HEADER HYDROLASE 17-JUL-19 6KI8 TITLE PYROPHOSPHATASE MUTANT K149R FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PYROPHOSPHATE PHOSPHO-HYDROLASE,PPASE; COMPND 5 EC: 3.6.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: PPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYROPHOSPHATASE, MUTANT K149R, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SU REVDAT 2 27-MAR-24 6KI8 1 LINK REVDAT 1 02-OCT-19 6KI8 0 JRNL AUTH Y.SI,X.WANG,G.YANG,T.YANG,Y.LI,G.J.AYALA,X.LI,H.WANG,J.SU JRNL TITL CRYSTAL STRUCTURES OF PYROPHOSPHATASE FROM ACINETOBACTER JRNL TITL 2 BAUMANNII: SNAPSHOTS OF PYROPHOSPHATE BINDING AND JRNL TITL 3 IDENTIFICATION OF A PHOSPHORYLATED ENZYME INTERMEDIATE. JRNL REF INT J MOL SCI V. 20 2019 JRNL REFN ESSN 1422-0067 JRNL PMID 31500178 JRNL DOI 10.3390/IJMS20184394 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 71672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9870 - 4.3008 1.00 5289 150 0.1522 0.1811 REMARK 3 2 4.3008 - 3.4193 1.00 5088 143 0.1348 0.1386 REMARK 3 3 3.4193 - 2.9887 1.00 5027 146 0.1528 0.1820 REMARK 3 4 2.9887 - 2.7161 1.00 4970 142 0.1711 0.1869 REMARK 3 5 2.7161 - 2.5219 1.00 5000 146 0.1790 0.2056 REMARK 3 6 2.5219 - 2.3734 1.00 4948 136 0.1738 0.2190 REMARK 3 7 2.3734 - 2.2547 1.00 4933 149 0.1638 0.1801 REMARK 3 8 2.2547 - 2.1567 1.00 4941 144 0.1556 0.1995 REMARK 3 9 2.1567 - 2.0738 1.00 4930 142 0.1636 0.2269 REMARK 3 10 2.0738 - 2.0023 1.00 4920 135 0.1595 0.1819 REMARK 3 11 2.0023 - 1.9397 1.00 4914 145 0.1648 0.1730 REMARK 3 12 1.9397 - 1.8843 1.00 4877 140 0.1692 0.1761 REMARK 3 13 1.8843 - 1.8347 1.00 4924 141 0.1761 0.1963 REMARK 3 14 1.8347 - 1.7900 1.00 4923 129 0.2079 0.2640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4185 REMARK 3 ANGLE : 0.852 5715 REMARK 3 CHIRALITY : 0.059 624 REMARK 3 PLANARITY : 0.006 744 REMARK 3 DIHEDRAL : 7.253 2529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71750 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 19.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SALT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.85200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.37750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.37750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.42600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.37750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.37750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.27800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.37750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.37750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.42600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.37750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.37750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.27800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.85200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -279.