HEADER MEMBRANE PROTEIN 25-SEP-17 6EK8 TITLE YAXB FROM YERSINIA ENTEROCOLITICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: YAXB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: YE1985; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS PATHOGENS, PORE FORMING TOXINS, ALPHA-HELICAL, ADVENTITIOUS MEMBRANE KEYWDS 2 PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.BRAEUNING,M.GROLL REVDAT 2 17-JAN-24 6EK8 1 REMARK REVDAT 1 16-MAY-18 6EK8 0 JRNL AUTH B.BRAUNING,E.BERTOSIN,F.PRAETORIUS,C.IHLING,A.SCHATT, JRNL AUTH 2 A.ADLER,K.RICHTER,A.SINZ,H.DIETZ,M.GROLL JRNL TITL STRUCTURE AND MECHANISM OF THE TWO-COMPONENT ALPHA-HELICAL JRNL TITL 2 PORE-FORMING TOXIN YAXAB. JRNL REF NAT COMMUN V. 9 1806 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29728606 JRNL DOI 10.1038/S41467-018-04139-2 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 5351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.326 REMARK 3 R VALUE (WORKING SET) : 0.326 REMARK 3 FREE R VALUE : 0.339 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 282 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.4830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 196.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.23000 REMARK 3 B22 (A**2) : 6.23000 REMARK 3 B33 (A**2) : -20.20000 REMARK 3 B12 (A**2) : 3.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.847 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.904 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 155.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2016 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1995 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2710 ; 0.904 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4646 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 4.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;39.936 ;26.237 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;17.341 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.518 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2147 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 343 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 992 ; 4.248 ;16.217 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 991 ; 4.249 ;16.218 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1233 ; 5.714 ;24.315 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1234 ; 5.713 ;24.313 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1024 ; 3.989 ;16.807 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1025 ; 3.987 ;16.804 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1478 ; 5.987 ;25.032 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2458 ; 8.348 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2459 ; 8.347 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4011 ; 1.740 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3997 ;78.001 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 343 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9682 -43.3453 12.9532 REMARK 3 T TENSOR REMARK 3 T11: 0.2483 T22: 0.2365 REMARK 3 T33: 0.5704 T12: 0.1377 REMARK 3 T13: -0.0195 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 2.4129 L22: 1.3647 REMARK 3 L33: 0.1944 L12: -1.3972 REMARK 3 L13: -0.5031 L23: 0.2915 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: -0.0748 S13: -0.4880 REMARK 3 S21: -0.1003 S22: -0.0419 S23: 0.2381 REMARK 3 S31: -0.1303 S32: -0.0028 S33: 0.0295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5633 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EK4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M NA/K-PHOSPHATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.55333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.83000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.27667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 141.38333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.10667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.55333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.27667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.83000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 141.38333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 PHE A 7 REMARK 465 PRO A 8 REMARK 465 HIS A 9 REMARK 465 LYS A 36 REMARK 465 THR A 37 REMARK 465 THR A 38 REMARK 465 GLY A 39 REMARK 465 