HEADER OXIDOREDUCTASE 01-OCT-19 6SYY TITLE CRYSTAL STRUCTURE OF MCOA MULTICOPPER OXIDASE FROM THE TITLE 2 HYPERTHERMOPHILE AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC CELL DIVISION PROTEIN (SUFI); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: SUFI, AQ_1130; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MULTICOPPER OXIDASE, HYPERTHERMOPHILES, MET-RICH LOOPS, LACCASES, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.T.BORGES,V.BRISSOS,T.N.CORDEIRO,L.O.MARTINS,C.FRAZAO REVDAT 3 24-JAN-24 6SYY 1 REMARK REVDAT 2 30-JUN-21 6SYY 1 REMARK REVDAT 1 17-JUN-20 6SYY 0 JRNL AUTH P.T.BORGES,V.BRISSOS,T.N.CORDEIRO,L.O.MARTINS,C.FRAZAO JRNL TITL THE METHIONINE-RICH LOOP OF MULTICOPPER OXIDASE MCOA FOLLOWS JRNL TITL 2 OPEN-TO-CLOSE TRANSITIONS WITH A ROLE IN ENZYME CATALYSIS JRNL REF ACS CATALYSIS 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.0C01623 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 3 NUMBER OF REFLECTIONS : 41629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 100.00 REMARK 3 FREE R VALUE TEST SET COUNT : 41629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6630 - 5.5705 1.00 1796 1796 0.1594 0.1594 REMARK 3 2 5.5705 - 4.4226 1.00 1712 1712 0.1085 0.1085 REMARK 3 3 4.4226 - 3.8638 1.00 1681 1681 0.1069 0.1069 REMARK 3 4 3.8638 - 3.5107 1.00 1666 1666 0.1262 0.1262 REMARK 3 5 3.5107 - 3.2591 1.00 1678 1678 0.1410 0.1410 REMARK 3 6 3.2591 - 3.0670 1.00 1645 1645 0.1577 0.1577 REMARK 3 7 3.0670 - 2.9135 1.00 1642 1642 0.1732 0.1732 REMARK 3 8 2.9135 - 2.7866 1.00 1646 1646 0.1859 0.1859 REMARK 3 9 2.7866 - 2.6794 1.00 1649 1649 0.2066 0.2066 REMARK 3 10 2.6794 - 2.5869 1.00 1649 1649 0.2234 0.2234 REMARK 3 11 2.5869 - 2.5060 1.00 1642 1642 0.2291 0.2291 REMARK 3 12 2.5060 - 2.4344 1.00 1619 1619 0.2337 0.2337 REMARK 3 13 2.4344 - 2.3703 1.00 1628 1628 0.2414 0.2414 REMARK 3 14 2.3703 - 2.3125 1.00 1641 1641 0.2476 0.2476 REMARK 3 15 2.3125 - 2.2599 1.00 1633 1633 0.2479 0.2479 REMARK 3 16 2.2599 - 2.2118 1.00 1625 1625 0.2580 0.2580 REMARK 3 17 2.2118 - 2.1676 0.99 1608 1608 0.2650 0.2650 REMARK 3 18 2.1676 - 2.1267 0.95 1543 1543 0.2838 0.2838 REMARK 3 19 2.1267 - 2.0887 0.91 1489 1489 0.2952 0.2952 REMARK 3 20 2.0887 - 2.0533 0.86 1390 1390 0.3130 0.3130 REMARK 3 21 2.0533 - 2.0202 0.82 1326 1326 0.3386 0.3386 REMARK 3 22 2.0202 - 1.9891 0.78 1240 1240 0.3493 0.3493 REMARK 3 23 1.9891 - 1.9598 0.73 1187 1187 0.3653 0.3653 REMARK 3 24 1.9598 - 1.9322 0.69 1113 1113 0.3933 0.3933 REMARK 3 25 1.9322 - 1.9061 0.62 1003 1003 0.3948 0.3948 REMARK 3 26 1.9061 - 1.8814 0.55 912 912 0.4265 0.4265 REMARK 3 27 1.8814 - 1.8579 0.47 749 749 0.4403 0.4403 REMARK 3 28 1.8579 - 1.8355 0.40 649 649 0.4431 0.4431 REMARK 3 29 1.8355 - 1.8141 0.32 517 517 0.4516 0.4516 REMARK 3 30 1.8141 - 1.7940 0.21 351 351 0.4910 0.4910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 47:125) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5861 49.2162 13.7056 REMARK 3 T TENSOR REMARK 3 T11: 0.3377 T22: 0.1874 REMARK 3 T33: 0.2101 T12: 0.0412 