HEADER PROTEIN BINDING 06-SEP-17 6AWV TITLE ARA H 8.01 IN COMPLEX WITH EPICATECHIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARA H 8 ALLERGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARACHIS HYPOGAEA; SOURCE 3 ORGANISM_COMMON: PEANUT; SOURCE 4 ORGANISM_TAXID: 3818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PLANT PROTEIN, PEANUT, ALLERGEN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.R.OFFERMANN,M.PERDUE,J.MCBRIDE,B.K.HURLBURT,S.J.MALEKI,S.S.POTE, AUTHOR 2 M.CHRUSZCZ REVDAT 2 04-OCT-23 6AWV 1 LINK REVDAT 1 12-SEP-18 6AWV 0 JRNL AUTH L.R.OFFERMANN,J.YARBROUGH,J.MCBRIDE,B.K.HURLBURT,S.J.MALEKI, JRNL AUTH 2 S.S.POTE,M.CHRUSZCZ JRNL TITL STRUCTURE OF PR-10 ALLERGEN ARA H 8.01. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 820 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1052 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.84000 REMARK 3 B22 (A**2) : -3.31000 REMARK 3 B33 (A**2) : 1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.855 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3655 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4973 ; 1.784 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 3.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;32.553 ;26.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 593 ;13.132 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;15.953 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2747 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1865 ; 2.213 ; 4.399 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2326 ; 3.807 ; 6.587 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1790 ; 2.171 ; 4.735 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14598 ; 8.825 ;42.005 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 156 B 3 156 378 0.17 0.05 REMARK 3 2 A 2 157 C 2 157 396 0.20 0.05 REMARK 3 3 B 3 156 C 3 156 364 0.20 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5560 -3.9330 2.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.2577 REMARK 3 T33: 0.1451 T12: 0.0020 REMARK 3 T13: 0.1318 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 1.6757 L22: 1.6780 REMARK 3 L33: 1.7343 L12: 0.4856 REMARK 3 L13: -0.8522 L23: 0.4258 REMARK 3 S TENSOR REMARK 3 S11: 0.1110 S12: 0.0369 S13: -0.0056 REMARK 3 S21: 0.0634 S22: -0.2307 S23: 0.2311 REMARK 3 S31: 0.0503 S32: -0.2772 S33: 0.1198 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8790 4.2070 -1.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.1337 T22: 0.1413 REMARK 3 T33: 0.1361 T12: 0.0741 REMARK 3 T13: 0.1008 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.9223 L22: 3.5766 REMARK 3 L33: 4.2535 L12: 1.0207 REMARK 3 L13: -0.5232 L23: 0.7245 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: 0.1554 S13: 0.1562 REMARK 3 S21: -0.1715 S22: -0.0419 S23: -0.1807 REMARK 3 S31: -0.0571 S32: -0.2267 S33: -0.0966 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -27.1000 0.1150 10.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.4088 T22: 0.3787 REMARK 3 T33: 0.2231 T12: 0.0207 REMARK 3 T13: 0.1110 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 5.2017 L22: 7.9736 REMARK 3 L33: 2.3364 L12: 4.6997 REMARK 3 L13: -2.6058 L23: -2.5571 REMARK 3 S TENSOR REMARK 3 S11: 0.3637 S12: -0.0401 S13: 0.1005 REMARK 3 S21: -0.3470 S22: -0.4150 S23: 0.4768 REMARK 3 S31: 0.2615 S32: 0.0310 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3480 -23.7930 -17.3730 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.2325 REMARK 3 T33: 0.0609 T12: 0.0293 REMARK 3 T13: 0.0655 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 2.9579 L22: 3.3126 REMARK 3 L33: 2.7447 L12: 0.3259 REMARK 3 L13: -0.9636 L23: -1.2954 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: 0.3088 S13: -0.2429 REMARK 3 S21: -0.1382 S22: -0.2007 S23: -0.2431 REMARK 3 S31: -0.1146 S32: 0.1351 S33: 0.2219 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9040 -22.1170 -10.