HEADER STRUCTURAL PROTEIN 22-DEC-17 6FDD TITLE CRYSTAL STRUCTURE OF THE HHD2 DOMAIN OF WHIRLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: WHIRLIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: WHIRLIN DOMAIN HHD2 RESIDUES 420-499; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: WHRN, DFNB31, KIAA1526; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS USHER SYNDROME, SCAFFOLD PROTEIN, HEARING, DEAFNESS, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.DELHOMMEL,F.CORDIER,F.SAUL,A.HAOUZ,N.WOLFF REVDAT 2 31-OCT-18 6FDD 1 JRNL REVDAT 1 08-AUG-18 6FDD 0 JRNL AUTH F.DELHOMMEL,F.CORDIER,F.SAUL,L.CHATAIGNER,A.HAOUZ,N.WOLFF JRNL TITL STRUCTURAL PLASTICITY OF THE HHD2 DOMAIN OF WHIRLIN. JRNL REF FEBS J. V. 285 3738 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30053338 JRNL DOI 10.1111/FEBS.14614 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2697 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3948 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3219 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3750 REMARK 3 BIN R VALUE (WORKING SET) : 0.3195 REMARK 3 BIN FREE R VALUE : 0.3697 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 198 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3647 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 602 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.05040 REMARK 3 B22 (A**2) : 1.91080 REMARK 3 B33 (A**2) : 1.13960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.89120 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.121 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.108 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.112 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.104 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3791 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5131 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1381 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 89 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 564 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3791 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 496 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5000 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.83 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.67 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54049 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 49.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, PARROT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 1.26M CACODYLATE REMARK 280 0.7M, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 415 REMARK 465 ALA A 416 REMARK 465 MSE A 417 REMARK 465 GLY A 418 REMARK 465 SER A 419 REMARK 465 GLY A 420 REMARK 465 ASN A 421 REMARK 465 GLN A 422 REMARK 465 THR A 423 REMARK 465 GLY B 415 REMARK 465 ALA B 416 REMARK 465 MSE B 417 REMARK 465 GLY B 418 REMARK 465 SER B 419 REMARK 465 GLY B 420 REMARK 465 ASN B 421 REMARK 465 GLN B 422 REMARK 465 THR B 423 REMARK 465 GLY C 415 REMARK 465 ALA C 416 REMARK 465 MSE C 417 REMARK 465 GLY C 418 REMARK 465 SER C 419 REMARK 465 GLY C 420 REMARK 465 ASN C 421 REMARK 465 GLN