HEADER DNA BINDING PROTEIN/DNA 04-NOV-19 6L84 TITLE COMPLEX OF DNA POLYMERASE IV AND D-DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3'); COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS.; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*CP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)- COMPND 15 3'); COMPND 16 CHAIN: T; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROLOBUS SOLFATARICUS (STRAIN ATCC 35092 / SOURCE 3 DSM 1617 / JCM 11322 / P2); SOURCE 4 ORGANISM_TAXID: 273057; SOURCE 5 STRAIN: ATCC 35092 / DSM 1617 / JCM 11322 / P2; SOURCE 6 GENE: DBH, DPO4, SSO2448; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS DPO4, D-DNA DUPLEX, DNA POLYMERASE, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.S.CHUNG,J.AN,D.HWANG REVDAT 2 22-NOV-23 6L84 1 LINK REVDAT 1 08-JUL-20 6L84 0 JRNL AUTH J.AN,J.CHOI,D.HWANG,J.PARK,C.W.PEMBLE 4TH,T.H.M.DUONG, JRNL AUTH 2 K.R.KIM,H.AHN,H.S.CHUNG,D.R.AHN JRNL TITL THE CRYSTAL STRUCTURE OF A NATURAL DNA POLYMERASE COMPLEXED JRNL TITL 2 WITH MIRROR DNA. JRNL REF CHEM.COMMUN.(CAMB.) V. 56 2186 2020 JRNL REFN ESSN 1364-548X JRNL PMID 31971182 JRNL DOI 10.1039/C9CC09351F REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.530 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 26904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8720 - 6.9363 0.98 1453 169 0.1834 0.2270 REMARK 3 2 6.9363 - 5.5087 1.00 1471 171 0.2014 0.1972 REMARK 3 3 5.5087 - 4.8133 1.00 1460 166 0.1552 0.2187 REMARK 3 4 4.8133 - 4.3736 1.00 1478 164 0.1418 0.1674 REMARK 3 5 4.3736 - 4.0604 1.00 1456 170 0.1367 0.1889 REMARK 3 6 4.0604 - 3.8211 1.00 1484 168 0.1597 0.2106 REMARK 3 7 3.8211 - 3.6298 1.00 1476 174 0.1697 0.2187 REMARK 3 8 3.6298 - 3.4719 0.99 1444 165 0.1696 0.2205 REMARK 3 9 3.4719 - 3.3383 0.98 1451 158 0.1765 0.2768 REMARK 3 10 3.3383 - 3.2231 0.97 1452 154 0.1913 0.2236 REMARK 3 11 3.2231 - 3.1224 0.95 1374 142 0.2106 0.2722 REMARK 3 12 3.1224 - 3.0331 0.89 1327 149 0.2231 0.2454 REMARK 3 13 3.0331 - 2.9533 0.85 1247 141 0.2263 0.2753 REMARK 3 14 2.9533 - 2.8813 0.79 1154 137 0.2266 0.2487 REMARK 3 15 2.8813 - 2.8158 0.72 1069 118 0.2265 0.2560 REMARK 3 16 2.8158 - 2.7558 0.67 980 108 0.2280 0.3155 REMARK 3 17 2.7558 - 2.7007 0.60 883 103 0.2608 0.2719 REMARK 3 18 2.7007 - 2.6498 0.56 814 86 0.2599 0.2862 REMARK 3 19 2.6498 - 2.6025 0.47 708 80 0.2682 0.3486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -16.5985 -21.7208 17.6586 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.1247 REMARK 3 T33: 0.1070 T12: -0.0482 REMARK 3 T13: -0.0144 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.4128 L22: 0.9925 REMARK 3 L33: 0.7060 L12: -0.2048 REMARK 3 L13: -0.2508 L23: -0.0620 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: -0.1105 S13: 0.0608 REMARK 3 S21: 0.0585 S22: 0.0846 S23: -0.1184 REMARK 3 S31: 0.0783 S32: 0.0627 S33: 0.0198 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2BQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS (PH 7.0), 0.1 M CALCIUM REMARK 280 ACETATE, 2% GLYCEROL, AND 9% W/V PEG3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.33200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.38450 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.33200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.38450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 342 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 LEU A 353 REMARK 465 GLU A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 DT T -2 REMARK 465 DC T -1 REMARK 465 DA T 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG P 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 58.75 30.53 REMARK 500 ARG A 36 -76.71 -82.04 REMARK 500 ARG A 77 79.16 -117.21 REMARK 500 SER A 145 -163.50 -162.58 REMARK 500 ASN A 234 49.08 -152.50 REMARK 500 ARG A 253 132.73 74.53 REMARK 500 ASP A 277 -121.08 58.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 568 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 6.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 105 OD1 113.9 REMARK 620 3 ASP A 105 OD2 124.1 47.0 REMARK 620 4 GLU A 106 OE1 76.7 81.8 128.5 REMARK 620 5 HOH A 521 O 65.6 154.8 155.8 73.5 REMARK 620 6 HOH A 535 O 91.2 128.9 81.9 149.1 75.6 REMARK 620 7 DC P 14 OP1 136.3 96.9 99.5 78.0 73.3 92.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 8 O REMARK 620 2 ASP A 105 OD2 108.1 REMARK 620 3 HOH A 535 O 114.0 82.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 87.5 REMARK 620 3 HOH A 528 O 150.8 96.0 REMARK 620 4 HOH A 534 O 90.3 166.7 92.2 REMARK 620 5 HOH A 558 O 101.0 97.8 107.1 69.