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.2159 T22: 0.2271 REMARK 3 T33: 0.1048 T12: 0.0074 REMARK 3 T13: 0.0390 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 0.9342 L22: 3.0664 REMARK 3 L33: 2.7458 L12: -0.7287 REMARK 3 L13: -1.5813 L23: 0.9397 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.1097 S13: -0.1274 REMARK 3 S21: -0.0759 S22: -0.1977 S23: 0.1284 REMARK 3 S31: -0.0398 S32: -0.1175 S33: 0.2042 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2610 -27.2790 -18.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.1632 T22: 0.2762 REMARK 3 T33: 0.1677 T12: -0.0147 REMARK 3 T13: -0.0061 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 9.0304 L22: 2.0000 REMARK 3 L33: 3.4360 L12: 1.5584 REMARK 3 L13: -5.1032 L23: -1.8064 REMARK 3 S TENSOR REMARK 3 S11: 0.1245 S12: 0.1917 S13: 0.1539 REMARK 3 S21: 0.0428 S22: -0.0559 S23: 0.1570 REMARK 3 S31: -0.1204 S32: -0.0667 S33: -0.0686 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 43 REMARK 3 ORIGIN FOR THE GROUP (A): -43.5580 -1.7010 12.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.0472 T22: 0.4340 REMARK 3 T33: 0.1502 T12: -0.0610 REMARK 3 T13: 0.0764 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 4.4419 L22: 3.2667 REMARK 3 L33: 4.6144 L12: -0.3302 REMARK 3 L13: -3.9551 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.7905 S13: -0.0881 REMARK 3 S21: -0.1206 S22: 0.0996 S23: 0.0677 REMARK 3 S31: -0.0428 S32: -0.8530 S33: -0.0842 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 44 C 133 REMARK 3 ORIGIN FOR THE GROUP (A): -49.8260 -3.4220 19.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.4645 REMARK 3 T33: 0.4151 T12: -0.0487 REMARK 3 T13: 0.2267 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 3.4941 L22: 3.5205 REMARK 3 L33: 2.1007 L12: -0.3967 REMARK 3 L13: -1.4714 L23: 0.1307 REMARK 3 S TENSOR REMARK 3 S11: -0.1301 S12: 0.5045 S13: -0.3450 REMARK 3 S21: 0.2856 S22: 0.1723 S23: 0.7820 REMARK 3 S31: 0.0295 S32: -0.6820 S33: -0.0423 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 134 C 157 REMARK 3 ORIGIN FOR THE GROUP (A): -37.9150 0.5930 11.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.4399 T22: 0.4557 REMARK 3 T33: 0.2780 T12: 0.0032 REMARK 3 T13: 0.0790 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.9927 L22: 2.4940 REMARK 3 L33: 2.7605 L12: -1.7759 REMARK 3 L13: -2.6088 L23: 2.4917 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: 0.0819 S13: -0.0686 REMARK 3 S21: 0.4674 S22: 0.0422 S23: 0.0039 REMARK 3 S31: 0.4156 S32: 0.0529 S33: -0.0058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6AWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000228707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : 0.45000 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4MAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 100 MM HEPES, PH 7.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.75950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.11600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.75950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.11600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 LEU B 132 CG CD1 CD2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 GLN B 156 CG CD OE1 NE2 REMARK 470 LYS C 24 CG CD CE NZ REMARK 470 ASP C 60 CG OD1 OD2 REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 LEU C 115 CG CD1 CD2 REMARK 470 GLU C 129 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 12 OE1 GLU B 147 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 96 146.11 -179.