C 422 REMARK 465 GLY D 415 REMARK 465 ALA D 416 REMARK 465 MSE D 417 REMARK 465 GLY D 418 REMARK 465 SER D 419 REMARK 465 GLY D 420 REMARK 465 ASN D 421 REMARK 465 GLN D 422 REMARK 465 THR D 423 REMARK 465 GLY E 415 REMARK 465 ALA E 416 REMARK 465 MSE E 417 REMARK 465 GLY E 418 REMARK 465 SER E 419 REMARK 465 GLY E 420 REMARK 465 ASN E 421 REMARK 465 GLN E 422 REMARK 465 THR E 423 REMARK 465 GLY F 415 REMARK 465 ALA F 416 REMARK 465 MSE F 417 REMARK 465 GLY F 418 REMARK 465 SER F 419 REMARK 465 GLY F 420 REMARK 465 ASN F 421 REMARK 465 GLN F 422 REMARK 465 THR F 423 REMARK 465 ARG F 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 424 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 426 CG CD1 CD2 REMARK 470 ASP A 428 CG OD1 OD2 REMARK 470 ASP A 429 CG OD1 OD2 REMARK 470 ARG A 499 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 424 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 426 CG CD1 CD2 REMARK 470 THR C 423 OG1 CG2 REMARK 470 ARG C 424 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 429 CG OD1 OD2 REMARK 470 ARG C 499 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 424 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 426 CG CD1 CD2 REMARK 470 ARG D 499 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 424 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 499 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 426 CG CD1 CD2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 707 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH C 589 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH E 704 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH F 712 DISTANCE = 5.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FDE RELATED DB: PDB REMARK 900 WHIRLIN DOMAIN HHD2 3-HELIX CONFORMATION. DBREF 6FDD A 420 499 UNP Q80VW5 WHRN_MOUSE 420 499 DBREF 6FDD B 420 499 UNP Q80VW5 WHRN_MOUSE 420 499 DBREF 6FDD C 420 499 UNP Q80VW5 WHRN_MOUSE 420 499 DBREF 6FDD D 420 499 UNP Q80VW5 WHRN_MOUSE 420 499 DBREF 6FDD E 420 499 UNP Q80VW5 WHRN_MOUSE 420 499 DBREF 6FDD F 420 499 UNP Q80VW5 WHRN_MOUSE 420 499 SEQADV 6FDD GLY A 415 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD ALA A 416 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD MSE A 417 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY A 418 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD SER A 419 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY B 415 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD ALA B 416 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD MSE B 417 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY B 418 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD SER B 419 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY C 415 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD ALA C 416 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD MSE C 417 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY C 418 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD SER C 419 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY D 415 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD ALA D 416 