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 DBREF 6L84 A 1 352 UNP Q97W02 DPO4_SACS2 1 352 DBREF 6L84 P 1 14 PDB 6L84 6L84 1 14 DBREF 6L84 T -2 15 PDB 6L84 6L84 -2 15 SEQADV 6L84 LEU A 353 UNP Q97W02 EXPRESSION TAG SEQADV 6L84 GLU A 354 UNP Q97W02 EXPRESSION TAG SEQADV 6L84 HIS A 355 UNP Q97W02 EXPRESSION TAG SEQADV 6L84 HIS A 356 UNP Q97W02 EXPRESSION TAG SEQADV 6L84 HIS A 357 UNP Q97W02 EXPRESSION TAG SEQADV 6L84 HIS A 358 UNP Q97W02 EXPRESSION TAG SEQADV 6L84 HIS A 359 UNP Q97W02 EXPRESSION TAG SEQADV 6L84 HIS A 360 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 360 MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 360 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 360 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 360 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 360 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 360 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 360 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 360 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 360 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 360 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 360 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 360 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 360 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 360 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 360 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 360 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 360 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 360 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 360 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 360 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 360 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 360 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 360 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 360 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 360 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 360 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 360 LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP SEQRES 28 A 360 THR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 P 14 DG DG DG DG DG DA DA DG DG DA DT DT DC SEQRES 2 P 14 DC SEQRES 1 T 18 DT DC DA DC DG DG DA DA DT DC DC DT DT SEQRES 2 T 18 DC DC DC DC DC HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HETNAM CA CALCIUM ION FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *108(H2 O) HELIX 1 AA1 TYR A 10 ASN A 20 1 11 HELIX 2 AA2 PRO A 21 LYS A 24 5 4 HELIX 3 AA3 ASN A 47 LYS A 52 1 6 HELIX 4 AA4 PRO A 60 LEU A 68 1 9 HELIX 5 AA5 ARG A 77 ARG A 93 1 17 HELIX 6 AA6 ASP A 117 LYS A 137 1 21 HELIX 7 AA7 ASN A 147 LYS A 159 1 13 HELIX 8 AA8 ASP A 167 LEU A 178 1 12 HELIX 9 AA9 ASP A 179 VAL A 183 5 5 HELIX 10 AB1 GLY A 187 LYS A 196 1 10 HELIX 11 AB2 LYS A 201 LEU A 206 5 6 HELIX 12 AB3 GLU A 209 GLY A 218 1 10 HELIX 13 AB4 GLY A 218 ARG A 230 1 13 HELIX 14 AB5 ASN A 257 ASP A 277 1 21 HELIX 15 AB6 SER A 307 ASP A 326 1 20 SHEET 1 AA1 5 ILE A 99 SER A 103 0 SHEET 2 AA1 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 AA1 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 AA1 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 AA1 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 AA2 3 GLY A 41 ALA A 46 0 SHEET 2 AA2 3 VAL A 28 PHE A 33 -1 N VAL A 30 O THR A 45 SHEET 3 AA2 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 AA3 4 SER A 244 SER A 255 0 SHEET 2 AA3 4 ILE A 330 PHE A 340 -1 O ILE A 333 N VAL A 249 SHEET 3 AA3 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 AA3 4 ILE A 295 THR A 301 -1 O ARG A 298 N VAL A 286 LINK OD2 ASP A 7 CA CA A 401 1555 1555 2.45 LINK O PHE A 8 CA CA A 403 1555 1555 2.69 LINK OD1 ASP A 105 CA CA A 401 1555 1555 2.67 LINK OD2 ASP A 105 CA CA A 401 1555 1555 2.81 LINK OD2 ASP A 105 CA CA A 403 1555 1555 2.49 LINK OE1 GLU A 106 CA CA A 401 1555 1555 2.46 LINK O ALA A 181 CA CA A 402 1555 1555 2.41 LINK O ILE A 186 CA CA A 402 1555 1555 2.50 LINK CA CA A 401 O HOH A 521 1555 1555 2.66 LINK CA CA A 401 O HOH A 535 1555 1555 2.47 LINK CA CA A 401 OP1 DC P 14 1555 1555 2.36 LINK CA CA A 402 O HOH A 528 1555 1555 2.69 LINK CA CA A 402 O HOH A 534 1555 1555 2.58 LINK CA CA A 402 O HOH A 558 1555 1555 2.79 LINK CA CA A 403 O HOH A 535 1555 1555 2.76 CISPEP 1 LYS A 159 PRO A 160 0 -1.49 SITE 1 AC1 6 ASP A 7 ASP A 105 GLU A 106 HOH A 521 SITE 2 AC1 6 HOH A 535 DC P 14 SITE 1 AC2 5 ALA A 181 ILE A 186 HOH A 528 HOH A 534 SITE 2 AC2 5 HOH A 558 SITE 1 AC3 6 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC3 6 ASP A 105 HOH A 535 CRYST1 52.763 98.664 100.769 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009924 0.00000