HEADER TRANSFERASE 09-DEC-16 5WT6 TITLE CYSTEINE PERSULFIDE INTERMEDIATE OF NIFS FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE ISCS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE DESULFURASE NIFS; COMPND 5 EC: 2.8.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: ATCC 700392 / 26695; SOURCE 6 GENE: ISCS, HP_0220; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS IRON-SULFUR CLUSTER BIOGENESIS, CYSTEINE DESULFURASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,R.NAKAMURA,Y.TAKAHASHI REVDAT 3 15-NOV-23 5WT6 1 REMARK REVDAT 2 08-NOV-23 5WT6 1 LINK REVDAT 1 13-DEC-17 5WT6 0 JRNL AUTH T.FUJISHIRO,R.NAKAMURA,Y.TAKAHASHI JRNL TITL STRUCTURAL SNAPSHOT OF CYSTEINE DESULFURASE NIFS WITH JRNL TITL 2 L-CYSTEINE IN INITIATION OF CATALYSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8521 - 5.2369 1.00 2779 147 0.2006 0.2173 REMARK 3 2 5.2369 - 4.1573 1.00 2640 139 0.2043 0.2204 REMARK 3 3 4.1573 - 3.6320 1.00 2593 136 0.2264 0.2690 REMARK 3 4 3.6320 - 3.3000 1.00 2576 136 0.2761 0.3350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2900 REMARK 3 ANGLE : 0.673 3928 REMARK 3 CHIRALITY : 0.048 453 REMARK 3 PLANARITY : 0.004 504 REMARK 3 DIHEDRAL : 11.933 1735 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4131 -34.6551 -2.4789 REMARK 3 T TENSOR REMARK 3 T11: 0.4968 T22: 0.3862 REMARK 3 T33: 0.5995 T12: 0.0313 REMARK 3 T13: 0.0372 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 3.5401 L22: 3.2869 REMARK 3 L33: 6.1616 L12: -0.5156 REMARK 3 L13: 1.9115 L23: -0.8465 REMARK 3 S TENSOR REMARK 3 S11: 0.1412 S12: 0.2786 S13: -0.7996 REMARK 3 S21: -0.0927 S22: -0.0954 S23: 0.1076 REMARK 3 S31: 1.0381 S32: 0.0292 S33: -0.0994 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4796 -21.4157 -5.7617 REMARK 3 T TENSOR REMARK 3 T11: 0.3228 T22: 0.8041 REMARK 3 T33: 0.6618 T12: -0.0359 REMARK 3 T13: -0.0906 T23: 0.1377 REMARK 3 L TENSOR REMARK 3 L11: 6.2478 L22: 6.0226 REMARK 3 L33: 6.2846 L12: 0.6854 REMARK 3 L13: -1.6441 L23: -0.7294 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.6559 S13: 0.4592 REMARK 3 S21: 0.5780 S22: -0.1496 S23: -1.2418 REMARK 3 S31: -0.0516 S32: 1.2136 S33: 0.0959 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1320 -13.6124 -19.3049 REMARK 3 T TENSOR REMARK 3 T11: 0.7055 T22: 1.1652 REMARK 3 T33: 0.7999 T12: -0.0586 REMARK 3 T13: 0.1410 T23: 0.2660 REMARK 3 L TENSOR REMARK 3 L11: 5.2738 L22: 4.2095 REMARK 3 L33: 4.1527 L12: 0.3211 REMARK 3 L13: -0.6659 L23: 0.2442 REMARK 3 S TENSOR REMARK 3 S11: -0.3985 S12: 1.2536 S13: 0.8419 REMARK 3 S21: -0.9792 S22: 0.1346 S23: -0.8677 REMARK 3 S31: -0.0962 S32: 1.3701 S33: 0.2243 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8405 -28.5896 -9.1215 REMARK 3 T TENSOR REMARK 3 T11: 0.3874 T22: 0.5368 REMARK 3 T33: 0.5800 T12: 0.0773 REMARK 3 T13: 0.1036 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 