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 31 O REMARK 620 2 ILE B 34 O 76.5 REMARK 620 3 ASP B 35 O 146.9 70.4 REMARK 620 4 VAL B 37 O 85.5 79.3 87.4 REMARK 620 5 HOH B 303 O 75.4 78.3 98.4 153.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO C 31 O REMARK 620 2 ILE C 34 O 81.0 REMARK 620 3 ASP C 35 O 150.7 69.8 REMARK 620 4 VAL C 37 O 88.1 82.6 89.9 REMARK 620 5 HOH C 301 O 133.9 143.6 74.6 105.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 28E A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 28E B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 28E C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 28E C 203 DBREF 6AWV A 2 157 UNP Q6VT83 Q6VT83_ARAHY 2 157 DBREF 6AWV B 2 157 UNP Q6VT83 Q6VT83_ARAHY 2 157 DBREF 6AWV C 2 157 UNP Q6VT83 Q6VT83_ARAHY 2 157 SEQRES 1 A 156 GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR VAL SEQRES 2 A 156 PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA ASP SEQRES 3 A 156 SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER VAL SEQRES 4 A 156 GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE LYS SEQRES 5 A 156 LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE ILE SEQRES 6 A 156 LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR ALA SEQRES 7 A 156 TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO PRO SEQRES 8 A 156 THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL GLU SEQRES 9 A 156 GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU LYS SEQRES 10 A 156 TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU GLU SEQRES 11 A 156 LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE ARG SEQRES 12 A 156 ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN TYR SEQRES 1 B 156 GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR VAL SEQRES 2 B 156 PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA ASP SEQRES 3 B 156 SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER VAL SEQRES 4 B 156 GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE LYS SEQRES 5 B 156 LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE ILE SEQRES 6 B 156 LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR ALA SEQRES 7 B 156 TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO PRO SEQRES 8 B 156 THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL GLU SEQRES 9 B 156 GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU LYS SEQRES 10 B 156 TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU GLU SEQRES 11 B 156 LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE ARG SEQRES 12 B 156 ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN TYR SEQRES 1 C 156 GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR VAL SEQRES 2 C 156 PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA ASP SEQRES 3 C 156 SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER VAL SEQRES 4 C 156 GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE LYS SEQRES 5 C 156 LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE ILE SEQRES 6 C 156 LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR ALA SEQRES 7 C 156 TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO PRO SEQRES 8 C 156 THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL GLU SEQRES 9 C 