HEADER LYASE 26-FEB-18 5ZE4 TITLE THE STRUCTURE OF HOLO- STRUCTURE OF DHAD COMPLEX WITH [2FE-2S] CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROXY-ACID DEHYDRATASE, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DAD; COMPND 5 EC: 4.2.1.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DHAD, ILVD, AT3G23940, F14O13.13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS [2FE-2S] CLUSTER, INHIBIT, BCAABIOSYNTHETIC PATHWAY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHOU,X.ZANG,Y.TANG,Y.YAN,J.GAN,L.WU REVDAT 3 22-NOV-23 5ZE4 1 REMARK REVDAT 2 01-AUG-18 5ZE4 1 JRNL REVDAT 1 18-JUL-18 5ZE4 0 JRNL AUTH Y.YAN,Q.LIU,X.ZANG,S.YUAN,U.BAT-ERDENE,C.NGUYEN,J.GAN, JRNL AUTH 2 J.ZHOU,S.E.JACOBSEN,Y.TANG JRNL TITL RESISTANCE-GENE-DIRECTED DISCOVERY OF A NATURAL-PRODUCT JRNL TITL 2 HERBICIDE WITH A NEW MODE OF ACTION. JRNL REF NATURE V. 559 415 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 29995859 JRNL DOI 10.1038/S41586-018-0319-4 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 33076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1709 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1964 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4314 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4149 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5834 ; 1.191 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9612 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 5.805 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;34.639 ;24.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 749 ;11.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4868 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 866 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2279 ; 1.234 ; 2.558 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2277 ; 1.231 ; 2.558 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2845 ; 1.618 ; 3.830 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2846 ; 1.618 ; 3.830 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2035 ; 1.221 ; 2.763 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2036 ; 1.220 ; 2.764 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2988 ; 1.542 ; 4.069 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4738 ; 2.098 ;20.080 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4706 ; 2.014 ;20.054 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8459 ; 1.027 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 24 ;28.220 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8491 ; 4.776 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 574 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1470 -12.8445 -1.6749 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0221 REMARK 3 T33: 0.0120 T12: -0.0109 REMARK 3 T13: 0.0045 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1031 L22: 0.3704 REMARK 3 L33: 0.2399 L12: 0.1029 REMARK 3 L13: -0.0292 L23: -0.1532 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.0091 S13: 0.0215 REMARK 3 S21: 0.0101 S22: -0.0026 S23: -0.0039 REMARK 3 S31: -0.0246 S32: 0.0489 S33: -0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 5ZE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36139 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.10 REMARK 200 R MERGE (I) : 0.18900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5J83 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.0, 1.5 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 67.73350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.73350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.98900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.73350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 