HEADER FLAVOPROTEIN 05-JUN-18 6A08 TITLE THE CRYSTAL STRUCTURE OF MANDELATE OXIDASE WITH BENZOYL-FORMIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYMANDELATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_COMMON: NOCARDIA ORIENTALIS; SOURCE 4 ORGANISM_TAXID: 31958; SOURCE 5 GENE: HMO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FMN-DEPENDENT OXIDASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,K.H.LIN REVDAT 4 22-NOV-23 6A08 1 REMARK REVDAT 3 16-OCT-19 6A08 1 JRNL REVDAT 2 14-AUG-19 6A08 1 JRNL REVDAT 1 19-JUN-19 6A08 0 JRNL AUTH S.Y.LYU,K.H.LIN,H.W.YEH,Y.S.LI,C.M.HUANG,Y.L.WANG,H.W.SHIH, JRNL AUTH 2 N.S.HSU,C.J.WU,T.L.LI JRNL TITL THE FLAVIN MONONUCLEOTIDE COFACTOR IN ALPHA-HYDROXYACID JRNL TITL 2 OXIDASES EXERTS ITS ELECTROPHILIC/NUCLEOPHILIC DUALITY IN JRNL TITL 3 CONTROL OF THE SUBSTRATE-OXIDATION LEVEL. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 918 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31588923 JRNL DOI 10.1107/S2059798319011938 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.W.YEH,K.H.LIN,S.Y.LYU,Y.S.LI,C.M.HUANG,Y.L.WANG,H.W.SHIH, REMARK 1 AUTH 2 N.S.HSU,C.J.WU,T.L.LI REMARK 1 TITL BIOCHEMICAL AND STRUCTURAL EXPLORATIONS OF ALPHA-HYDROXYACID REMARK 1 TITL 2 OXIDASES REVEAL A FOUR-ELECTRON OXIDATIVE DECARBOXYLATION REMARK 1 TITL 3 REACTION. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 733 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31373572 REMARK 1 DOI 10.1107/S2059798319009574 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 75720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3483 - 3.7262 1.00 5717 155 0.1410 0.1445 REMARK 3 2 3.7262 - 2.9585 1.00 5511 149 0.1440 0.1768 REMARK 3 3 2.9585 - 2.5848 1.00 5487 150 0.1605 0.1787 REMARK 3 4 2.5848 - 2.3486 1.00 5441 147 0.1682 0.1928 REMARK 3 5 2.3486 - 2.1803 1.00 5442 147 0.1619 0.1753 REMARK 3 6 2.1803 - 2.0518 1.00 5403 147 0.1640 0.1921 REMARK 3 7 2.0518 - 1.9491 1.00 5403 147 0.1685 0.2012 REMARK 3 8 1.9491 - 1.8642 1.00 5378 146 0.1789 0.2071 REMARK 3 9 1.8642 - 1.7925 1.00 5398 146 0.1834 0.2203 REMARK 3 10 1.7925 - 1.7306 1.00 5370 146 0.1898 0.2181 REMARK 3 11 1.7306 - 1.6765 1.00 5351 145 0.1980 0.2260 REMARK 3 12 1.6765 - 1.6286 0.98 5236 142 0.2070 0.2290 REMARK 3 13 1.6286 - 1.5857 0.85 4544 124 0.2121 0.2397 REMARK 3 14 1.5857 - 1.5470 0.75 4039 109 0.2182 0.2498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2812 REMARK 3 ANGLE : 1.295 3854 REMARK 3 CHIRALITY : 0.060 438 REMARK 3 PLANARITY : 0.006 513 REMARK 3 DIHEDRAL : 13.592 1036 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.547 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3SGZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TASCIMATE, 0.1M BIS-TRIS PROPANE REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 68.95550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 68.95550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.88650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 68.95550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 68.95550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 55.88650 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 68.95550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 68.95550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 55.88650 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 68.95550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 68.95550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 55.88650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 