SER A 435 ARG A 436 0 SHEET 2 AA8 2 THR A 503 MET A 504 -1 O THR A 503 N ARG A 436 SHEET 1 AA9 4 GLY A 453 PRO A 456 0 SHEET 2 AA9 4 ILE A 446 CYS A 449 -1 N VAL A 447 O VAL A 455 SHEET 3 AA9 4 ALA A 496 ARG A 499 -1 O LYS A 498 N HIS A 448 SHEET 4 AA9 4 GLU A 487 SER A 489 -1 N THR A 488 O ALA A 497 SHEET 1 AB1 3 GLU A 633 LYS A 634 0 SHEET 2 AB1 3 VAL A 583 CYS A 585 -1 N CYS A 585 O GLU A 633 SHEET 3 AB1 3 LEU A 671 GLU A 672 1 O LEU A 671 N VAL A 584 SHEET 1 AB2 4 LYS A 826 VAL A 833 0 SHEET 2 AB2 4 ILE A 817 VAL A 823 -1 N ILE A 817 O VAL A 833 SHEET 3 AB2 4 LEU A 871 ILE A 874 1 O VAL A 872 N GLN A 822 SHEET 4 AB2 4 ILE A 864 VAL A 867 -1 N VAL A 867 O LEU A 871 LINK SG CYS A 449 ZN ZN A1004 1555 1555 2.35 LINK SG CYS A 452 ZN ZN A1004 1555 1555 2.32 LINK SG CYS A 490 ZN ZN A1004 1555 1555 2.37 LINK SG CYS A 493 ZN ZN A1004 1555 1555 2.39 LINK MG MG A1005 O HOH A1197 1555 1555 2.16 LINK MG MG A1005 O HOH A1243 1555 1555 2.18 CISPEP 1 LEU A 462 PRO A 463 0 3.69 CRYST1 49.141 82.728 228.468 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004377 0.00000