67.73350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.98900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.73350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.73350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.98900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 67.73350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.73350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.98900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 ILE A 13 REMARK 465 THR A 14 REMARK 465 ASP A 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 377 CG CD OE1 OE2 REMARK 470 HIS A 493 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 139 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 7 -52.53 -137.19 REMARK 500 ASN A 20 50.17 -105.95 REMARK 500 ASP A 140 -84.06 -9.21 REMARK 500 TYR A 233 -9.87 78.19 REMARK 500 ASN A 371 44.35 -104.43 REMARK 500 ARG A 399 -125.19 -118.21 REMARK 500 HIS A 493 18.40 59.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 601 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 66 SG REMARK 620 2 FES A 601 S1 108.0 REMARK 620 3 FES A 601 S2 102.2 111.2 REMARK 620 4 CYS A 139 SG 111.4 114.1 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 140 OD2 REMARK 620 2 GLU A 463 OE1 149.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 601 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 211 SG REMARK 620 2 FES A 601 S1 108.4 REMARK 620 3 FES A 601 S2 117.1 108.0 REMARK 620 4 ACT A 605 OXT 100.1 117.8 105.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 606 DBREF 5ZE4 A 2 574 UNP Q9LIR4 ILVD_ARATH 36 608 SEQADV 5ZE4 ALA A 525 UNP Q9LIR4 LYS 559 ENGINEERED MUTATION SEQADV 5ZE4 ALA A 526 UNP Q9LIR4 LYS 560 ENGINEERED MUTATION SEQRES 1 A 573 ALA GLN SER VAL THR ALA ASP PRO SER PRO PRO ILE THR SEQRES 2 A 573 ASP THR ASN LYS LEU ASN LYS TYR SER SER ARG ILE THR SEQRES 3 A 573 GLU PRO LYS SER GLN GLY GLY SER GLN ALA ILE LEU HIS SEQRES 4 A 573 GLY VAL GLY LEU SER ASP ASP ASP LEU LEU LYS PRO GLN SEQRES 5 A 573 ILE GLY ILE SER SER VAL TRP TYR GLU GLY ASN THR CYS SEQRES 6 A 573 ASN MET HIS LEU LEU LYS LEU SER GLU ALA VAL LYS GLU SEQRES 7 A 573 GLY VAL GLU ASN ALA GLY MET VAL GLY PHE ARG PHE ASN SEQRES 8 A 573 THR ILE GLY VAL SER ASP ALA ILE SER MET GLY THR ARG SEQRES 9 A 573 GLY MET CYS PHE SER LEU GLN SER ARG ASP LEU ILE ALA SEQRES 10 A 573 ASP SER ILE GLU THR VAL MET SER ALA GLN TRP TYR ASP SEQRES 11 A 573 GLY ASN ILE SER ILE PRO GLY CYS ASP LYS ASN MET PRO SEQRES 12 A 573 GLY THR ILE MET ALA MET GLY ARG LEU ASN ARG PRO GLY SEQRES 13 A 573 ILE MET VAL TYR GLY GLY THR ILE LYS PRO GLY HIS PHE SEQRES 14 A 573 GLN ASP LYS THR TYR ASP ILE VAL SER ALA PHE GLN SER SEQRES 15 A 573 TYR GLY GLU PHE VAL SER GLY SER ILE SER ASP GLU GLN SEQRES 16 A 573 ARG LYS THR VAL LEU HIS HIS SER CYS PRO GLY ALA GLY SEQRES 17 A 573 ALA CYS GLY GLY MET TYR THR ALA ASN THR MET ALA SER SEQRES 18 A 573 ALA ILE GLU ALA MET GLY MET SER LEU PRO TYR SER SER SEQRES 19 A 573 SER ILE PRO ALA GLU ASP PRO LEU LYS LEU ASP GLU CYS SEQRES 20 A 573 ARG LEU ALA GLY LYS TYR LEU LEU GLU LEU LEU LYS MET SEQRES 21 A 573 ASP LEU LYS PRO ARG ASP ILE ILE THR PRO LYS SER LEU SEQRES 22 A 573 ARG ASN ALA MET VAL SER VAL MET ALA LEU GLY GLY SER SEQRES 23 A 573 THR ASN ALA VAL LEU HIS LEU ILE ALA ILE ALA ARG SER SEQRES 24 A 573 VAL GLY LEU GLU LEU THR LEU ASP ASP PHE GLN LYS VAL SEQRES 25 A 573 SER ASP ALA VAL PRO PHE LEU ALA ASP LEU LYS PRO SER SEQRES 26 A 573 GLY LYS TYR VAL MET GLU ASP ILE HIS LYS ILE GLY GLY SEQRES 27 A 573 THR PRO ALA VAL LEU ARG TYR LEU LEU GLU LEU GLY LEU SEQRES 28 A 573 MET ASP GLY ASP CYS MET THR VAL THR GLY GLN THR LEU SEQRES 29 A 573 ALA GLN ASN LEU GLU ASN VAL PRO SER LEU THR GLU GLY SEQRES 30 A 573 GLN GLU ILE ILE ARG PRO LEU SER ASN PRO ILE LYS GLU SEQRES 31 A 573 THR GLY HIS ILE GLN ILE LEU ARG GLY ASP LEU ALA PRO SEQRES 32 A 573 ASP GLY SER VAL ALA LYS ILE THR GLY LYS GLU GLY LEU SEQRES 33 A 573 TYR PHE SER GLY PRO