156 GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU LYS SEQRES 10 C 156 TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU GLU SEQRES 11 C 156 LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE ARG SEQRES 12 C 156 ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN TYR HET 28E A 201 21 HET BEZ A 202 9 HET NA B 201 1 HET 28E B 202 21 HET NA C 201 1 HET 28E C 202 21 HET 28E C 203 21 HETNAM 28E (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,4-DIHYDRO-2H- HETNAM 2 28E CHROMENE-3,5,7-TRIOL HETNAM BEZ BENZOIC ACID HETNAM NA SODIUM ION HETSYN 28E EPICATECHIN FORMUL 4 28E 4(C15 H14 O6) FORMUL 5 BEZ C7 H6 O2 FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *27(H2 O) HELIX 1 AA1 PRO A 15 LYS A 24 1 10 HELIX 2 AA2 ASP A 25 ILE A 34 1 10 HELIX 3 AA3 GLU A 75 ASN A 77 5 3 HELIX 4 AA4 ASP A 128 ASN A 153 1 26 HELIX 5 AA5 PRO B 15 LYS B 24 1 10 HELIX 6 AA6 ASP B 25 ILE B 34 1 10 HELIX 7 AA7 GLU B 75 ASN B 77 5 3 HELIX 8 AA8 ASP B 128 ASN B 153 1 26 HELIX 9 AA9 PRO B 154 TYR B 157 5 4 HELIX 10 AB1 PRO C 15 LYS C 24 1 10 HELIX 11 AB2 ASP C 25 ILE C 34 1 10 HELIX 12 AB3 GLU C 75 ASN C 77 5 3 HELIX 13 AB4 ASP C 128 ASN C 153 1 26 HELIX 14 AB5 PRO C 154 TYR C 157 5 4 SHEET 1 AA1 7 VAL A 3 SER A 12 0 SHEET 2 AA1 7 SER A 111 THR A 121 -1 O GLY A 113 N ILE A 10 SHEET 3 AA1 7 ALA A 94 GLU A 105 -1 N LYS A 102 O LYS A 114 SHEET 4 AA1 7 ALA A 79 GLY A 87 -1 N TYR A 82 O PHE A 99 SHEET 5 AA1 7 GLU A 62 ASP A 74 -1 N LEU A 67 O GLY A 86 SHEET 6 AA1 7 ILE A 52 GLU A 59 -1 N GLU A 59 O GLU A 62 SHEET 7 AA1 7 VAL A 37 GLU A 44 -1 N GLU A 41 O LYS A 54 SHEET 1 AA2 7 PHE B 4 SER B 12 0 SHEET 2 AA2 7 SER B 111 THR B 121 -1 O GLY B 113 N ILE B 10 SHEET 3 AA2 7 ALA B 94 GLU B 105 -1 N GLU B 100 O THR B 116 SHEET 4 AA2 7 ALA B 79 GLY B 87 -1 N TYR B 82 O PHE B 99 SHEET 5 AA2 7 GLU B 62 ASP B 74 -1 N LEU B 67 O GLY B 86 SHEET 6 AA2 7 ILE B 52 GLU B 59 -1 N GLU B 59 O GLU B 62 SHEET 7 AA2 7 VAL B 37 GLU B 44 -1 N GLU B 41 O LYS B 54 SHEET 1 AA3 7 VAL C 3 SER C 12 0 SHEET 2 AA3 7 SER C 111 THR C 121 -1 O LEU C 115 N ASP C 8 SHEET 3 AA3 7 ALA C 94 GLU C 105 -1 N GLU C 100 O THR C 116 SHEET 4 AA3 7 ALA C 79 GLY C 87 -1 N TYR C 82 O PHE C 99 SHEET 5 AA3 7 GLU C 62 ASP C 74 -1 N LEU C 67 O GLY C 86 SHEET 6 AA3 7 ILE C 52 GLU C 59 -1 N GLU C 59 O GLU C 62 SHEET 7 AA3 7 VAL C 37 GLU C 44 -1 N GLU C 41 O LYS C 54 LINK O PRO B 31 NA NA B 201 1555 1555 2.35 LINK O ILE B 34 NA NA B 201 1555 1555 2.73 LINK O ASP B 35 NA NA B 201 1555 1555 2.89 LINK O VAL B 37 NA NA B 201 1555 1555 2.70 LINK NA NA B 201 O HOH B 303 1555 1555 2.97 LINK O PRO C 31 NA NA C 201 1555 1555 2.42 LINK O ILE C 34 NA NA C 201 1555 1555 2.67 LINK O ASP C 35 NA NA C 201 1555 1555 2.95 LINK O VAL C 37 NA NA C 201 1555 1555 2.54 LINK NA NA C 201 O HOH C 301 1555 1555 2.27 SITE 1 AC1 6 THR A 30 LEU A 55 HIS A 68 LYS A 138 SITE 2 AC1 6 LEU A 142 HOH A 303 SITE 1 AC2 1 PHE A 6 SITE 1 AC3 5 PRO B 31 ILE B 34 ASP B 35 VAL B 37 SITE 2 AC3 5 HOH B 303 SITE 1 AC4 6 THR B 30 ILE B 34 LEU B 55 ILE B 66 SITE 2 AC4 6 HIS B 68 LEU B 142 SITE 1 AC5 5 PRO C 31 ILE C 34 ASP C 35 VAL C 37 SITE 2 AC5 5 HOH C 301 SITE 1 AC6 6 ALA A 152 THR C 30 ILE C 34 LEU C 55 SITE 2 AC6 6 LYS C 138 LEU C 142 SITE 1 AC7 12 ASP C 8 GLU C 9 ILE C 10 MET C 23 SITE 2 AC7 12 TYR C 80 THR C 101 GLY C 113 LEU C 115 SITE 3 AC7 12 LYS C 136 GLY C 139 GLU C 140 LEU C 142 CRYST1 177.519 52.232 56.449 90.00 96.87 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005633 0.000000 0.000678 0.00000 SCALE2 0.000000 0.019145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017843 0.00000