REMARK 3 T13: 0.0117 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.9873 L22: 0.7739 REMARK 3 L33: 1.5408 L12: 0.1944 REMARK 3 L13: -0.0733 L23: 0.6752 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.1366 S13: 0.2389 REMARK 3 S21: -0.1812 S22: 0.0073 S23: -0.0223 REMARK 3 S31: -0.3371 S32: -0.0776 S33: -0.0383 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 126:134) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7757 32.2015 7.2837 REMARK 3 T TENSOR REMARK 3 T11: 0.3607 T22: 0.2424 REMARK 3 T33: 0.1812 T12: 0.0336 REMARK 3 T13: -0.0485 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.9125 L22: 7.9057 REMARK 3 L33: 0.5030 L12: -5.5018 REMARK 3 L13: -0.4734 L23: 0.4142 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: 0.1735 S13: 0.1340 REMARK 3 S21: 0.0470 S22: -0.0819 S23: -0.0518 REMARK 3 S31: 0.2534 S32: -0.0174 S33: -0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 135:218) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0985 45.0592 19.5631 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.2113 REMARK 3 T33: 0.2037 T12: 0.0429 REMARK 3 T13: 0.0201 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.4517 L22: 0.9250 REMARK 3 L33: 1.1224 L12: -0.0917 REMARK 3 L13: 0.1320 L23: 0.1910 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: 0.0017 S13: 0.0640 REMARK 3 S21: -0.1256 S22: 0.0431 S23: -0.0246 REMARK 3 S31: -0.0746 S32: -0.0140 S33: -0.0287 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 219:238) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3400 41.1159 24.9708 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.2290 REMARK 3 T33: 0.2595 T12: 0.0041 REMARK 3 T13: -0.0712 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 5.2173 L22: 3.1634 REMARK 3 L33: 5.1275 L12: -2.7713 REMARK 3 L13: -1.4711 L23: 3.5890 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: -0.0575 S13: -0.2389 REMARK 3 S21: 0.4515 S22: 0.1123 S23: -0.3491 REMARK 3 S31: 0.2453 S32: -0.0298 S33: -0.3422 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 239:270) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6074 48.3530 36.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.2362 REMARK 3 T33: 0.1944 T12: 0.0115 REMARK 3 T13: 0.0215 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.6843 L22: 3.2689 REMARK 3 L33: 2.5706 L12: -1.2185 REMARK 3 L13: -0.7763 L23: 2.0995 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: -0.1768 S13: 0.0679 REMARK 3 S21: 0.1938 S22: 0.1471 S23: -0.1367 REMARK 3 S31: -0.0223 S32: 0.0669 S33: -0.1329 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 271:377) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5107 45.7648 39.4702 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.2206 REMARK 3 T33: 0.1729 T12: -0.0172 REMARK 3 T13: 0.0135 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.3290 L22: 1.5834 REMARK 3 L33: 1.7891 L12: 0.2341 REMARK 3 L13: 0.6002 L23: 0.5551 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: -0.0785 S13: -0.0052 REMARK 3 S21: 0.2634 S22: -0.0013 S23: -0.1000 REMARK 3 S31: -0.0385 S32: 0.1495 S33: -0.0706 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 378:384) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4686 43.1761 39.