ALA LEU VAL PHE GLU GLY GLU GLU SEQRES 34 A 573 SER MET LEU ALA ALA ILE SER ALA ASP PRO MET SER PHE SEQRES 35 A 573 LYS GLY THR VAL VAL VAL ILE ARG GLY GLU GLY PRO LYS SEQRES 36 A 573 GLY GLY PRO GLY MET PRO GLU MET LEU THR PRO THR SER SEQRES 37 A 573 ALA ILE MET GLY ALA GLY LEU GLY LYS GLU CYS ALA LEU SEQRES 38 A 573 LEU THR ASP GLY ARG PHE SER GLY GLY SER HIS GLY PHE SEQRES 39 A 573 VAL VAL GLY HIS ILE CYS PRO GLU ALA GLN GLU GLY GLY SEQRES 40 A 573 PRO ILE GLY LEU ILE LYS ASN GLY ASP ILE ILE THR ILE SEQRES 41 A 573 ASP ILE GLY ALA ALA ARG ILE ASP THR GLN VAL SER PRO SEQRES 42 A 573 GLU GLU MET ASN ASP ARG ARG LYS LYS TRP THR ALA PRO SEQRES 43 A 573 ALA TYR LYS VAL ASN ARG GLY VAL LEU TYR LYS TYR ILE SEQRES 44 A 573 LYS ASN VAL GLN SER ALA SER ASP GLY CYS VAL THR ASP SEQRES 45 A 573 GLU HET FES A 601 4 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET ACT A 605 4 HET MG A 606 1 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION FORMUL 2 FES FE2 S2 FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 MG MG 2+ FORMUL 8 HOH *117(H2 O) HELIX 1 AA1 SER A 23 GLU A 28 1 6 HELIX 2 AA2 PRO A 29 SER A 31 5 3 HELIX 3 AA3 GLN A 32 VAL A 42 1 11 HELIX 4 AA4 ASP A 47 LYS A 51 5 5 HELIX 5 AA5 HIS A 69 ALA A 84 1 16 HELIX 6 AA6 SER A 97 MET A 102 1 6 HELIX 7 AA7 THR A 104 CYS A 108 5 5 HELIX 8 AA8 PHE A 109 TRP A 129 1 21 HELIX 9 AA9 LYS A 141 ASN A 154 1 14 HELIX 10 AB1 ASP A 176 SER A 189 1 14 HELIX 11 AB2 SER A 193 SER A 204 1 12 HELIX 12 AB3 TYR A 215 MET A 227 1 13 HELIX 13 AB4 ASP A 241 ASP A 262 1 22 HELIX 14 AB5 LYS A 264 ILE A 269 1 6 HELIX 15 AB6 THR A 270 GLY A 285 1 16 HELIX 16 AB7 THR A 288 VAL A 301 1 14 HELIX 17 AB8 THR A 306 VAL A 317 1 12 HELIX 18 AB9 VAL A 330 ILE A 337 1 8 HELIX 19 AC1 GLY A 338 LEU A 350 1 13 HELIX 20 AC2 THR A 364 ASN A 371 1 8 HELIX 21 AC3 GLY A 428 ASP A 439 1 12 HELIX 22 AC4 PRO A 440 LYS A 444 5 5 HELIX 23 AC5 LEU A 465 ALA A 474 1 10 HELIX 24 AC6 GLU A 503 GLY A 507 5 5 HELIX 25 AC7 GLY A 508 ILE A 513 5 6 HELIX 26 AC8 SER A 533 TRP A 544 1 12 HELIX 27 AC9 ARG A 553 VAL A 563 1 11 HELIX 28 AD1 SER A 565 GLY A 569 5 5 SHEET 1 AA1 4 VAL A 87 ASN A 92 0 SHEET 2 AA1 4 GLN A 53 SER A 58 1 N ILE A 54 O PHE A 89 SHEET 3 AA1 4 GLY A 132 ILE A 136 1 O GLY A 132 N GLY A 55 SHEET 4 AA1 4 GLY A 157 MET A 159 1 O ILE A 158 N SER A 135 SHEET 1 AA2 2 GLY A 168 PHE A 170 0 SHEET 2 AA2 2 LYS A 173 TYR A 175 -1 O TYR A 175 N GLY A 168 SHEET 1 AA3 8 ILE A 395 ILE A 397 0 SHEET 2 AA3 8 VAL A 408 LYS A 410 -1 O ALA A 409 N GLN A 396 SHEET 3 AA3 8 VAL A 496 GLY A 498 -1 O GLY A 498 N VAL A 408 SHEET 4 AA3 8 ALA A 481 THR A 484 1 N LEU A 482 O VAL A 497 SHEET 5 AA3 8 VAL A 447 ILE A 450 1 N VAL A 448 O LEU A 483 SHEET 6 AA3 8 TYR A 418 PHE A 426 1 N PHE A 426 O VAL A 449 SHEET 7 AA3 8 ILE A 518 ASP A 522 -1 O ILE A 521 N PHE A 419 SHEET 8 AA3 8 ARG A 527 THR A 530 -1 O ASP A 529 N THR A 520 SHEET 1 AA4 2 GLU A 463 MET A 464 0 SHEET 2 AA4 2 ARG A 487 PHE A 488 1 O ARG A 487 N MET A 464 LINK SG CYS A 66 FE1 FES A 601 1555 1555 2.38 LINK SG CYS A 139 FE1 FES A 601 1555 1555 2.35 LINK OD2 ASP A 140 MG MG A 606 1555 1555 2.19 LINK SG CYS A 211 FE2 FES A 601 1555 1555 2.30 LINK OE1 GLU A 463 MG MG A 606 1555 1555 2.51 LINK FE2 FES A 601 OXT ACT A 605 1555 1555 2.36 CISPEP 1 LYS A 324 PRO A 325 0 4.29 CISPEP 2 GLY A 458 PRO A 459 0 -13.07 CISPEP 3 CYS A 501 PRO A 502 0 -4.90 SITE 1 AC1 8 CYS A 66 ASP A 98 ALA A 99 CYS A 139 SITE 2 AC1 8 ASP A 140 CYS A 211 ALA A 217 ACT A 605 SITE 1 AC2 4 ARG A 25 THR A 104 ARG A 105 TRP A 129 SITE 1 AC3 5 ASN A 17 PRO A 29 LYS A 30 SER A 31 SITE 2 AC3 5 TYR A 184 SITE 1 AC4 4 SER A 45 ASP A 46 HIS A 202 HOH A 804 SITE 1 AC5 3 CYS A 211 TYR A 215 FES A 601 SITE 1 AC6 4 ASP A 98 ASP A 140 LYS A 141 GLU A 463 CRYST1 135.467 135.467 65.978 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015157 0.00000