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD MSE D 417 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY D 418 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD SER D 419 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY E 415 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD ALA E 416 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD MSE E 417 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY E 418 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD SER E 419 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY F 415 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD ALA F 416 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD MSE F 417 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD GLY F 418 UNP Q80VW5 EXPRESSION TAG SEQADV 6FDD SER F 419 UNP Q80VW5 EXPRESSION TAG SEQRES 1 A 85 GLY ALA MSE GLY SER GLY ASN GLN THR ARG ALA LEU LEU SEQRES 2 A 85 ASP ASP GLN ALA ARG HIS LEU LEU THR GLU GLN GLU ARG SEQRES 3 A 85 ALA THR MSE MSE TYR TYR LEU ALA GLN TYR ARG GLY GLY SEQRES 4 A 85 THR ILE SER VAL GLU ALA MSE VAL MSE ALA LEU PHE GLU SEQRES 5 A 85 LEU LEU ASN THR HIS ALA LYS PHE SER LEU LEU SER GLU SEQRES 6 A 85 VAL ARG SER ILE ILE SER PRO GLN ASP LEU ASP ARG PHE SEQRES 7 A 85 ASP HIS LEU VAL LEU ARG ARG SEQRES 1 B 85 GLY ALA MSE GLY SER GLY ASN GLN THR ARG ALA LEU LEU SEQRES 2 B 85 ASP ASP GLN ALA ARG HIS LEU LEU THR GLU GLN GLU ARG SEQRES 3 B 85 ALA THR MSE MSE TYR TYR LEU ALA GLN TYR ARG GLY GLY SEQRES 4 B 85 THR ILE SER VAL GLU ALA MSE VAL MSE ALA LEU PHE GLU SEQRES 5 B 85 LEU LEU ASN THR HIS ALA LYS PHE SER LEU LEU SER GLU SEQRES 6 B 85 VAL ARG SER ILE ILE SER PRO GLN ASP LEU ASP ARG PHE SEQRES 7 B 85 ASP HIS LEU VAL LEU ARG ARG SEQRES 1 C 85 GLY ALA MSE GLY SER GLY ASN GLN THR ARG ALA LEU LEU SEQRES 2 C 85 ASP ASP GLN ALA ARG HIS LEU LEU THR GLU GLN GLU ARG SEQRES 3 C 85 ALA THR MSE MSE TYR TYR LEU ALA GLN TYR ARG GLY GLY SEQRES 4 C 85 THR ILE SER VAL GLU ALA MSE VAL MSE ALA LEU PHE GLU SEQRES 5 C 85 LEU LEU ASN THR HIS ALA LYS PHE SER LEU LEU SER GLU SEQRES 6 C 85 VAL ARG SER ILE ILE SER PRO GLN ASP LEU ASP ARG PHE SEQRES 7 C 85 ASP HIS LEU VAL LEU ARG ARG SEQRES 1 D 85 GLY ALA MSE GLY SER GLY ASN GLN THR ARG ALA LEU LEU SEQRES 2 D 85 ASP ASP GLN ALA ARG HIS LEU LEU THR GLU GLN GLU ARG SEQRES 3 D 85 ALA THR MSE MSE TYR TYR LEU ALA GLN TYR ARG GLY GLY SEQRES 4 D 85 THR ILE SER VAL GLU ALA MSE VAL MSE ALA LEU PHE GLU SEQRES 5 D 85 LEU LEU ASN THR HIS ALA LYS PHE SER LEU LEU SER GLU SEQRES 6 D 85 VAL ARG SER ILE ILE SER PRO GLN ASP LEU ASP ARG PHE SEQRES 7 D 85 ASP HIS LEU VAL LEU ARG ARG SEQRES 1 E 85 GLY ALA MSE GLY SER GLY ASN GLN THR ARG ALA LEU LEU SEQRES 2 E 85 ASP ASP GLN ALA ARG HIS LEU LEU THR GLU GLN GLU ARG SEQRES 3 E 85 ALA THR MSE MSE TYR TYR LEU ALA GLN TYR ARG GLY GLY SEQRES 4 E 85 THR ILE SER VAL GLU ALA MSE VAL MSE ALA LEU PHE GLU SEQRES 5 E 85 LEU LEU ASN THR HIS ALA LYS PHE SER LEU LEU SER GLU SEQRES 6 E 85 VAL ARG SER ILE ILE SER PRO GLN ASP LEU ASP ARG PHE SEQRES 7 E 85 ASP HIS LEU VAL LEU ARG ARG SEQRES 1 F 85 GLY ALA MSE GLY SER GLY ASN GLN THR ARG ALA LEU LEU SEQRES 2 F 85 ASP ASP GLN ALA ARG HIS LEU LEU THR GLU GLN GLU ARG SEQRES 3 