HEADER HYDROLASE 13-MAY-20 6WYP TITLE CRYSTAL STRUCTURE OF DANIO RERIO HISTONE DEACETYLASE 6 CATALYTIC TITLE 2 DOMAIN 1 (CD1) K330L MUTANT COMPLEXED WITH SAHA-BPYNE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 6; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE DEACETYLASE, HYDROLASE, METALLOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.OSKO,D.W.CHRISTIANSON REVDAT 3 18-OCT-23 6WYP 1 REMARK REVDAT 2 16-SEP-20 6WYP 1 JRNL REVDAT 1 02-SEP-20 6WYP 0 JRNL AUTH J.D.OSKO,D.W.CHRISTIANSON JRNL TITL BINDING OF INHIBITORS TO ACTIVE-SITE MUTANTS OF CD1, THE JRNL TITL 2 ENIGMATIC CATALYTIC DOMAIN OF HISTONE DEACETYLASE 6. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 76 428 2020 JRNL REFN ESSN 2053-230X JRNL PMID 32880591 JRNL DOI 10.1107/S2053230X20010250 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.338 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.827 REMARK 3 FREE R VALUE TEST SET COUNT : 729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.2500 - 4.1036 1.00 2984 154 0.1636 0.1771 REMARK 3 2 4.1036 - 3.2572 1.00 2872 139 0.2055 0.2678 REMARK 3 3 3.2572 - 2.8455 1.00 2856 161 0.2431 0.3289 REMARK 3 4 2.8455 - 2.5854 1.00 2844 129 0.2631 0.3185 REMARK 3 5 2.5854 - 2.4001 1.00 2818 146 0.2552 0.2822 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.249 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2826 REMARK 3 ANGLE : 0.579 3844 REMARK 3 CHIRALITY : 0.042 425 REMARK 3 PLANARITY : 0.003 499 REMARK 3 DIHEDRAL : 15.036 1641 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15104 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 54.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 5EEF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML HDAC6 PROTEIN 0.2 M POTASSIUM REMARK 280 SODIUM TARTRATE TETRAHYDRATE 20% PEG 3350 1:1 RATIO PROTEIN TO REMARK 280 PRECIPITANT SOLUTION, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.85500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.85500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.01450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.01450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.85500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.01450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.58500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.85500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.01450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.58500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 40 REMARK 465 GLY A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 HIS A 44 REMARK 465 HIS A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 SER A 50 REMARK 465 SER A 51 REMARK 465 GLY A 52 REMARK 465 LEU A 53 REMARK 465 VAL A 54 REMARK 465 PRO A 55 REMARK 465 ARG A 56 REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 465 HIS A 59 REMARK 465 PHE A 418 REMARK 465 GLU A 419 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 60 CG SD CE REMARK 470 GLN A 107 CD OE1 NE2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 LYS A 124 CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 SER A 132 OG REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 222 CD OE1 NE2 REMARK 470 GLU A 242 CD OE1 OE2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 SER A 389 OG REMARK 470 SER A 390 OG REMARK 470 GLU A 395 CD OE1 OE2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LYS A 403 CD CE NZ REMARK 470 TYR A 409 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 SER A 414 OG REMARK 470 GLN A 416 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 150 66.34 60.15 REMARK 500 PRO A 190 -179.46 -66.16 REMARK 500 TYR A 255 -52.44 -135.99 REMARK 500 ASP A 257 13.99 58.24 REMARK 500 LEU A 303 -63.02 -127.24 REMARK 500 GLU A 360 -102.40 -116.41 REMARK 500 GLN A 416 85.46 -69.