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.4669 REMARK 3 T33: 0.2993 T12: -0.0566 REMARK 3 T13: 0.1335 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 6.2595 L22: 4.0599 REMARK 3 L33: 2.0534 L12: -5.0404 REMARK 3 L13: -3.5808 L23: 2.8834 REMARK 3 S TENSOR REMARK 3 S11: 0.5401 S12: -0.8179 S13: 0.4560 REMARK 3 S21: 1.2056 S22: -0.7839 S23: 0.8185 REMARK 3 S31: 0.6471 S32: -1.4254 S33: 0.3726 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 385:403) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4377 19.4034 26.4078 REMARK 3 T TENSOR REMARK 3 T11: 0.4496 T22: 0.2008 REMARK 3 T33: 0.2248 T12: -0.0640 REMARK 3 T13: 0.0003 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 5.8340 L22: 4.6299 REMARK 3 L33: 2.4015 L12: -0.7679 REMARK 3 L13: 0.0253 L23: 0.7877 REMARK 3 S TENSOR REMARK 3 S11: -0.2152 S12: 0.0691 S13: -0.8677 REMARK 3 S21: 0.1146 S22: -0.0875 S23: 0.5576 REMARK 3 S31: 0.6448 S32: -0.1238 S33: 0.3040 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 404:422) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3602 19.8597 12.3847 REMARK 3 T TENSOR REMARK 3 T11: 0.3982 T22: 0.1728 REMARK 3 T33: 0.2850 T12: 0.0652 REMARK 3 T13: 0.0740 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 6.1675 L22: 5.6775 REMARK 3 L33: 7.5624 L12: -2.0115 REMARK 3 L13: 3.0954 L23: -2.2833 REMARK 3 S TENSOR REMARK 3 S11: 0.1918 S12: 0.3484 S13: -0.1905 REMARK 3 S21: -0.4867 S22: -0.1873 S23: -0.3168 REMARK 3 S31: 0.7793 S32: 0.4763 S33: -0.1111 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 423:525) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7519 25.6514 22.3408 REMARK 3 T TENSOR REMARK 3 T11: 0.3180 T22: 0.1792 REMARK 3 T33: 0.2163 T12: 0.0084 REMARK 3 T13: -0.0126 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.2878 L22: 1.5859 REMARK 3 L33: 1.6933 L12: -0.0588 REMARK 3 L13: -0.2530 L23: 0.0254 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: -0.0150 S13: -0.0928 REMARK 3 S21: 0.0029 S22: -0.0328 S23: 0.0192 REMARK 3 S31: 0.2452 S32: -0.0844 S33: 0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MCOA REFINEMENT CONVERGED TO RWORK AND REMARK 3 RFREE OF 0.199 AND 0.239, RESPECTIVELY USING A RFREE TEST SET REMARK 3 SIZE OF 1.44 % (599 REFLECTIONS). THE FINAL MODEL WAS REFINED REMARK 3 VERSUS THE FULL DATA, RESULTING IN R VALUE OF 0.1922. REMARK 4 REMARK 4 6SYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42821 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 46.663 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3AW5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1500, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.46000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.29450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.46350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.29450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.46350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 