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 478 LIES ON A SPECIAL POSITION. REMARK 450 REMARK 450 SOURCE REMARK 450 THE PROTEIN WAS FROM A STRAIN OF ACINETOBACTER BAUMANNII FROM A REMARK 450 HOSPITAL. THE SEQUENCE REFERENCE USED IS FROM A DIFFERENT SPECIES REMARK 450 ACINETOBACTER URSINGII NIPH 706. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS C 118 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 70.76 -151.77 REMARK 500 ASP B 10 68.44 -154.14 REMARK 500 ASP C 10 72.32 -157.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 490 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 503 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 504 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 70 OD1 REMARK 620 2 ASP A 70 OD2 45.5 REMARK 620 3 DPO A 201 O1 138.8 109.4 REMARK 620 4 HOH A 352 O 119.5 152.6 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD2 REMARK 620 2 ASP A 102 OD2 100.6 REMARK 620 3 DPO A 201 O3 156.5 95.5 REMARK 620 4 DPO A 201 O5 82.5 176.9 81.6 REMARK 620 5 HOH A 335 O 86.6 90.7 110.4 89.3 REMARK 620 6 HOH A 387 O 82.9 76.8 84.2 103.8 161.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DPO A 201 O2 REMARK 620 2 HOH A 446 O 116.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 65 OD2 REMARK 620 2 ASP B 70 OD2 123.7 REMARK 620 3 DPO B 201 O1 112.2 115.8 REMARK 620 4 HOH B 302 O 45.6 145.2 96.3 REMARK 620 5 HOH B 310 O 99.3 92.4 108.3 63.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 97 OD2 REMARK 620 2 ASP B 102 OD2 99.9 REMARK 620 3 DPO B 201 O3 159.5 95.9 REMARK 620 4 DPO B 201 O7 83.3 176.8 80.9 REMARK 620 5 HOH B 343 O 88.2 87.4 105.5 92.7 REMARK 620 6 HOH B 372 O 82.3 80.9 87.5 99.7 163.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DPO B 201 O2 REMARK 620 2 HOH B 310 O 107.6 REMARK 620 3 HOH B 435 O 137.5 109.6 REMARK 620 4 HOH B 453 O 121.5 55.1 67.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 65 OD2 REMARK 620 2 ASP C 70 OD2 128.5 REMARK 620 3 DPO C 201 O1 114.2 107.8 REMARK 620 4 HOH C 308 O 104.6 92.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 97 OD2 REMARK 620 2 ASP C 102 OD2 99.6 REMARK 620 3 DPO C 201 O3 158.9 96.4 REMARK 620 4 DPO C 201 O5 83.4 176.9 80.8 REMARK 620 5 HOH C 354 O 88.3 86.1 106.5 93.2 REMARK 620 6 HOH C 386 O 82.4 82.3 86.2 99.0 163.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DPO C 201 O2 REMARK 620 2 HOH C 308 O 117.8 REMARK 620 3 HOH C 322 O 114.9 94.0 REMARK 620 4 HOH C 411 O 130.0 106.3 82.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 204 DBREF 6KI8 A 0 173 UNP N9S5K0 N9S5K0_9GAMM 1 174 DBREF 6KI8 B 0 173 UNP N9S5K0 N9S5K0_9GAMM 1 174 DBREF 6KI8 C 0 173 UNP N9S5K0 N9S5K0_9GAMM 1 174 SEQADV 6KI8 GLY A -3 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 SER A -2 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 HIS A -1 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 SER A 139 UNP N9S5K0 ALA 140 ENGINEERED MUTATION SEQADV 6KI8 ARG A 148 UNP N9S5K0 LYS 149 ENGINEERED MUTATION SEQADV 6KI8 GLY B -3 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 SER B -2 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 