HEADER TRANSFERASE 15-MAR-17 5XB2 TITLE ADP-MG-F-DTMP BOUND CRYSTAL STRUCTURE OF THYMIDYLATE KINASE (AQ_969) TITLE 2 FROM AQUIFEX AEOLICUS VF5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS (STRAIN VF5); SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: TMK, AQ_969; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KINASE, TRANFERASE, COMPLEX, NUCLEOTIDE BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BISWAS,J.JEYAKANTHAN,K.SEKAR REVDAT 4 22-NOV-23 5XB2 1 REMARK REVDAT 3 30-AUG-17 5XB2 1 JRNL REVDAT 2 16-AUG-17 5XB2 1 JRNL REVDAT 1 28-JUN-17 5XB2 0 JRNL AUTH A.BISWAS,A.SHUKLA,S.K.CHAUDHARY,R.SANTHOSH,J.JEYAKANTHAN, JRNL AUTH 2 K.SEKAR JRNL TITL STRUCTURAL STUDIES OF A HYPERTHERMOPHILIC THYMIDYLATE KINASE JRNL TITL 2 ENZYME REVEAL CONFORMATIONAL SUBSTATES ALONG THE REACTION JRNL TITL 3 COORDINATE JRNL REF FEBS J. V. 284 2527 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28627020 JRNL DOI 10.1111/FEBS.14140 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 23182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9569 - 4.3212 0.99 2792 169 0.1455 0.1884 REMARK 3 2 4.3212 - 3.4301 0.99 2797 169 0.1526 0.2139 REMARK 3 3 3.4301 - 2.9966 0.99 2784 158 0.1937 0.2218 REMARK 3 4 2.9966 - 2.7226 0.99 2792 146 0.2074 0.3057 REMARK 3 5 2.7226 - 2.5275 0.99 2792 145 0.2159 0.3317 REMARK 3 6 2.5275 - 2.3785 0.98 2788 149 0.2246 0.3344 REMARK 3 7 2.3785 - 2.2593 0.97 2772 132 0.2538 0.3940 REMARK 3 8 2.2593 - 2.1610 0.87 2491 106 0.3383 0.4165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3230 REMARK 3 ANGLE : 1.009 4369 REMARK 3 CHIRALITY : 0.049 507 REMARK 3 PLANARITY : 0.005 541 REMARK 3 DIHEDRAL : 17.975 1959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23220 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 54.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE TRIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL 3350, PH 7.0, MICROBATCH, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 195 REMARK 465 VAL A 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 25 NZ REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 84 NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 164 CE NZ REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 ARG B 194 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 108 CD OE1 OE2 REMARK 470 LYS A 111 CE NZ REMARK 470 LYS A 122 CD CE NZ REMARK 470 ASN A 144 CG OD1 ND2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 LYS A 164 CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 VAL A 192 CG1 CG2 REMARK 470 LEU A 193 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 301 O HOH B 368 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 75 -47.64 -131.73 REMARK 500 ARG B 90 145.55 84.92 REMARK 500 PHE B 91 -147.20 -152.17 REMARK 500 LYS A 75 -49.20 -135.36 REMARK 500 ARG A 90 136.19 89.24 REMARK 500 PHE A 91 -148.32 -142.93 REMARK 500 LYS A 143 32.64 -98.36 REMARK 500 VAL A 192 -41.09 -168.