PHE A 6 REMARK 465 ILE A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 PHE A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 PHE A 17 REMARK 465 SER A 18 REMARK 465 VAL A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 LEU A 24 REMARK 465 LEU A 25 REMARK 465 SER A 26 REMARK 465 CYS A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLY A 31 REMARK 465 THR A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 GLN A 39 REMARK 465 GLY A 40 REMARK 465 SER A 41 REMARK 465 GLY A 42 REMARK 465 THR A 43 REMARK 465 GLY A 327 REMARK 465 MET A 328 REMARK 465 GLY A 329 REMARK 465 MET A 330 REMARK 465 ILE A 331 REMARK 465 GLY A 332 REMARK 465 MET A 333 REMARK 465 ARG A 334 REMARK 465 MET A 335 REMARK 465 GLY A 336 REMARK 465 MET A 337 REMARK 465 GLY A 338 REMARK 465 MET A 339 REMARK 465 GLU A 340 REMARK 465 ARG A 341 REMARK 465 GLY A 342 REMARK 465 MET A 343 REMARK 465 GLY A 344 REMARK 465 MET A 345 REMARK 465 GLY A 346 REMARK 465 ASN A 347 REMARK 465 GLY A 348 REMARK 465 MET A 349 REMARK 465 ASN A 350 REMARK 465 MET A 351 REMARK 465 ASP A 352 REMARK 465 MET A 353 REMARK 465 GLY A 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 997 O HOH A 1025 2.16 REMARK 500 O HOH A 883 O HOH A 889 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 198 -72.60 -102.00 REMARK 500 ALA A 258 -24.49 -152.72 REMARK 500 VAL A 279 -163.92 -128.51 REMARK 500 ASN A 313 -0.81 84.99 REMARK 500 LEU A 325 45.94 -86.51 REMARK 500 ASP A 416 51.49 -98.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 703 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 118 NE2 REMARK 620 2 HIS A 454 NE2 127.3 REMARK 620 3 O A 705 O 108.1 123.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 704 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 ND1 REMARK 620 2 HIS A 159 NE2 131.1 REMARK 620 3 HIS A 510 NE2 96.2 124.6 REMARK 620 4 O A 705 O 105.4 96.4 96.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 702 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 161 NE2 REMARK 620 2 HIS A 456 NE2 117.9 REMARK 620 3 HIS A 508 NE2 111.5 94.9 REMARK 620 4 O A 705 O 104.3 125.3 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 701 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 451 ND1 REMARK 620 2 CYS A 509 SG 130.6 REMARK 620 3 HIS A 514 ND1 102.7 119.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O A 705 DBREF 6SYY A 1 527 UNP O67206 O67206_AQUAE 1 527 SEQRES 1 A 527 MET ASP ARG ARG LYS PHE ILE LYS THR SER LEU PHE SER SEQRES 2 A 527 ALA LEU GLY PHE SER VAL GLY GLY LEU SER LEU LEU SER SEQRES 3 A 527 CYS GLY GLY GLY GLY THR THR GLY SER SER SER GLY GLN SEQRES 4 A 527 GLY SER GLY THR LEU SER LYS GLN SER LEU ASN ILE PRO SEQRES 5 A 527 GLY TYR PHE LEU PHE PRO ASP GLY GLN ARG VAL SER ILE SEQRES 6 A 527 THR ALA LYS TRP THR THR LEU GLU VAL ILE PRO GLY LYS SEQRES 7 A 527 SER THR ASP MET LEU VAL TYR GLU ILE ASP ASN GLU TYR SEQRES 8 A 527 ASN PRO VAL ILE PHE LEU ARG LYS GLY GLN