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 228 O REMARK 620 2 ASP A 228 OD1 71.6 REMARK 620 3 ASP A 230 O 97.7 96.6 REMARK 620 4 HIS A 232 O 158.6 87.0 84.4 REMARK 620 5 SER A 251 OG 90.3 110.5 152.9 97.5 REMARK 620 6 VAL A 252 O 75.8 139.1 63.9 123.2 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 230 OD1 REMARK 620 2 HIS A 232 ND1 99.2 REMARK 620 3 ASP A 323 OD2 83.7 88.7 REMARK 620 4 UFS A 504 O01 163.7 94.3 105.7 REMARK 620 5 UFS A 504 O01 164.1 94.3 104.9 0.8 REMARK 620 6 UFS A 504 O35 87.1 125.5 145.6 77.7 78.3 REMARK 620 7 UFS A 504 O35 87.0 126.5 144.6 77.7 78.3 1.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 503 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 241 O REMARK 620 2 ASP A 244 O 84.2 REMARK 620 3 VAL A 247 O 119.4 80.3 REMARK 620 4 TYR A 280 O 143.1 125.1 90.0 REMARK 620 5 HOH A 602 O 63.9 148.0 113.4 85.0 REMARK 620 6 HOH A 607 O 76.7 97.3 163.1 77.6 77.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UFS A 504 DBREF 6WYP A 61 419 UNP F8W4B7 F8W4B7_DANRE 61 419 SEQADV 6WYP MET A 40 UNP F8W4B7 INITIATING METHIONINE SEQADV 6WYP GLY A 41 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP SER A 42 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP SER A 43 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP HIS A 44 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP HIS A 45 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP HIS A 46 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP HIS A 47 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP HIS A 48 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP HIS A 49 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP SER A 50 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP SER A 51 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP GLY A 52 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP LEU A 53 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP VAL A 54 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP PRO A 55 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP ARG A 56 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP GLY A 57 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP SER A 58 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP HIS A 59 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP MET A 60 UNP F8W4B7 EXPRESSION TAG SEQADV 6WYP LEU A 330 UNP F8W4B7 LYS 330 ENGINEERED MUTATION SEQRES 1 A 380 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 380 LEU VAL PRO ARG GLY SER HIS MET THR GLY THR GLY LEU SEQRES 3 A 380 VAL TYR VAL ASP ALA PHE THR ARG PHE HIS CYS LEU TRP SEQRES 4 A 380 ASP ALA SER HIS PRO GLU CYS PRO ALA ARG VAL SER THR SEQRES 5 A 380 VAL MET GLU MET LEU GLU THR GLU GLY LEU LEU GLY ARG SEQRES 6 A 380 CYS VAL GLN VAL GLU ALA ARG ALA VAL THR GLU ASP GLU SEQRES 7 A 380 LEU LEU LEU VAL HIS THR LYS GLU TYR VAL GLU LEU MET SEQRES 8 A 380 LYS SER THR GLN ASN MET THR GLU GLU GLU LEU LYS THR SEQRES 9 A 380 LEU ALA GLU LYS TYR ASP SER VAL TYR LEU HIS PRO GLY SEQRES 10 A 380 PHE PHE SER SER ALA CYS LEU SER VAL GLY SER VAL LEU SEQRES 11 A 380 GLN LEU VAL ASP LYS VAL MET THR SER GLN LEU ARG ASN SEQRES 12 A 380 GLY PHE SER ILE ASN ARG PRO PRO GLY HIS HIS ALA GLN SEQRES 13 A 380 ALA ASP LYS MET ASN GLY PHE CYS MET PHE ASN ASN LEU SEQRES 14 A 380 ALA ILE ALA ALA ARG TYR ALA GLN LYS ARG HIS ARG VAL SEQRES 15 A 380 GLN ARG VAL LEU ILE VAL ASP TRP ASP VAL HIS HIS GLY SEQRES 16 A 380 GLN GLY ILE GLN TYR ILE PHE GLU GLU ASP PRO SER VAL SEQRES 17 A 380 LEU TYR PHE SER VAL HIS ARG TYR GLU ASP GLY SER PHE SEQRES 18 A 380 TRP PRO HIS LEU LYS GLU SER ASP SER SER SER VAL GLY SEQRES 19 A 380 SER GLY ALA