HIS B -1 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 SER B 139 UNP N9S5K0 ALA 140 ENGINEERED MUTATION SEQADV 6KI8 ARG B 148 UNP N9S5K0 LYS 149 ENGINEERED MUTATION SEQADV 6KI8 GLY C -3 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 SER C -2 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 HIS C -1 UNP N9S5K0 EXPRESSION TAG SEQADV 6KI8 SER C 139 UNP N9S5K0 ALA 140 ENGINEERED MUTATION SEQADV 6KI8 ARG C 148 UNP N9S5K0 LYS 149 ENGINEERED MUTATION SEQRES 1 A 177 GLY SER HIS MET SER TYR ASN ASN ILE PRO ALA GLY LYS SEQRES 2 A 177 ASP ALA PRO ASN ASP ILE TYR VAL ILE ILE GLU ILE PRO SEQRES 3 A 177 ALA ASN ALA ALA PRO ILE LYS TYR GLU ILE ASP LYS ASP SEQRES 4 A 177 SER ASP ALA LEU PHE VAL ASP ARG PHE MET GLY THR ALA SEQRES 5 A 177 MET PHE TYR PRO ALA ASN TYR GLY TYR VAL PRO ASN THR SEQRES 6 A 177 LEU SER GLU ASP GLY ASP PRO LEU ASP VAL LEU VAL VAL SEQRES 7 A 177 THR PRO TYR PRO VAL ALA ALA GLY SER VAL ILE ARG CYS SEQRES 8 A 177 ARG PRO VAL GLY LYS LEU ASN MET GLU ASP ASP GLY GLY SEQRES 9 A 177 ILE ASP ALA LYS LEU ILE ALA VAL PRO HIS GLU LYS LEU SEQRES 10 A 177 SER PRO LEU TYR LYS ASP VAL LYS GLU TYR THR ASP LEU SEQRES 11 A 177 PRO GLN LEU LEU ILE ASN GLN VAL GLU HIS PHE PHE SER SEQRES 12 A 177 HIS TYR LYS ASP LEU GLU PRO GLY ARG TRP VAL LYS ILE SEQRES 13 A 177 SER GLY TRP GLU GLY ALA ASP VAL ALA LYS ALA GLU VAL SEQRES 14 A 177 ILE LYS ALA ILE GLU ALA ALA LYS SEQRES 1 B 177 GLY SER HIS MET SER TYR ASN ASN ILE PRO ALA GLY LYS SEQRES 2 B 177 ASP ALA PRO ASN ASP ILE TYR VAL ILE ILE GLU ILE PRO SEQRES 3 B 177 ALA ASN ALA ALA PRO ILE LYS TYR GLU ILE ASP LYS ASP SEQRES 4 B 177 SER ASP ALA LEU PHE VAL ASP ARG PHE MET GLY THR ALA SEQRES 5 B 177 MET PHE TYR PRO ALA ASN TYR GLY TYR VAL PRO ASN THR SEQRES 6 B 177 LEU SER GLU ASP GLY ASP PRO LEU ASP VAL LEU VAL VAL SEQRES 7 B 177 THR PRO TYR PRO VAL ALA ALA GLY SER VAL ILE ARG CYS SEQRES 8 B 177 ARG PRO VAL GLY LYS LEU ASN MET GLU ASP ASP GLY GLY SEQRES 9 B 177 ILE ASP ALA LYS LEU ILE ALA VAL PRO HIS GLU LYS LEU SEQRES 10 B 177 SER PRO LEU TYR LYS ASP VAL LYS GLU TYR THR ASP LEU SEQRES 11 B 177 PRO GLN LEU LEU ILE ASN GLN VAL GLU HIS PHE PHE SER SEQRES 12 B 177 HIS TYR LYS ASP LEU GLU PRO GLY ARG TRP VAL LYS ILE SEQRES 13 B 177 SER GLY TRP GLU GLY ALA ASP VAL ALA LYS ALA GLU VAL SEQRES 14 B 177 ILE LYS ALA ILE GLU ALA ALA LYS SEQRES 1 C 177 GLY SER HIS MET SER TYR ASN ASN ILE PRO ALA GLY LYS SEQRES 2 C 177 ASP ALA PRO ASN ASP ILE TYR VAL ILE ILE GLU ILE PRO SEQRES 3 C 177 ALA ASN ALA ALA PRO ILE LYS TYR GLU ILE ASP LYS ASP SEQRES 4 C 177 SER ASP ALA LEU PHE VAL ASP ARG PHE MET GLY THR ALA SEQRES 5 C 177 MET PHE TYR PRO ALA ASN TYR GLY TYR VAL PRO ASN THR SEQRES 6 C 177 LEU SER GLU ASP GLY ASP PRO LEU ASP VAL LEU VAL VAL SEQRES 7 C 177 THR PRO TYR PRO VAL ALA ALA GLY SER VAL ILE ARG CYS SEQRES 8 C 177 ARG PRO VAL GLY LYS LEU ASN MET GLU ASP ASP GLY GLY SEQRES 9 C 177 ILE ASP ALA LYS LEU ILE ALA VAL PRO HIS GLU LYS LEU SEQRES 10 C 177 SER PRO LEU TYR LYS ASP VAL LYS GLU TYR