2.6111 L22: 5.1082 REMARK 3 L33: 3.2796 L12: 0.3742 REMARK 3 L13: 0.3910 L23: -0.4471 REMARK 3 S TENSOR REMARK 3 S11: -0.0966 S12: 0.5391 S13: -0.4428 REMARK 3 S21: -0.2613 S22: -0.0486 S23: -0.2946 REMARK 3 S31: 0.2321 S32: 0.4225 S33: 0.1505 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5435 -20.6120 -32.3269 REMARK 3 T TENSOR REMARK 3 T11: 1.0491 T22: 1.1546 REMARK 3 T33: 0.6749 T12: -0.0347 REMARK 3 T13: -0.1253 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 6.7789 L22: 3.0156 REMARK 3 L33: 4.6435 L12: -1.7382 REMARK 3 L13: 0.6851 L23: -1.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.5466 S12: 2.2329 S13: 0.4220 REMARK 3 S21: -1.3439 S22: -0.4672 S23: 0.0019 REMARK 3 S31: -0.1250 S32: 0.0058 S33: -0.0604 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9260 -19.5285 -25.5470 REMARK 3 T TENSOR REMARK 3 T11: 0.8484 T22: 1.2529 REMARK 3 T33: 0.8166 T12: -0.1718 REMARK 3 T13: -0.1654 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.3897 L22: 5.9666 REMARK 3 L33: 3.1795 L12: 1.3507 REMARK 3 L13: -1.4356 L23: -0.9741 REMARK 3 S TENSOR REMARK 3 S11: -0.2624 S12: 0.9308 S13: 0.4517 REMARK 3 S21: -1.5403 S22: 0.4580 S23: -0.5127 REMARK 3 S31: 0.3912 S32: 0.6446 S33: -0.2137 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 363 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6902 -20.1783 -33.5768 REMARK 3 T TENSOR REMARK 3 T11: 0.9988 T22: 1.4550 REMARK 3 T33: 0.7562 T12: -0.1535 REMARK 3 T13: -0.3261 T23: 0.1257 REMARK 3 L TENSOR REMARK 3 L11: 4.7154 L22: 2.9630 REMARK 3 L33: 6.4301 L12: -0.5820 REMARK 3 L13: 0.3590 L23: 1.3996 REMARK 3 S TENSOR REMARK 3 S11: 0.2006 S12: 1.2989 S13: 0.1906 REMARK 3 S21: -2.0243 S22: -0.2282 S23: 1.3470 REMARK 3 S31: -0.5242 S32: -0.2601 S33: 0.0170 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11147 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1ECX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES/NAOH, PEG 4000, GLYCEROL, REMARK 280 ISOPROPANOL, L-CYSTEINE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.98500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.99250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.97750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.99250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.97750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 331 REMARK 465 ASP A 332 REMARK 465 LEU A 333 REMARK 465 GLU A 334 REMARK 465 ALA A 335 REMARK 465 ASN A 336 REMARK 465 PRO A 337 REMARK 465 VAL A 338 REMARK 465 MET A 339 REMARK 465 VAL A 340 REMARK 465 ALA A 341 REMARK 465 ILE A 342 REMARK 465 GLY A 343 REMARK 465 ALA A 344 REMARK 465 SER A 345 REMARK 465 LYS A 346 REMARK 465 GLU A 347 REMARK 465 LEU A 348 REMARK 465 SER A 386 REMARK 465 TYR A 387 REMARK 465 VAL A 388 REMARK 465 ASP A 389 REMARK 465 LEU A 390 REMARK 465 VAL A 391 REMARK 465 PRO A 392 REMARK 465 ARG