F 85 ALA THR MSE MSE TYR TYR LEU ALA GLN TYR ARG GLY GLY SEQRES 4 F 85 THR ILE SER VAL GLU ALA MSE VAL MSE ALA LEU PHE GLU SEQRES 5 F 85 LEU LEU ASN THR HIS ALA LYS PHE SER LEU LEU SER GLU SEQRES 6 F 85 VAL ARG SER ILE ILE SER PRO GLN ASP LEU ASP ARG PHE SEQRES 7 F 85 ASP HIS LEU VAL LEU ARG ARG MODRES 6FDD MSE A 443 MET MODIFIED RESIDUE MODRES 6FDD MSE A 444 MET MODIFIED RESIDUE MODRES 6FDD MSE A 460 MET MODIFIED RESIDUE MODRES 6FDD MSE A 462 MET MODIFIED RESIDUE MODRES 6FDD MSE B 443 MET MODIFIED RESIDUE MODRES 6FDD MSE B 444 MET MODIFIED RESIDUE MODRES 6FDD MSE B 460 MET MODIFIED RESIDUE MODRES 6FDD MSE B 462 MET MODIFIED RESIDUE MODRES 6FDD MSE C 443 MET MODIFIED RESIDUE MODRES 6FDD MSE C 444 MET MODIFIED RESIDUE MODRES 6FDD MSE C 460 MET MODIFIED RESIDUE MODRES 6FDD MSE C 462 MET MODIFIED RESIDUE MODRES 6FDD MSE D 443 MET MODIFIED RESIDUE MODRES 6FDD MSE D 444 MET MODIFIED RESIDUE MODRES 6FDD MSE D 460 MET MODIFIED RESIDUE MODRES 6FDD MSE D 462 MET MODIFIED RESIDUE MODRES 6FDD MSE E 443 MET MODIFIED RESIDUE MODRES 6FDD MSE E 444 MET MODIFIED RESIDUE MODRES 6FDD MSE E 460 MET MODIFIED RESIDUE MODRES 6FDD MSE E 462 MET MODIFIED RESIDUE MODRES 6FDD MSE F 443 MET MODIFIED RESIDUE MODRES 6FDD MSE F 444 MET MODIFIED RESIDUE MODRES 6FDD MSE F 460 MET MODIFIED RESIDUE MODRES 6FDD MSE F 462 MET MODIFIED RESIDUE HET MSE A 443 8 HET MSE A 444 8 HET MSE A 460 13 HET MSE A 462 8 HET MSE B 443 8 HET MSE B 444 8 HET MSE B 460 13 HET MSE B 462 8 HET MSE C 443 8 HET MSE C 444 8 HET MSE C 460 13 HET MSE C 462 8 HET MSE D 443 8 HET MSE D 444 8 HET MSE D 460 13 HET MSE D 462 8 HET MSE E 443 8 HET MSE E 444 8 HET MSE E 460 13 HET MSE E 462 8 HET MSE F 443 8 HET MSE F 444 8 HET MSE F 460 13 HET MSE F 462 8 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 D 501 5 HET SO4 E 501 5 HET SO4 F 501 5 HET SO4 F 502 5 HET SO4 F 503 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 7 SO4 7(O4 S 2-) FORMUL 14 HOH *602(H2 O) HELIX 1 AA1 ARG A 424 LEU A 435 1 12 HELIX 2 AA2 THR A 436 GLY A 452 1 17 HELIX 3 AA3 SER A 456 LEU A 468 1 13 HELIX 4 AA4 THR A 470 SER A 475 1 6 HELIX 5 AA5 SER A 475 SER A 482 1 8 HELIX 6 AA6 ILE A 483 ILE A 484 5 2 HELIX 7 AA7 SER A 485 GLN A 487 5 3 HELIX 8 AA8 ASP A 488 VAL A 496 1 9 HELIX 9 AA9 ALA B 425 HIS B 433 1 9 HELIX 10 AB1 THR B 436 GLY B 452 1 17 HELIX 11 AB2 SER B 456 LEU B 468 1 13 HELIX 12 AB3 THR B 470 SER B 475 1 6 HELIX 13 AB4 SER B 475 SER B 482 1 8 HELIX 14 AB5 ILE B 483 ILE B 484 5 2 HELIX 15 AB6 SER B 485 GLN B 487 5 3 HELIX 16 AB7 ASP B 488 VAL B 496 1 9 HELIX 17 AB8 ARG C 424 LEU C 435 1 12 HELIX 18 AB9 THR C 436 GLY C 452 1 17 HELIX 19 AC1 SER C 456 LEU C 468 1 13 HELIX 20 AC2 THR C 470 SER C 475 1 6 HELIX 21 AC3 SER C 475 SER C 482 1 8 HELIX 22 AC4 ILE C 483 ILE C 484 5 2 HELIX 23 AC5 SER C 485 GLN C 487 5 3 HELIX 24 AC6 ASP C 488 VAL C 496 1 9 HELIX 25 AC7 ALA D 425 LEU D 435 1 11 HELIX 26 AC8 THR D 436 GLY D 452 1 17 HELIX 27 AC9 SER D 456 LEU D 468 1 13 HELIX 28 AD1 THR D 470 SER D 475 1 6 HELIX 29 AD2 SER D 475 SER D 482 1 8 HELIX 30 AD3 ILE D 483 ILE D 484 5 2 HELIX 31 AD4 SER D 485 GLN D 487 5 3 HELIX 32 AD5 ASP D 488 VAL D 496 1 9 HELIX 33 AD6 ALA E 425 