68.95550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.95550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 55.88650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 68.95550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 68.95550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 55.88650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 68.95550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 68.95550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 55.88650 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 68.95550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 68.95550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.88650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 184 REMARK 465 GLY A 185 REMARK 465 THR A 186 REMARK 465 ALA A 187 REMARK 465 ALA A 188 REMARK 465 HIS A 189 REMARK 465 ARG A 190 REMARK 465 ARG A 191 REMARK 465 THR A 192 REMARK 465 GLN A 193 REMARK 465 GLY A 194 REMARK 465 VAL A 195 REMARK 465 SER A 196 REMARK 465 ALA A 197 REMARK 465 VAL A 198 REMARK 465 ALA A 199 REMARK 465 ASP A 200 REMARK 465 HIS A 201 REMARK 465 THR A 202 REMARK 465 ALA A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 123 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 42.95 -98.54 REMARK 500 ARG A 131 -75.69 4.09 REMARK 500 GLN A 256 -105.37 -108.31 REMARK 500 ALA A 316 24.03 -157.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 828 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 829 DISTANCE = 6.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 304 O REMARK 620 2 FMN A 402 O3P 109.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 173 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 173 A 404 DBREF 6A08 A 1 357 UNP O52792 HMO_AMYOR 1 357 SEQADV 6A08 MET A -19 UNP O52792 EXPRESSION TAG SEQADV 6A08 GLY A -18 UNP O52792 EXPRESSION TAG SEQADV 6A08 SER A -17 UNP O52792 EXPRESSION TAG SEQADV 6A08 SER A -16 UNP O52792 EXPRESSION TAG SEQADV 6A08 HIS A -15 UNP O52792 EXPRESSION TAG SEQADV 6A08 HIS A -14 UNP O52792 EXPRESSION TAG SEQADV 6A08 HIS A -13 UNP O52792 EXPRESSION TAG SEQADV 6A08 HIS A -12 UNP O52792 EXPRESSION TAG SEQADV 6A08 HIS A -11 UNP O52792 EXPRESSION TAG SEQADV 6A08 HIS A -10 UNP O52792 EXPRESSION TAG SEQADV 6A08 SER A -9 UNP O52792 EXPRESSION TAG SEQADV 6A08 SER A -8 UNP O52792 EXPRESSION TAG SEQADV 6A08 GLY A -7 UNP O52792 EXPRESSION TAG SEQADV 6A08 LEU A -6 UNP O52792 EXPRESSION TAG SEQADV 6A08 VAL A -5 UNP O52792 EXPRESSION TAG SEQADV 6A08 PRO A -4 UNP O52792 EXPRESSION TAG SEQADV 6A08 ARG A -3 UNP O52792 EXPRESSION TAG SEQADV 6A08 GLY A -2 UNP O52792 EXPRESSION TAG SEQADV 6A08 SER A -1 UNP O52792 EXPRESSION TAG SEQADV 6A08 HIS A 0 UNP O52792 EXPRESSION TAG SEQRES 1 A 377 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 377 LEU VAL PRO ARG GLY SER HIS MET THR TYR VAL SER LEU SEQRES 3 A 377 ALA ASP LEU GLU ARG ALA ALA ARG ASP VAL LEU PRO GLY SEQRES 4 A 377 GLU ILE PHE ASP PHE LEU ALA GLY GLY SER GLY THR GLU SEQRES 5 A 377 ALA SER LEU VAL ALA ASN ARG THR ALA LEU GLU ARG VAL SEQRES 6 A 377 PHE VAL ILE PRO ARG MET LEU ARG ASP LEU THR ASP VAL SEQRES 7 A 377 THR THR GLU ILE ASP ILE PHE GLY ARG ARG ALA ALA LEU SEQRES 8 A 377 PRO MET ALA VAL ALA PRO VAL ALA TYR GLN ARG LEU PHE SEQRES 9 A 377 HIS PRO GLU GLY GLU LEU ALA VAL ALA ARG ALA ALA ARG SEQRES 10 A 377 ASP ALA GLY VAL PRO TYR THR ILE CYS THR LEU SER SER SEQRES 11 A 377 VAL SER LEU GLU GLU ILE ALA ALA VAL GLY GLY ARG PRO SEQRES 12 A 377 TRP PHE GLN LEU TYR TRP LEU ARG ASP GLU LYS