HEADER TRANSFERASE 16-APR-19 6RGA TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEXE WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 GENE: NADK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETRAMERIC NAD KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.LABESSE REVDAT 2 25-MAR-20 6RGA 1 JRNL REVDAT 1 19-FEB-20 6RGA 0 JRNL AUTH M.GELIN,J.PAOLETTI,M.A.NAHORI,V.HUTEAU,C.LESEIGNEUR, JRNL AUTH 2 G.JOUVION,L.DUGUE,D.CLEMENT,J.L.PONS,L.ASSAIRI,S.POCHET, JRNL AUTH 3 G.LABESSE,O.DUSSURGET JRNL TITL FROM SUBSTRATE TO FRAGMENTS TO INHIBITOR ACTIVEIN JRNL TITL 2 VIVOAGAINSTSTAPHYLOCOCCUS AUREUS. JRNL REF ACS INFECT DIS. V. 6 422 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32017533 JRNL DOI 10.1021/ACSINFECDIS.9B00368 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9792 - 3.7267 0.98 2910 153 0.1787 0.1909 REMARK 3 2 3.7267 - 2.9585 1.00 2875 129 0.2007 0.2283 REMARK 3 3 2.9585 - 2.5847 1.00 2828 162 0.2392 0.2748 REMARK 3 4 2.5847 - 2.3484 1.00 2801 158 0.2478 0.2840 REMARK 3 5 2.3484 - 2.1801 1.00 2792 156 0.3172 0.3571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7104 23.8946 22.8470 REMARK 3 T TENSOR REMARK 3 T11: 0.4740 T22: 0.5514 REMARK 3 T33: 0.3573 T12: 0.1261 REMARK 3 T13: 0.0396 T23: -0.1498 REMARK 3 L TENSOR REMARK 3 L11: 2.8400 L22: 0.7244 REMARK 3 L33: 4.4301 L12: -0.3287 REMARK 3 L13: -1.7416 L23: 0.8531 REMARK 3 S TENSOR REMARK 3 S11: -0.1108 S12: -0.6229 S13: 0.2834 REMARK 3 S21: 0.1648 S22: 0.0715 S23: 0.1527 REMARK 3 S31: -0.3081 S32: -0.3719 S33: 0.1186 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5718 25.9502 6.9792 REMARK 3 T TENSOR REMARK 3 T11: 0.4292 T22: 0.4318 REMARK 3 T33: 0.3951 T12: 0.2125 REMARK 3 T13: 0.1026 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 2.4493 L22: 1.8997 REMARK 3 L33: 1.9321 L12: -0.4750 REMARK 3 L13: -1.6089 L23: -0.9455 REMARK 3 S TENSOR REMARK 3 S11: 0.2750 S12: 0.0896 S13: 0.7402 REMARK 3 S21: -0.1707 S22: -0.1707 S23: 0.2784 REMARK 3 S31: -0.9981 S32: -0.7155 S33: -0.0014 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9596 9.6661 -5.0348 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.2965 REMARK 3 T33: 0.2106 T12: 0.0237 REMARK 3 T13: -0.0092 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.2199 L22: 2.4584 REMARK 3 L33: 5.6763 L12: -0.5183 REMARK 3 L13: 0.3615 L23: 0.5052 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: 0.1476 S13: 0.0020 REMARK 3 S21: -0.0792 S22: -0.0627 S23: 0.2387 REMARK 3 S31: 0.0773 S32: -0.4671 S33: 0.0861 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6773 11.3635 -6.9756 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.2684 REMARK 3 T33: 0.1740 T12: 0.0420 REMARK 3 T13: -0.0097 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.8992 L22: 2.7916 REMARK 3 L33: 3.3698 L12: 0.2866 REMARK 3 L13: 0.2598 L23: -0.2753 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.2572 S13: 0.0824 REMARK 3 S21: -0.1917 S22: -0.0839 S23: 0.3906 REMARK 3 S31: 0.0093 S32: -0.3283 S33: 0.1310 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2285 13.7168 -3.5333 REMARK 3 T TENSOR REMARK 3 T11: 0.2559 T22: 0.6954 REMARK 3 T33: 0.5683 T12: 0.1161 REMARK 3 T13: -0.0275 T23: -0.1052 REMARK 3 L TENSOR REMARK 3 L11: 0.6470 L22: 2.7466 REMARK 3 L33: 4.5414 L12: -0.1215 REMARK 3 L13: 1.5278 L23: 1.2798 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: 0.1556 S13: 0.2755 REMARK 3 S21: -0.0668 S22: -0.3402 S23: 0.9665 REMARK 3 S31: 0.1095 S32: -1.4558 S33: 0.2164 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3836 19.9970 16.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.2910 REMARK 3 T33: 0.2624 T12: -0.0428 REMARK 3 T13: 0.0340 T23: -0.1130 REMARK 3 L TENSOR REMARK 3 L11: 3.9646 L22: 4.1927 REMARK 3 L33: 2.1709 L12: -1.4742 REMARK 3 L13: -0.6646 L23: 1.8939 REMARK 3 S TENSOR REMARK 3 S11: -0.1566 S12: -0.7378 S13: 0.4573 REMARK 3 S21: 0.6573 S22: 0.1247 S23: -0.3804 REMARK 3 S31: -0.3138 S32: -0.1310 S33: -0.0138 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.872600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 37.