THR ASP LEU SEQRES 11 C 177 PRO GLN LEU LEU ILE ASN GLN VAL GLU HIS PHE PHE SER SEQRES 12 C 177 HIS TYR LYS ASP LEU GLU PRO GLY ARG TRP VAL LYS ILE SEQRES 13 C 177 SER GLY TRP GLU GLY ALA ASP VAL ALA LYS ALA GLU VAL SEQRES 14 C 177 ILE LYS ALA ILE GLU ALA ALA LYS HET DPO A 201 9 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HET DPO B 201 9 HET MG B 202 1 HET MG B 203 1 HET MG B 204 1 HET DPO C 201 9 HET MG C 202 1 HET MG C 203 1 HET MG C 204 1 HETNAM DPO DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 DPO 3(O7 P2 4-) FORMUL 5 MG 9(MG 2+) FORMUL 16 HOH *608(H2 O) HELIX 1 AA1 SER A 1 ILE A 5 5 5 HELIX 2 AA2 GLU A 122 LEU A 126 5 5 HELIX 3 AA3 PRO A 127 TYR A 141 1 15 HELIX 4 AA4 GLY A 157 ALA A 172 1 16 HELIX 5 AA5 SER B 1 ILE B 5 5 5 HELIX 6 AA6 GLU B 122 LEU B 126 5 5 HELIX 7 AA7 PRO B 127 TYR B 141 1 15 HELIX 8 AA8 GLY B 157 ALA B 172 1 16 HELIX 9 AA9 LYS B 173 LYS B 173 5 1 HELIX 10 AB1 SER C 1 ILE C 5 5 5 HELIX 11 AB2 GLU C 122 LEU C 126 5 5 HELIX 12 AB3 PRO C 127 TYR C 141 1 15 HELIX 13 AB4 GLY C 157 LYS C 173 1 17 SHEET 1 AA1 8 GLY A 100 ILE A 101 0 SHEET 2 AA1 8 VAL A 150 GLU A 156 0 SHEET 3 AA1 8 ILE A 15 ILE A 21 0 SHEET 4 AA1 8 ASN A 54 TYR A 57 -1 O TYR A 55 N GLU A 20 SHEET 5 AA1 8 ASP A 70 VAL A 73 -1 O VAL A 73 N ASN A 54 SHEET 6 AA1 8 LYS A 104 PRO A 109 1 O LEU A 105 N LEU A 72 SHEET 7 AA1 8 VAL A 84 ASP A 97 -1 N LEU A 93 O LYS A 104 SHEET 8 AA1 8 VAL A 150 GLU A 156 -1 O LYS A 151 N GLU A 96 SHEET 1 AA2 2 ILE A 28 ILE A 32 0 SHEET 2 AA2 2 LEU A 39 PHE A 44 -1 O PHE A 40 N GLU A 31 SHEET 1 AA3 8 GLY B 100 ILE B 101 0 SHEET 2 AA3 8 VAL B 150 GLU B 156 0 SHEET 3 AA3 8 ILE B 15 ILE B 21 0 SHEET 4 AA3 8 ASN B 54 TYR B 57 -1 O TYR B 55 N GLU B 20 SHEET 5 AA3 8 ASP B 70 VAL B 73 -1 O VAL B 71 N GLY B 56 SHEET 6 AA3 8 LYS B 104 PRO B 109 1 O LEU B 105 N LEU B 72 SHEET 7 AA3 8 VAL B 84 ASP B 97 -1 N LEU B 93 O LYS B 104 SHEET 8 AA3 8 VAL B 150 GLU B 156 -1 O LYS B 151 N GLU B 96 SHEET 1 AA4 2 ILE B 28 ILE B 32 0 SHEET 2 AA4 2 LEU B 39 PHE B 44 -1 O PHE B 40 N GLU B 31 SHEET 1 AA5 8 GLY C 100 ILE C 101 0 SHEET 2 AA5 8 VAL C 150 GLU C 156 0 SHEET 3 AA5 8 ILE C 15 ILE C 21 0 SHEET 4 AA5 8 ASN C 54 TYR C 57 -1 O TYR C 57 N ILE C 18 SHEET 5 AA5 8 ASP C 70 VAL C 73 -1 O VAL C 73 N ASN C 54 SHEET 6 AA5 8 LYS C 104 PRO C 109 1 O LEU C 105 N LEU C 72 SHEET 7 AA5 8 VAL C 84 ASP C 97 -1 N LEU C 93 O LYS C 104 SHEET 8 AA5 8 VAL C 150 GLU C 156 -1 O LYS C 151 N GLU C 96 SHEET 1 AA6 2 ILE C 28 ILE C 32 0 SHEET 2 AA6 2 LEU C 39 PHE C 44 -1 O PHE C 40 N GLU C 31 LINK OD1 ASP A 70 MG MG A 203 1555 1555 2.92 LINK OD2 ASP A 70 MG MG A 203 1555 1555 2.76 LINK OD2 ASP A 97 MG MG A 202 1555 1555 2.36 LINK OD2 ASP A 102 MG MG A 202 1555 1555 2.41 LINK O3 DPO A 201 MG MG A 202 1555 1555 2.38 LINK O5 DPO A 201 MG MG A 202 1555 1555 2.47 LINK O1 DPO A 201 MG MG A 203 1555 1555 2.90 LINK O2 DPO A 201 MG MG A 204 1555 1555 2.91 LINK MG MG A 202 O HOH A 335 1555 1555 2.36 LINK MG MG A 202 O HOH A 387 1555 1555 2.77 LINK MG MG A 203 O HOH A 352 1555 1555 