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 14 OG1 REMARK 620 2 TMP B 202 O1P 146.2 REMARK 620 3 TMP B 202 O2P 162.8 50.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMP A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XAI RELATED DB: PDB REMARK 900 RELATED ID: 5XB3 RELATED DB: PDB REMARK 900 RELATED ID: 5XB5 RELATED DB: PDB REMARK 900 RELATED ID: 5XBH RELATED DB: PDB DBREF 5XB2 B 1 195 UNP O67099 KTHY_AQUAE 1 195 DBREF 5XB2 A 1 195 UNP O67099 KTHY_AQUAE 1 195 SEQRES 1 B 195 MET LEU ILE ALA PHE GLU GLY ILE ASP GLY SER GLY LYS SEQRES 2 B 195 THR THR GLN ALA LYS LYS LEU TYR GLU TYR LEU LYS GLN SEQRES 3 B 195 LYS GLY TYR PHE VAL SER LEU TYR ARG GLU PRO GLY GLY SEQRES 4 B 195 THR LYS VAL GLY GLU VAL LEU ARG GLU ILE LEU LEU THR SEQRES 5 B 195 GLU GLU LEU ASP GLU ARG THR GLU LEU LEU LEU PHE GLU SEQRES 6 B 195 ALA SER ARG SER LYS LEU ILE GLU GLU LYS ILE ILE PRO SEQRES 7 B 195 ASP LEU LYS ARG ASP LYS VAL VAL ILE LEU ASP ARG PHE SEQRES 8 B 195 VAL LEU SER THR ILE ALA TYR GLN GLY TYR GLY LYS GLY SEQRES 9 B 195 LEU ASP VAL GLU PHE ILE LYS ASN LEU ASN GLU PHE ALA SEQRES 10 B 195 THR ARG GLY VAL LYS PRO ASP ILE THR LEU LEU LEU ASP SEQRES 11 B 195 ILE PRO VAL ASP ILE ALA LEU ARG ARG LEU LYS GLU LYS SEQRES 12 B 195 ASN ARG PHE GLU ASN LYS GLU PHE LEU GLU LYS VAL ARG SEQRES 13 B 195 LYS GLY PHE LEU GLU LEU ALA LYS GLU GLU GLU ASN VAL SEQRES 14 B 195 VAL VAL ILE ASP ALA SER GLY GLU GLU GLU GLU VAL PHE SEQRES 15 B 195 LYS GLU ILE LEU ARG ALA LEU SER GLY VAL LEU ARG VAL SEQRES 1 A 195 MET LEU ILE ALA PHE GLU GLY ILE ASP GLY SER GLY LYS SEQRES 2 A 195 THR THR GLN ALA LYS LYS LEU TYR GLU TYR LEU LYS GLN SEQRES 3 A 195 LYS GLY TYR PHE VAL SER LEU TYR ARG GLU PRO GLY GLY SEQRES 4 A 195 THR LYS VAL GLY GLU VAL LEU ARG GLU ILE LEU LEU THR SEQRES 5 A 195 GLU GLU LEU ASP GLU ARG THR GLU LEU LEU LEU PHE GLU SEQRES 6 A 195 ALA SER ARG SER LYS LEU ILE GLU GLU LYS ILE ILE PRO SEQRES 7 A 195 ASP LEU LYS ARG ASP LYS VAL VAL ILE LEU ASP ARG PHE SEQRES 8 A 195 VAL LEU SER THR ILE ALA TYR GLN GLY TYR GLY LYS GLY SEQRES 9 A 195 LEU ASP VAL GLU PHE ILE LYS ASN LEU ASN GLU PHE ALA SEQRES 10 A 195 THR ARG GLY VAL LYS PRO ASP ILE THR LEU LEU LEU ASP SEQRES 11 A 195 ILE PRO VAL ASP ILE ALA LEU ARG ARG LEU LYS GLU LYS SEQRES 12 A 195 ASN ARG PHE GLU ASN LYS GLU PHE LEU GLU LYS VAL ARG SEQRES 13 A 195 LYS GLY PHE LEU GLU LEU ALA LYS GLU GLU GLU ASN VAL SEQRES 14 A 195 VAL VAL ILE ASP ALA SER GLY GLU GLU GLU GLU VAL PHE SEQRES 15 A 195 LYS GLU ILE LEU ARG ALA LEU SER GLY VAL LEU ARG VAL HET ADP B 201 27 HET TMP B 202 21 HET MG B 203 1 HET F B 204 1 HET F B 205 1 HET F B 206 1 HET ADP A 201 27 HET TMP A 202 21 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM TMP THYMIDINE-5'-PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM F FLUORIDE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 TMP 2(C10 H15 N2 O8 P) FORMUL 5 MG MG 2+ FORMUL 6 F 3(F 1-) FORMUL 11 HOH *143(H2 O) HELIX 1 AA1 GLY B 12 LYS B 27 1 16 HELIX 2 AA2 THR B 40 GLU B 53 1 14 HELIX 3 AA3 ASP B 56 LYS B 75 1 20 HELIX 4 AA4 LYS B 75 ARG B 82 1 8 HELIX 5 AA5 PHE B 91 GLY B 100 1 10 HELIX 6 AA6 ASP B 106 ARG B 119 1 14 HELIX 7 AA7 PRO B 132 LYS B 143 1 12 HELIX 8 AA8 ASN B 148 GLU B 166 1 19 HELIX 9 AA9 GLU B 177 GLY B 191 1 15 HELIX 10 AB1 GLY A 12 LYS A 27 1 16 HELIX 11 AB2 THR A 40 GLU A 53 1 14 HELIX 12 AB3 ASP A 56 LYS A 75 1 20 HELIX 13 AB4 LYS A 75 ARG A 82 1 8 HELIX 14 AB5 PHE A 91 GLY A 100 1 10 HELIX 15 AB6 ASP A 106 ARG A 119 1 14 HELIX 16 AB7 PRO A 132 LYS A 143 1 12 HELIX 17 AB8 ASN A 148 GLU A 166 1 19 HELIX 18 AB9 GLU A 177 GLY A 191 1 15 SHEET 1 AA1 5 VAL B 31 ARG B 35 0 SHEET 2 AA1 5 VAL B 85 ASP B 89 1 O VAL B 85 N SER B 32 SHEET 3 AA1 5 LEU B 2 GLU B 6 1 N ILE B 3 O LEU B 88 SHEET 4 AA1 5 ILE B 125 ASP B 130 1 O LEU B 127 N ALA B 4 SHEET 5 AA1 5 VAL B 169 ASP B 173 1 O ILE B 172 N LEU B 128 SHEET 1 AA2 5 VAL A 31 ARG A 35 0 SHEET 2 AA2 5 VAL A 85 ASP A 89 1 O ASP A 89 N TYR A 34 SHEET 3 AA2 5 LEU A 2 GLU A 6 1 N PHE A 5 O LEU A 88 SHEET 4 AA2 5 ILE A 125 ASP A 130 1 O LEU A 127 N ALA A 4 SHEET 5 AA2 5 VAL A 169 ASP A 173 1 O ILE A 172 N LEU A 128 LINK OG1 THR B 14 MG MG B 203 1555 1555 2.81 LINK O1P TMP B 202 MG MG B 203 1555 1555 2.82 LINK O2P TMP B 202 MG MG B 203 1555 1555 2.92 CISPEP 1 GLU B 36 PRO B 37 0 -0.34 CISPEP 2 GLU A 36 PRO A 37 0 -2.79 SITE 1 AC1 17 GLY B 10 SER B 11 GLY B 12 LYS B 13 SITE 2 AC1 17 THR B 14 THR B 15 ARG B 139 ARG B 145 SITE 3 AC1 17 GLY B 176 GLU B 177 GLU B 178 MG B 203 SITE 4 AC1 17 F B 204 F B 205 HOH B 308 HOH B 329 SITE 5 AC1 17 HOH B 333 SITE 1 AC2 17 ASP B 9 GLU B 36 ARG B 47 PHE B 64 SITE 2 AC2 17 ARG B 68 ARG B 90 THR B 95 TYR B 98 SITE 3 AC2 17 GLN B 99 ARG B 145 MG B 203 F B 204 SITE 4 AC2 17 F B 205 F B 206 HOH B 308 HOH B 346 SITE 5 AC2 17 HOH B 353 SITE 1 AC3 7 THR B 14 ASP B 89 ADP B 201 TMP B 202 SITE 2 AC3 7 F B 204 F B 205 F B 206 SITE 1 AC4 6 LYS B 13 THR B 14 ASP B 89 ADP B 201 SITE 2 AC4 6 TMP B 202 MG B 203 SITE 1 AC5 5 THR B 14 ARG B 145 ADP B 201 TMP B 202 SITE 2 AC5 5 MG B 203 SITE 1 AC6 5 THR B 14 ASP B 89 TMP B 202 MG B 203 SITE 2 AC6 5 HOH B 348 SITE 1 AC7 14 GLY A 10 SER A 11 GLY A 12 LYS A 13 SITE 2 AC7 14 THR A 14 THR A 15 ARG A 139 LYS A 143 SITE 3 AC7 14 ARG A 145 GLY A 176 GLU A 177 GLU A 178 SITE 4 AC7 14 HOH A 320 HOH A 336 SITE 1 AC8 11 ASP A 9 GLU A 36 ARG A 47 PHE A 64 SITE 2 AC8 11 ARG A 68 ARG A 90 THR A 95 TYR A 98 SITE 3 AC8 11 GLN A 99 ARG A 145 HOH A 320 CRYST1 42.620 52.990 54.019 88.90 90.83 70.53 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023463 -0.008295 0.000551 0.00000 SCALE2 0.000000 0.020016 -0.000510 0.00000 SCALE3 0.000000 0.000000 0.018520 0.00000