THR PHE SER SEQRES 9 A 527 ALA ASP PHE VAL ASN ASN SER GLY GLU ASP SER ILE ILE SEQRES 10 A 527 HIS TRP HIS GLY PHE ARG ALA PRO TRP LYS SER ASP GLY SEQRES 11 A 527 HIS PRO TYR TYR ALA VAL LYS ASP GLY GLU THR TYR SER SEQRES 12 A 527 TYR PRO ASP PHE THR ILE ILE ASP ARG SER GLY THR TYR SEQRES 13 A 527 PHE TYR HIS PRO HIS PRO HIS GLY ARG THR GLY TYR GLN SEQRES 14 A 527 VAL TYR TYR GLY LEU ALA GLY MET ILE ILE ILE GLU ASP SEQRES 15 A 527 GLU ASP GLU ASP ASN LEU LYS GLN ALA LEU ASP LEU GLU SEQRES 16 A 527 TYR GLY VAL ILE ASP ILE PRO LEU ILE ILE GLN ASP LYS SEQRES 17 A 527 THR PHE ASP SER SER GLY GLN LEU VAL TYR ASN PRO MET SEQRES 18 A 527 GLY HIS MET GLY PHE TRP GLY ASP THR ILE LEU VAL ASN SEQRES 19 A 527 LEU THR PRO ASN PRO TYR MET ASP VAL GLU ARG LYS ILE SEQRES 20 A 527 TYR ARG PHE ARG ILE LEU ASN GLY SER ASN ALA ARG PRO SEQRES 21 A 527 TYR ARG LEU ALA LEU LEU ARG GLY ASN GLN ARG MET ARG SEQRES 22 A 527 PHE TRP VAL ILE GLY VAL GLU GLY GLY LEU LEU ASP THR SEQRES 23 A 527 PRO LYS GLU VAL ASN GLU ILE LEU VAL ALA PRO GLY GLU SEQRES 24 A 527 ARG ILE ASP ILE LEU VAL ASP PHE ARG ASP ALA SER VAL SEQRES 25 A 527 ASN ASP VAL ILE LYS LEU TYR ASN PHE PRO HIS ASN LEU SEQRES 26 A 527 ILE GLY MET GLY MET ILE GLY MET ARG MET GLY MET GLY SEQRES 27 A 527 MET GLU ARG GLY MET GLY MET GLY ASN GLY MET ASN MET SEQRES 28 A 527 ASP MET GLY MET ALA ASP ASN SER GLU PHE GLU VAL MET SEQRES 29 A 527 GLU PHE ARG VAL THR LYS ASP SER ALA TYR ASP LYS SER SEQRES 30 A 527 ILE PRO GLN ARG LEU SER GLU VAL THR PRO ILE ASN THR SEQRES 31 A 527 ASP GLY ALA GLN VAL GLN ARG ILE THR LEU GLY MET ARG SEQRES 32 A 527 ARG MET VAL PHE THR ILE ASN GLY GLU THR TRP GLU ASP SEQRES 33 A 527 GLY TYR ALA ASN PRO GLN ASP ILE ASN ASN PRO LYS VAL SEQRES 34 A 527 LEU PHE GLU GLN ASN ASN GLY ASP VAL VAL ILE ILE GLU SEQRES 35 A 527 TYR VAL ASN ASN THR GLY MET TYR HIS PRO MET HIS ILE SEQRES 36 A 527 HIS GLY PHE GLN PHE GLN VAL LEU GLU ARG SER LEU GLY SEQRES 37 A 527 PRO LEU ARG ALA THR ASP LEU GLY TRP LYS ASP THR VAL SEQRES 38 A 527 ILE VAL ALA PRO MET GLU THR VAL ARG ILE ALA VAL ASP SEQRES 39 A 527 MET SER HIS PRO TYR ASN GLU HIS GLN ILE TYR LEU LEU SEQRES 40 A 527 HIS CYS HIS ILE LEU GLU HIS HIS ASP GLU GLY MET MET SEQRES 41 A 527 VAL ASN TYR ARG VAL ASN ALA HET CU A 701 1 HET CU A 702 1 HET CU A 703 1 HET CU A 704 1 HET O A 705 1 HETNAM CU COPPER (II) ION HETNAM O OXYGEN ATOM FORMUL 2 CU 4(CU 2+) FORMUL 6 O O FORMUL 7 HOH *238(H2 O) HELIX 1 AA1 PRO A 125 ASP A 129 5 5 HELIX 2 AA2 HIS A 131 ALA A 135 5 5 HELIX 3 AA3 ARG A 165 GLY A 173 1 9 HELIX 4 AA4 ASP A 182 ASP A 193 1 12 HELIX 5 AA5 ARG A 308 ALA A 310 5 3 HELIX 6 AA6 ARG A 471 LEU A 475 5 5 HELIX 7 AA7 ILE A 511 GLU A 517 1 7 SHEET 1 AA1 6 GLN A 47 SER A 48 0 SHEET 2 AA1 6 PRO A 239 GLU A 244 1 O TYR A 240 N GLN A 47 SHEET 3 AA1 6 PHE A 361 LYS A 370 1 O ARG A 367 N VAL A 243 SHEET 4 AA1 6 VAL A 315 PHE A 321 -1 N ILE A 316 O PHE A 366 SHEET 5 AA1 6 TYR A 261 ARG A 267 -1 N ALA A 264 O TYR A 319 SHEET 6 AA1 6 GLN A 270 ARG A 271 -1 O GLN A 270 N ARG A 267 SHEET 1 AA2 6 GLN A 47 SER