2.65 LINK MG MG A 204 O HOH A 446 1555 1555 2.25 LINK OD2 ASP B 65 MG MG B 203 1555 1555 2.95 LINK OD2 ASP B 70 MG MG B 203 1555 1555 2.53 LINK OD2 ASP B 97 MG MG B 202 1555 1555 2.34 LINK OD2 ASP B 102 MG MG B 202 1555 1555 2.42 LINK O3 DPO B 201 MG MG B 202 1555 1555 2.35 LINK O7 DPO B 201 MG MG B 202 1555 1555 2.42 LINK O1 DPO B 201 MG MG B 203 1555 1555 2.63 LINK O2 DPO B 201 MG MG B 204 1555 1555 2.66 LINK MG MG B 202 O HOH B 343 1555 1555 2.38 LINK MG MG B 202 O HOH B 372 1555 1555 2.63 LINK MG MG B 203 O HOH B 302 1555 1555 2.96 LINK MG MG B 203 O HOH B 310 1555 1555 2.14 LINK MG MG B 204 O HOH B 310 1555 1555 2.59 LINK MG MG B 204 O HOH B 435 1555 1555 2.23 LINK MG MG B 204 O HOH B 453 1555 1555 2.78 LINK OD2 ASP C 65 MG MG C 203 1555 1555 2.65 LINK OD2 ASP C 70 MG MG C 203 1555 1555 2.50 LINK OD2 ASP C 97 MG MG C 202 1555 1555 2.38 LINK OD2 ASP C 102 MG MG C 202 1555 1555 2.37 LINK O3 DPO C 201 MG MG C 202 1555 1555 2.39 LINK O5 DPO C 201 MG MG C 202 1555 1555 2.42 LINK O1 DPO C 201 MG MG C 203 1555 1555 2.72 LINK O2 DPO C 201 MG MG C 204 1555 1555 2.67 LINK MG MG C 202 O HOH C 354 1555 1555 2.47 LINK MG MG C 202 O HOH C 386 1555 1555 2.39 LINK MG MG C 203 O HOH C 308 1555 1555 2.34 LINK MG MG C 204 O HOH C 308 1555 1555 2.49 LINK MG MG C 204 O HOH C 322 1555 1555 2.94 LINK MG MG C 204 O HOH C 411 1555 1555 2.59 CISPEP 1 ALA A 11 PRO A 12 0 4.66 CISPEP 2 ALA B 11 PRO B 12 0 3.14 CISPEP 3 ALA C 11 PRO C 12 0 5.48 SITE 1 AC1 18 LYS A 29 ARG A 43 TYR A 55 ASP A 97 SITE 2 AC1 18 ASP A 102 LYS A 104 TYR A 141 LYS A 142 SITE 3 AC1 18 ARG A 148 MG A 202 MG A 203 MG A 204 SITE 4 AC1 18 HOH A 315 HOH A 324 HOH A 325 HOH A 346 SITE 5 AC1 18 HOH A 364 HOH A 387 SITE 1 AC2 6 ASP A 97 ASP A 102 LYS A 142 DPO A 201 SITE 2 AC2 6 HOH A 335 HOH A 387 SITE 1 AC3 4 ASP A 70 DPO A 201 MG A 204 HOH A 352 SITE 1 AC4 5 GLU A 20 LYS A 29 DPO A 201 MG A 203 SITE 2 AC4 5 HOH A 446 SITE 1 AC5 17 LYS B 29 ARG B 43 TYR B 55 ASP B 97 SITE 2 AC5 17 ASP B 102 LYS B 104 TYR B 141 LYS B 142 SITE 3 AC5 17 ARG B 148 MG B 202 MG B 203 MG B 204 SITE 4 AC5 17 HOH B 331 HOH B 352 HOH B 372 HOH B 393 SITE 5 AC5 17 HOH B 402 SITE 1 AC6 6 ASP B 97 ASP B 102 LYS B 142 DPO B 201 SITE 2 AC6 6 HOH B 343 HOH B 372 SITE 1 AC7 7 ASP B 65 ASP B 70 DPO B 201 MG B 204 SITE 2 AC7 7 HOH B 302 HOH B 310 HOH B 319 SITE 1 AC8 8 TYR B 55 ASP B 70 DPO B 201 MG B 203 SITE 2 AC8 8 HOH B 310 HOH B 313 HOH B 435 HOH B 453 SITE 1 AC9 17 LYS C 29 ARG C 43 TYR C 55 ASP C 97 SITE 2 AC9 17 ASP C 102 LYS C 104 TYR C 141 LYS C 142 SITE 3 AC9 17 ARG C 148 MG C 202 MG C 203 MG C 204 SITE 4 AC9 17 HOH C 336 HOH C 362 HOH C 384 HOH C 385 SITE 5 AC9 17 HOH C 386 SITE 1 AD1 6 ASP C 97 ASP C 102 LYS C 142 DPO C 201 SITE 2 AD1 6 HOH C 354 HOH C 386 SITE 1 AD2 6 ASP C 65 ASP C 70 DPO C 201 MG C 204 SITE 2 AD2 6 HOH C 308 HOH C 323 SITE 1 AD3 7 TYR C 55 ASP C 70 DPO C 201 MG C 203 SITE 2 AD3 7 HOH C 308 HOH C 322 HOH C 411 CRYST1 116.755 116.755 109.704 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009115 0.00000