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM NABR, 220 MM KCITRATE, GLYCEROL REMARK 280 6%, 15-16% W/V PEG400, PH 5.0, EVAPORATION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.59000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.36500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.36500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.59000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.36500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.36500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.59000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.36500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.36500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.59000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.36500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.36500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 63.18000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 63.18000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 436 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 480 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 110 REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LYS A 114 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 94 56.84 -91.58 REMARK 500 ASN A 122 -74.28 -98.08 REMARK 500 SER A 129 41.84 -83.07 REMARK 500 ALA A 162 -127.27 -108.72 REMARK 500 HIS A 204 -5.52 70.05 REMARK 500 VAL A 212 -64.29 -106.99 REMARK 500 ASN A 213 -90.92 -107.96 REMARK 500 ASP A 222 -128.82 61.86 REMARK 500 GLU A 263 146.92 174.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K3E A 302 DBREF 6RGA A 1 264 UNP Q8Y8D7 NADK1_LISMO 1 264 SEQADV 6RGA LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RGA GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RGA HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RGA HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RGA HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RGA HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RGA HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RGA HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CIT A 301 13 HET K3E A 302 41 HETNAM CIT CITRIC ACID HETNAM K3E (2~{R},3~{S},4~{R},5~{R})-2-(AMINOMETHYL)-5-[8-[3- HETNAM 2 K3E [[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 3 K3E BIS(OXIDANYL)OXOLAN-2-YL]METHOXY]PROP-1-YNYL]-6- HETNAM 4 K3E AZANYL-PURIN-9-YL]OXOLANE-3,4-DIOL FORMUL 2 CIT C6 H8 O7 FORMUL 3 K3E C23 H27 N11 O7 FORMUL 4 HOH *89(H2 O) HELIX 1 AA1 ASP A 10 GLU A 26 1 17 HELIX 2 AA2 GLY A 44 TYR A 55 1 12 HELIX 3 AA3 ARG A 58 ILE A 62 5 5 HELIX 4 AA4 ARG A 79 ALA A 81 5 3 HELIX 5 AA5 GLU A 82 LYS A 92 1 11 HELIX 6 AA6 PRO A 157 THR A 161 5 5 HELIX 7 AA7 ALA A 162 LEU A 167 1 6 HELIX 8 AA8 PRO A 252 ILE A 262 1 11 SHEET 1 AA1 4 GLU A 30 TYR A 31 0 SHEET 2 AA1 4 LYS A 2 SER A 7 1 N TYR A 3 O GLU A 30 SHEET 3 AA1 4 ILE A 38 GLY A 43 1 O ILE A 40 N THR A 6 SHEET 4 AA1 4 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 1 AA2 6 ALA A 116 ALA A 120 0 SHEET 2 AA2 6 GLN A 96 LYS A 108 -1 N VAL A 107 O ALA A 116 SHEET 3 AA2 6 GLU A 233 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 AA2 6 VAL A 207 PRO A 211 -1 N LEU A 209 O ILE A 234 SHEET 5 AA2 6 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 6 AA2 6 ILE A 142 GLY A 149 -1 O PHE A 144 N VAL A 137 SHEET 1 AA3 6 LEU A 199 PRO A 202 0 SHEET 2 AA3 6 ALA A 178 MET A 184 -1 N MET A 179 O PHE A 201 SHEET 3 AA3 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180 SHEET 4 AA3 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 5 AA3 6 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127 SHEET 6 AA3 6 LEU A 224 HIS A 228 -1 O ILE A 226 N ILE A 219 SITE 1 AC1 9 TYR A 100 HIS A 173 ARG A 247 PHE A 251 SITE 2 AC1 9 PRO A 252 PHE A 253 ARG A 256 HOH A 404 SITE 3 AC1 9 HOH A 450 SITE 1 AC2 19 ASP A 45 GLY A 46 LEU A 49 PHE A 74 SITE 2 AC2 19 TYR A 75 ASN A 122 GLU A 123 ASP A 150 SITE 3 AC2 19 SER A 158 THR A 161 ALA A 162 TYR A 163 SITE 4 AC2 19 SER A 166 ALA A 185 ILE A 187 HIS A 223 SITE 5 AC2 19 HOH A 434 HOH A 439 HOH A 444 CRYST1 63.180 74.730 118.730 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015828 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008422 0.00000