A 48 0 SHEET 2 AA2 6 PRO A 239 GLU A 244 1 O TYR A 240 N GLN A 47 SHEET 3 AA2 6 PHE A 361 LYS A 370 1 O ARG A 367 N VAL A 243 SHEET 4 AA2 6 VAL A 315 PHE A 321 -1 N ILE A 316 O PHE A 366 SHEET 5 AA2 6 TYR A 261 ARG A 267 -1 N ALA A 264 O TYR A 319 SHEET 6 AA2 6 ILE A 293 VAL A 295 -1 O ILE A 293 N LEU A 263 SHEET 1 AA3 5 TYR A 54 LEU A 56 0 SHEET 2 AA3 5 VAL A 94 ARG A 98 1 O PHE A 96 N PHE A 55 SHEET 3 AA3 5 GLY A 176 GLU A 181 1 O ILE A 179 N ILE A 95 SHEET 4 AA3 5 GLY A 154 PRO A 160 -1 N TYR A 156 O ILE A 178 SHEET 5 AA3 5 ILE A 117 HIS A 120 -1 N HIS A 118 O HIS A 159 SHEET 1 AA4 4 THR A 80 GLU A 86 0 SHEET 2 AA4 4 VAL A 63 LEU A 72 -1 N THR A 66 O GLU A 86 SHEET 3 AA4 4 ALA A 105 ASN A 110 1 O ASP A 106 N ILE A 65 SHEET 4 AA4 4 THR A 141 SER A 143 -1 O TYR A 142 N PHE A 107 SHEET 1 AA5 2 THR A 102 PHE A 103 0 SHEET 2 AA5 2 PHE A 147 THR A 148 -1 O PHE A 147 N PHE A 103 SHEET 1 AA6 7 THR A 236 PRO A 237 0 SHEET 2 AA6 7 THR A 230 VAL A 233 -1 N VAL A 233 O THR A 236 SHEET 3 AA6 7 ASP A 200 LYS A 208 -1 N GLN A 206 O LEU A 232 SHEET 4 AA6 7 ILE A 247 ASN A 254 1 O ARG A 249 N ILE A 201 SHEET 5 AA6 7 ARG A 300 ASP A 306 -1 O VAL A 305 N TYR A 248 SHEET 6 AA6 7 PHE A 274 VAL A 279 -1 N ILE A 277 O ASP A 302 SHEET 7 AA6 7 GLY A 282 VAL A 290 -1 O VAL A 290 N PHE A 274 SHEET 1 AA7 5 PHE A 407 ILE A 409 0 SHEET 2 AA7 5 GLN A 394 MET A 402 -1 N GLY A 401 O THR A 408 SHEET 3 AA7 5 ASP A 437 ASN A 445 1 O ILE A 440 N GLN A 394 SHEET 4 AA7 5 THR A 488 MET A 495 -1 O VAL A 493 N VAL A 439 SHEET 5 AA7 5 GLN A 461 ARG A 465 -1 N LEU A 463 O ARG A 490 SHEET 1 AA8 5 GLU A 432 GLN A 433 0 SHEET 2 AA8 5 MET A 520 VAL A 525 1 O ARG A 524 N GLN A 433 SHEET 3 AA8 5 GLN A 503 CYS A 509 -1 N GLN A 503 O VAL A 525 SHEET 4 AA8 5 HIS A 451 ILE A 455 -1 N HIS A 454 O HIS A 508 SHEET 5 AA8 5 THR A 480 VAL A 483 -1 O VAL A 481 N MET A 453 LINK NE2 HIS A 118 CU CU A 703 1555 1555 2.20 LINK ND1 HIS A 120 CU CU A 704 1555 1555 1.96 LINK NE2 HIS A 159 CU CU A 704 1555 1555 1.83 LINK NE2 HIS A 161 CU CU A 702 1555 1555 2.02 LINK ND1 HIS A 451 CU CU A 701 1555 1555 2.19 LINK NE2 HIS A 454 CU CU A 703 1555 1555 2.10 LINK NE2 HIS A 456 CU CU A 702 1555 1555 2.06 LINK NE2 HIS A 508 CU CU A 702 1555 1555 2.22 LINK SG CYS A 509 CU CU A 701 1555 1555 2.04 LINK NE2 HIS A 510 CU CU A 704 1555 1555 2.31 LINK ND1 HIS A 514 CU CU A 701 1555 1555 1.99 LINK CU CU A 702 O O A 705 1555 1555 2.10 LINK CU CU A 703 O O A 705 1555 1555 2.51 LINK CU CU A 704 O O A 705 1555 1555 2.42 SITE 1 AC1 4 HIS A 451 CYS A 509 HIS A 514 MET A 519 SITE 1 AC2 6 HIS A 118 HIS A 161 HIS A 456 HIS A 508 SITE 2 AC2 6 CU A 703 O A 705 SITE 1 AC3 7 HIS A 118 HIS A 120 HIS A 454 HIS A 456 SITE 2 AC3 7 CU A 702 CU A 704 O A 705 SITE 1 AC4 5 HIS A 120 HIS A 159 HIS A 510 CU A 703 SITE 2 AC4 5 O A 705 SITE 1 AC5 11 HIS A 118 HIS A 120 HIS A 159 HIS A 161 SITE 2 AC5 11 HIS A 454 HIS A 456 HIS A 508 HIS A 510 SITE 3 AC5 11 CU A 702 CU A 703 CU A 704 CRYST1 52.920 98.927 98.589 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010143 0.00000