LEU E 435 1 11 HELIX 34 AD7 THR E 436 GLY E 452 1 17 HELIX 35 AD8 SER E 456 LEU E 468 1 13 HELIX 36 AD9 THR E 470 SER E 475 1 6 HELIX 37 AE1 SER E 475 SER E 482 1 8 HELIX 38 AE2 ILE E 483 ILE E 484 5 2 HELIX 39 AE3 SER E 485 GLN E 487 5 3 HELIX 40 AE4 ASP E 488 VAL E 496 1 9 HELIX 41 AE5 LEU F 426 ARG F 432 1 7 HELIX 42 AE6 THR F 436 GLY F 452 1 17 HELIX 43 AE7 SER F 456 LEU F 468 1 13 HELIX 44 AE8 THR F 470 SER F 475 1 6 HELIX 45 AE9 SER F 475 SER F 482 1 8 HELIX 46 AF1 ILE F 483 ILE F 484 5 2 HELIX 47 AF2 SER F 485 GLN F 487 5 3 HELIX 48 AF3 ASP F 488 VAL F 496 1 9 LINK C THR A 442 N MSE A 443 1555 1555 1.34 LINK C MSE A 443 N MSE A 444 1555 1555 1.35 LINK C MSE A 444 N TYR A 445 1555 1555 1.35 LINK C ALA A 459 N MSE A 460 1555 1555 1.35 LINK C MSE A 460 N VAL A 461 1555 1555 1.35 LINK C VAL A 461 N MSE A 462 1555 1555 1.34 LINK C MSE A 462 N ALA A 463 1555 1555 1.34 LINK C THR B 442 N MSE B 443 1555 1555 1.33 LINK C MSE B 443 N MSE B 444 1555 1555 1.35 LINK C MSE B 444 N TYR B 445 1555 1555 1.34 LINK C ALA B 459 N MSE B 460 1555 1555 1.36 LINK C MSE B 460 N VAL B 461 1555 1555 1.34 LINK C VAL B 461 N MSE B 462 1555 1555 1.34 LINK C MSE B 462 N ALA B 463 1555 1555 1.35 LINK C THR C 442 N MSE C 443 1555 1555 1.34 LINK C MSE C 443 N MSE C 444 1555 1555 1.34 LINK C MSE C 444 N TYR C 445 1555 1555 1.35 LINK C ALA C 459 N MSE C 460 1555 1555 1.37 LINK C MSE C 460 N VAL C 461 1555 1555 1.34 LINK C VAL C 461 N MSE C 462 1555 1555 1.35 LINK C MSE C 462 N ALA C 463 1555 1555 1.35 LINK C THR D 442 N MSE D 443 1555 1555 1.34 LINK C MSE D 443 N MSE D 444 1555 1555 1.35 LINK C MSE D 444 N TYR D 445 1555 1555 1.35 LINK C ALA D 459 N MSE D 460 1555 1555 1.35 LINK C MSE D 460 N VAL D 461 1555 1555 1.35 LINK C VAL D 461 N MSE D 462 1555 1555 1.34 LINK C MSE D 462 N ALA D 463 1555 1555 1.34 LINK C THR E 442 N MSE E 443 1555 1555 1.34 LINK C MSE E 443 N MSE E 444 1555 1555 1.34 LINK C MSE E 444 N TYR E 445 1555 1555 1.34 LINK C ALA E 459 N MSE E 460 1555 1555 1.37 LINK C MSE E 460 N VAL E 461 1555 1555 1.35 LINK C VAL E 461 N MSE E 462 1555 1555 1.35 LINK C MSE E 462 N ALA E 463 1555 1555 1.34 LINK C THR F 442 N MSE F 443 1555 1555 1.33 LINK C MSE F 443 N MSE F 444 1555 1555 1.35 LINK C MSE F 444 N TYR F 445 1555 1555 1.34 LINK C ALA F 459 N MSE F 460 1555 1555 1.36 LINK C MSE F 460 N VAL F 461 1555 1555 1.34 LINK C VAL F 461 N MSE F 462 1555 1555 1.35 LINK C MSE F 462 N ALA F 463 1555 1555 1.34 SITE 1 AC1 6 SER B 475 ARG B 499 HOH B 603 HOH B 623 SITE 2 AC1 6 THR E 470 HIS E 471 SITE 1 AC2 6 THR B 470 HIS B 471 HOH B 616 HOH B 622 SITE 2 AC2 6 HOH B 655 HOH B 665 SITE 1 AC3 5 LEU A 435 THR A 436 GLU A 437 HIS D 471 SITE 2 AC3 5 HOH D 626 SITE 1 AC4 3 ARG B 498 THR E 436 GLU E 437 SITE 1 AC5 4 THR C 436 GLU C 437 ARG F 498 HOH F 645 SITE 1 AC6 6 THR C 470 HIS C 471 SER F 475 ARG F 499 SITE 2 AC6 6 HOH F 605 HOH F 629 SITE 1 AC7 5 THR F 470 HIS F 471 HOH F 624 HOH F 653 SITE 2 AC7 5 HOH F 657 CRYST1 118.580 74.910 63.840 90.00 106.38 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008433 0.000000 0.002479 0.00000 SCALE2 0.000000 0.013349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016327 0.00000