VAL A 40 REMARK 465 GLU A 41 REMARK 465 VAL A 42 REMARK 465 LEU A 43 REMARK 465 GLN A 44 REMARK 465 LEU A 91 REMARK 465 ILE A 92 REMARK 465 SER A 93 REMARK 465 GLN A 94 REMARK 465 ASP A 95 REMARK 465 ILE A 96 REMARK 465 ASP A 97 REMARK 465 GLU A 98 REMARK 465 GLU A 99 REMARK 465 SER A 100 REMARK 465 LYS A 101 REMARK 465 SER A 102 REMARK 465 GLU A 103 REMARK 465 MET A 104 REMARK 465 ARG A 105 REMARK 465 LYS A 106 REMARK 465 GLU A 107 REMARK 465 ARG A 108 REMARK 465 LEU A 188 REMARK 465 ASP A 189 REMARK 465 VAL A 190 REMARK 465 ILE A 191 REMARK 465 ARG A 192 REMARK 465 GLU A 193 REMARK 465 HIS A 194 REMARK 465 ASN A 195 REMARK 465 LEU A 196 REMARK 465 VAL A 197 REMARK 465 ASP A 198 REMARK 465 ALA A 199 REMARK 465 PHE A 200 REMARK 465 LYS A 201 REMARK 465 ASP A 202 REMARK 465 LEU A 203 REMARK 465 ILE A 204 REMARK 465 PRO A 205 REMARK 465 THR A 206 REMARK 465 GLY A 207 REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 LEU A 210 REMARK 465 SER A 211 REMARK 465 GLU A 212 REMARK 465 LEU A 213 REMARK 465 ASP A 214 REMARK 465 LEU A 215 REMARK 465 ALA A 216 REMARK 465 LYS A 217 REMARK 465 PRO A 218 REMARK 465 GLU A 219 REMARK 465 ILE A 220 REMARK 465 GLU A 221 REMARK 465 LEU A 222 REMARK 465 LEU A 223 REMARK 465 LYS A 224 REMARK 465 GLN A 225 REMARK 465 SER A 226 REMARK 465 LEU A 227 REMARK 465 GLU A 228 REMARK 465 ILE A 229 REMARK 465 THR A 230 REMARK 465 LYS A 231 REMARK 465 LYS A 232 REMARK 465 LEU A 233 REMARK 465 LEU A 234 REMARK 465 GLY A 235 REMARK 465 GLN A 236 REMARK 465 PHE A 237 REMARK 465 SER A 238 REMARK 465 GLU A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 LYS A 242 REMARK 465 TYR A 243 REMARK 465 ILE A 244 REMARK 465 ASP A 245 REMARK 465 ILE A 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 292 OG SER A 292 10445 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 34 -146.73 -123.71 REMARK 500 GLU A 147 -13.88 93.44 REMARK 500 GLN A 316 -151.05 61.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EK4 RELATED DB: PDB REMARK 900 PAXB FROM P. LUMINESCENS DBREF 6EK8 A 2 344 UNP A1JM52 A1JM52_YERE8 2 344 SEQADV 6EK8 GLY A 1 UNP A1JM52 EXPRESSION TAG SEQRES 1 A 344 GLY ALA GLU ILE SER THR PHE PRO HIS SER GLY LEU SER SEQRES 2 A 344 TYR PRO ASP ILE ASN PHE LYS ILE PHE SER GLN GLY VAL SEQRES 3 A 344 LYS ASN ILE SER HIS LEU ALA GLN PHE LYS THR THR GLY SEQRES 4 A 344 VAL GLU VAL LEU GLN GLU LYS ALA LEU ARG VAL SER LEU SEQRES 5 A 344 TYR SER GLN ARG LEU ASP VAL ILE VAL ARG GLU SER LEU SEQRES 6 A 344 SER SER LEU GLN VAL LYS LEU GLU ASN THR LEU ALA LEU SEQRES 7 A 344 THR TYR PHE THR THR LEU GLU GLU ILE ASP GLU ALA LEU SEQRES 8 A 344 ILE SER GLN ASP ILE ASP GLU GLU SER LYS SER GLU MET SEQRES 9 A 344 ARG LYS GLU ARG ILE ASN ILE ILE LYS ASN LEU SER ASN SEQRES 10 A 344 ASP ILE THR GLN LEU LYS GLN LEU PHE ILE GLU LYS THR SEQRES 11 A 344 GLU LEU LEU ASP LYS SER SER SER ASP LEU HIS ASN VAL SEQRES 12 A 344 VAL ILE ILE GLU GLY THR ASP LYS VAL LEU GLN ALA GLU SEQRES 13 A 344 GLN LEU ARG GLN LYS GLN LEU THR GLU ASP ILE ALA THR SEQRES 14 A 344 LYS GLU LEU GLU ARG LYS GLU ILE GLU LYS LYS ARG ASP SEQRES 15 A 344 LYS ILE ILE GLU ALA LEU ASP VAL ILE ARG GLU HIS ASN SEQRES 16 A 344 LEU VAL ASP ALA PHE LYS ASP LEU ILE PRO THR GLY GLU SEQRES 17 A 344 ASN LEU SER GLU LEU ASP LEU ALA LYS PRO GLU ILE GLU SEQRES 18 A 344 LEU LEU LYS GLN SER LEU GLU ILE THR LYS LYS LEU LEU SEQRES 19 A 344 GLY GLN PHE SER GLU GLY LEU LYS TYR ILE ASP LEU THR SEQRES 20 A 344 ASP ALA ARG LYS LYS LEU ASP ASN GLN ILE ASP THR ALA SEQRES 21 A 344 SER THR ARG LEU THR GLU LEU ASN ARG GLN LEU GLU GLN SEQRES 22 A 344 SER GLU LYS LEU ILE ALA GLY VAL ASN ALA VAL ILE LYS SEQRES 23 A 344 ILE ASP GLN GLU LYS SER ALA VAL VAL VAL GLU ALA GLU SEQRES 24 A 344 LYS LEU SER ARG ALA TRP HIS ILE PHE ILE HIS GLU ILE SEQRES 25 A 344 THR ALA LEU GLN GLY THR SER LEU ASN GLU VAL GLU LEU SEQRES 26 A 344 SER LYS PRO LEU ILE LYS GLN GLN ILE TYR LEU GLU SER SEQRES 27 A 344 LEU ILE LYS GLN LEU ILE HELIX 1 AA1 ASN A 18 LEU A 32 1 15 HELIX 2 AA2 LEU A 48 ASP A 88 1 41 HELIX 3 AA3 ASN A 110 VAL A 143 1 34 HELIX 4 AA4 THR A 149 GLU A 186 1 38 HELIX 5 AA5 THR A 247 ALA A 314 1 68 HELIX 6 AA6 ASN A 321 GLN A 342 1 22 CRYST1 111.700 111.700 169.660 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008953 0.005169 0.000000 0.00000 SCALE2 0.000000 0.010338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005894 0.00000