ARG SER SEQRES 13 A 377 LEU ASP LEU VAL ARG ARG ALA GLU ASP ALA GLY CYS GLU SEQRES 14 A 377 ALA ILE VAL PHE THR VAL ASP VAL PRO TRP MET GLY ARG SEQRES 15 A 377 ARG LEU ARG ASP MET ARG ASN GLY PHE ALA LEU PRO GLU SEQRES 16 A 377 TRP VAL THR ALA ALA ASN PHE ASP ALA GLY THR ALA ALA SEQRES 17 A 377 HIS ARG ARG THR GLN GLY VAL SER ALA VAL ALA ASP HIS SEQRES 18 A 377 THR ALA ARG GLU PHE ALA PRO ALA THR TRP GLU SER VAL SEQRES 19 A 377 GLU ALA VAL ARG ALA HIS THR ASP LEU PRO VAL VAL LEU SEQRES 20 A 377 LYS GLY ILE LEU ALA VAL GLU ASP ALA ARG ARG ALA VAL SEQRES 21 A 377 ASP ALA GLY ALA GLY GLY ILE VAL VAL SER ASN HIS GLY SEQRES 22 A 377 GLY ARG GLN LEU ASP GLY ALA VAL PRO GLY ILE GLU MET SEQRES 23 A 377 LEU GLY GLU ILE VAL ALA ALA VAL SER GLY GLY CYS GLU SEQRES 24 A 377 VAL LEU VAL ASP GLY GLY ILE ARG SER GLY GLY ASP VAL SEQRES 25 A 377 LEU LYS ALA THR ALA LEU GLY ALA SER ALA VAL LEU VAL SEQRES 26 A 377 GLY ARG PRO VAL MET TRP ALA LEU ALA ALA ALA GLY GLN SEQRES 27 A 377 ASP GLY VAL ARG GLN LEU LEU GLU LEU LEU ALA GLU GLU SEQRES 28 A 377 VAL ARG ASP ALA MET GLY LEU ALA GLY CYS GLU SER VAL SEQRES 29 A 377 GLY ALA ALA ARG ARG LEU ASN THR LYS LEU GLY VAL VAL HET MG A 401 1 HET FMN A 402 31 HET 173 A 403 11 HET 173 A 404 22 HETNAM MG MAGNESIUM ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM 173 BENZOYL-FORMIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN 173 OXO(PHENYL)ACETIC ACID FORMUL 2 MG MG 2+ FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 173 2(C8 H6 O3) FORMUL 6 HOH *328(H2 O) HELIX 1 AA1 SER A 5 LEU A 17 1 13 HELIX 2 AA2 PRO A 18 GLY A 27 1 10 HELIX 3 AA3 GLU A 32 ARG A 44 1 13 HELIX 4 AA4 TYR A 80 PHE A 84 5 5 HELIX 5 AA5 GLU A 87 GLY A 100 1 14 HELIX 6 AA6 SER A 112 VAL A 119 1 8 HELIX 7 AA7 ASP A 132 ALA A 146 1 15 HELIX 8 AA8 ARG A 163 GLY A 170 1 8 HELIX 9 AA9 THR A 210 THR A 221 1 12 HELIX 10 AB1 ALA A 232 ALA A 242 1 11 HELIX 11 AB2 ASN A 251 ARG A 255 5 5 HELIX 12 AB3 PRO A 262 SER A 275 1 14 HELIX 13 AB4 SER A 288 LEU A 298 1 11 HELIX 14 AB5 GLY A 306 ALA A 339 1 34 HELIX 15 AB6 SER A 343 ARG A 349 1 7 SHEET 1 AA1 2 VAL A 45 ILE A 48 0 SHEET 2 AA1 2 ASN A 351 LEU A 354 -1 O ASN A 351 N ILE A 48 SHEET 1 AA2 2 ILE A 62 ILE A 64 0 SHEET 2 AA2 2 ARG A 67 ALA A 69 -1 O ALA A 69 N ILE A 62 SHEET 1 AA3 8 MET A 73 VAL A 75 0 SHEET 2 AA3 8 ALA A 302 VAL A 305 1 O VAL A 303 N ALA A 74 SHEET 3 AA3 8 GLU A 279 VAL A 282 1 N VAL A 282 O LEU A 304 SHEET 4 AA3 8 GLY A 246 VAL A 249 1 N VAL A 249 O LEU A 281 SHEET 5 AA3 8 VAL A 225 ILE A 230 1 N LEU A 227 O VAL A 248 SHEET 6 AA3 8 ILE A 151 THR A 154 1 N ILE A 151 O VAL A 226 SHEET 7 AA3 8 TRP A 124 LEU A 127 1 N PHE A 125 O VAL A 152 SHEET 8 AA3 8 THR A 104 ILE A 105 1 N ILE A 105 O GLN A 126 LINK O LEU A 304 MG MG A 401 1555 1555 2.76 LINK MG MG A 401 O3P FMN A 402 1555 1555 2.70 SITE 1 AC1 5 GLY A 284 GLY A 285 ILE A 286 LEU A 304 SITE 2 AC1 5 FMN A 402 SITE 1 AC2 21 LEU A 25 ALA A 76 PRO A 77 VAL A 78 SITE 2 AC2 21 ALA A 79 GLN A 126 TYR A 128 THR A 154 SITE 3 AC2 21 LYS A 228 HIS A 252 GLY A 253 ARG A 255 SITE 4 AC2 21 ASP A 283 GLY A 285 ARG A 287 GLY A 306 SITE 5 AC2 21 ARG A 307 MG A 401 173 A 404 HOH A 575 SITE 6 AC2 21 HOH A 610 SITE 1 AC3 5 VAL A 157 TRP A 159 MET A 160 PHE A 206 SITE 2 AC3 5 HOH A 660 SITE 1 AC4 9 ALA A 79 TYR A 80 LEU A 108 TYR A 128 SITE 2 AC4 9 MET A 160 ARG A 163 HIS A 252 ARG A 255 SITE 3 AC4 9 FMN A 402 CRYST1 137.911 137.911 111.773 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007251 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008947 0.00000