GLY GLN GLY TYR ASN ILE ASN LEU PRO TRP SEQRES 20 A 380 ASN LYS VAL GLY MET GLU SER GLY ASP TYR ILE THR ALA SEQRES 21 A 380 PHE GLN GLN LEU LEU LEU PRO VAL ALA TYR GLU PHE GLN SEQRES 22 A 380 PRO GLN LEU VAL LEU VAL ALA ALA GLY PHE ASP ALA VAL SEQRES 23 A 380 ILE GLY ASP PRO LEU GLY GLY MET GLN VAL SER PRO GLU SEQRES 24 A 380 CYS PHE SER ILE LEU THR HIS MET LEU LYS GLY VAL ALA SEQRES 25 A 380 GLN GLY ARG LEU VAL LEU ALA LEU GLU GLY GLY TYR ASN SEQRES 26 A 380 LEU GLN SER THR ALA GLU GLY VAL CYS ALA SER MET ARG SEQRES 27 A 380 SER LEU LEU GLY ASP PRO CYS PRO HIS LEU PRO SER SER SEQRES 28 A 380 GLY ALA PRO CYS GLU SER ALA LEU LYS SER ILE SER LYS SEQRES 29 A 380 THR ILE SER ASP LEU TYR PRO PHE TRP LYS SER LEU GLN SEQRES 30 A 380 THR PHE GLU HET ZN A 501 1 HET K A 502 1 HET K A 503 1 HET UFS A 504 70 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM UFS N~1~-(4-{4-[(HEX-5-YNOYL)AMINO]BENZENE-1- HETNAM 2 UFS CARBONYL}PHENYL)-N~8~-HYDROXYOCTANEDIAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 K 2(K 1+) FORMUL 5 UFS C27 H31 N3 O5 FORMUL 6 HOH *47(H2 O) HELIX 1 AA1 VAL A 68 ARG A 73 5 6 HELIX 2 AA2 PRO A 86 GLU A 99 1 14 HELIX 3 AA3 LEU A 101 CYS A 105 5 5 HELIX 4 AA4 THR A 114 LEU A 119 1 6 HELIX 5 AA5 THR A 123 SER A 132 1 10 HELIX 6 AA6 THR A 137 GLU A 146 1 10 HELIX 7 AA7 GLY A 156 THR A 177 1 22 HELIX 8 AA8 ASN A 206 HIS A 219 1 14 HELIX 9 AA9 GLY A 234 PHE A 241 1 8 HELIX 10 AB1 GLU A 256 SER A 259 5 4 HELIX 11 AB2 LEU A 264 ASP A 268 5 5 HELIX 12 AB3 SER A 274 GLN A 278 5 5 HELIX 13 AB4 GLU A 292 LEU A 303 1 12 HELIX 14 AB5 LEU A 303 GLN A 312 1 10 HELIX 15 AB6 GLU A 338 GLY A 349 1 12 HELIX 16 AB7 VAL A 350 GLY A 353 5 4 HELIX 17 AB8 ASN A 364 LEU A 380 1 17 HELIX 18 AB9 CYS A 394 TYR A 409 1 16 HELIX 19 AC1 PRO A 410 GLN A 416 5 7 SHEET 1 AA1 8 VAL A 106 GLN A 107 0 SHEET 2 AA1 8 THR A 63 VAL A 66 1 N THR A 63 O VAL A 106 SHEET 3 AA1 8 ASN A 182 SER A 185 1 O ASN A 182 N GLY A 64 SHEET 4 AA1 8 LEU A 355 LEU A 359 1 O LEU A 357 N GLY A 183 SHEET 5 AA1 8 LEU A 315 ALA A 320 1 N VAL A 318 O VAL A 356 SHEET 6 AA1 8 VAL A 224 ASP A 228 1 N LEU A 225 O LEU A 317 SHEET 7 AA1 8 VAL A 247 ARG A 254 1 O LEU A 248 N ILE A 226 SHEET 8 AA1 8 ASN A 281 TRP A 286 1 O LEU A 284 N SER A 251 LINK O ASP A 228 K K A 502 1555 1555 2.83 LINK OD1 ASP A 228 K K A 502 1555 1555 2.84 LINK OD1 ASP A 230 ZN ZN A 501 1555 1555 2.13 LINK O ASP A 230 K K A 502 1555 1555 2.66 LINK ND1 HIS A 232 ZN ZN A 501 1555 1555 2.16 LINK O HIS A 232 K K A 502 1555 1555 2.98 LINK O PHE A 241 K K A 503 1555 1555 2.68 LINK O ASP A 244 K K A 503 1555 1555 2.81 LINK O VAL A 247 K K A 503 1555 1555 2.77 LINK OG SER A 251 K K A 502 1555 1555 2.95 LINK O VAL A 252 K K A 502 1555 1555 2.74 LINK O TYR A 280 K K A 503 1555 1555 2.70 LINK OD2 ASP A 323 ZN ZN A 501 1555 1555 2.01 LINK ZN ZN A 501 O01AUFS A 504 1555 1555 2.25 LINK ZN ZN A 501 O01BUFS A 504 1555 1555 2.16 LINK ZN ZN A 501 O35AUFS A 504 1555 1555 2.07 LINK ZN ZN A 501 O35BUFS A 504 1555 1555 2.14 LINK K K A 503 O HOH A 602 1555 1555 3.07 LINK K K A 503 O HOH A 607 1555 1555 3.06 CISPEP 1 ARG A 188 PRO A 189 0 7.24 CISPEP 2 TRP A 261 PRO A 262 0 5.96 SITE 1 AC1 4 ASP A 230 HIS A 232 ASP A 323 UFS A 504 SITE 1 AC2 5 ASP A 228 ASP A 230 HIS A 232 SER A 251 SITE 2 AC2 5 VAL A 252 SITE 1 AC3 6 PHE A 241 ASP A 244 VAL A 247 TYR A 280 SITE 2 AC3 6 HOH A 602 HOH A 607 SITE 1 AC4 21 PRO A 83 SER A 150 HIS A 192 HIS A 193 SITE 2 AC4 21 GLY A 201 PHE A 202 ASP A 230 HIS A 232 SITE 3 AC4 21 GLU A 256 ASP A 257 GLY A 258 SER A 259 SITE 4 AC4 21 TRP A 261 HIS A 263 ASP A 323 PRO A 329 SITE 5 AC4 21 LEU A 330 TYR A 363 ZN A 501 HOH A 620 SITE 6 AC4 21 HOH A 623 CRYST1 66.029 95.170 119.710 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008354 0.00000