A 393 REMARK 465 GLY A 394 REMARK 465 SER A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 133 OE1 GLN A 136 2.01 REMARK 500 N THR A 133 OE1 GLN A 136 2.07 REMARK 500 OD2 ASP A 367 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 -95.25 -98.30 REMARK 500 HIS A 30 62.67 -107.82 REMARK 500 LYS A 94 80.60 -55.19 REMARK 500 ASN A 95 46.85 -92.65 REMARK 500 ALA A 134 -30.39 82.75 REMARK 500 PRO A 162 51.97 -66.84 REMARK 500 GLU A 164 -51.10 73.12 REMARK 500 PRO A 283 -102.52 -37.07 REMARK 500 ARG A 304 -119.15 27.02 REMARK 500 CSS A 328 -91.57 52.19 REMARK 500 THR A 351 129.75 62.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDA A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WT2 RELATED DB: PDB REMARK 900 RELATED ID: 5WT4 RELATED DB: PDB REMARK 900 RELATED ID: 5WT5 RELATED DB: PDB DBREF 5WT6 A 1 387 UNP O25008 ISCS_HELPY 1 387 SEQADV 5WT6 VAL A 2 UNP O25008 LEU 2 ENGINEERED MUTATION SEQADV 5WT6 ARG A 138 UNP O25008 LYS 138 ENGINEERED MUTATION SEQADV 5WT6 VAL A 388 UNP O25008 EXPRESSION TAG SEQADV 5WT6 ASP A 389 UNP O25008 EXPRESSION TAG SEQADV 5WT6 LEU A 390 UNP O25008 EXPRESSION TAG SEQADV 5WT6 VAL A 391 UNP O25008 EXPRESSION TAG SEQADV 5WT6 PRO A 392 UNP O25008 EXPRESSION TAG SEQADV 5WT6 ARG A 393 UNP O25008 EXPRESSION TAG SEQADV 5WT6 GLY A 394 UNP O25008 EXPRESSION TAG SEQADV 5WT6 SER A 395 UNP O25008 EXPRESSION TAG SEQADV 5WT6 HIS A 396 UNP O25008 EXPRESSION TAG SEQADV 5WT6 HIS A 397 UNP O25008 EXPRESSION TAG SEQADV 5WT6 HIS A 398 UNP O25008 EXPRESSION TAG SEQADV 5WT6 HIS A 399 UNP O25008 EXPRESSION TAG SEQADV 5WT6 HIS A 400 UNP O25008 EXPRESSION TAG SEQADV 5WT6 HIS A 401 UNP O25008 EXPRESSION TAG SEQRES 1 A 401 MET VAL GLN ARG ILE TYR LEU ASP ASN ASN ALA THR THR SEQRES 2 A 401 ARG ILE ASP PRO LYS VAL LYS GLU ILE MET ASP PRO PHE SEQRES 3 A 401 LEU ARG ASP HIS TYR GLY ASN PRO SER SER LEU HIS GLN SEQRES 4 A 401 PHE GLY THR GLU THR HIS PRO ALA ILE ALA GLU ALA LEU SEQRES 5 A 401 ASP LYS LEU TYR LYS GLY ILE ASN ALA ARG ASP ILE ASP SEQRES 6 A 401 ASP VAL ILE ILE THR SER CYS ALA THR GLU SER ASN ASN SEQRES 7 A 401 TRP VAL LEU LYS GLY VAL TYR PHE ASP GLU CYS LEU LYS SEQRES 8 A 401 LYS GLY LYS ASN HIS ILE VAL THR THR VAL ALA GLU HIS SEQRES 9 A 401 PRO ALA VAL ARG SER THR CYS ASN PHE LEU GLU SER LEU SEQRES 10 A 401 GLY VAL GLU VAL THR TYR LEU PRO ILE ASN GLU HIS GLY SEQRES 11 A 401 SER ILE THR ALA GLU GLN VAL ARG GLU ALA ILE THR GLU SEQRES 12 A 401 LYS THR ALA LEU VAL SER VAL MET TRP ALA ASN ASN GLU SEQRES 13 A 401 THR GLY LEU ILE PHE PRO ILE GLU GLU ILE GLY ALA ILE SEQRES 14 A 401 CYS LYS GLU LYS GLY VAL LEU PHE HIS THR ASP ALA VAL SEQRES 15 A 401 GLN ALA ILE GLY LYS ILE PRO VAL ASP VAL LEU LYS ALA SEQRES 16 A 401 ASN ALA ASP PHE LEU SER PHE SER ALA HIS LYS PHE HIS SEQRES 17 A 401 GLY PRO LYS GLY ILE GLY GLY LEU TYR ILE ARG SER GLY SEQRES 18 A 401 VAL GLY LEU THR PRO LEU PHE HIS GLY GLY GLU HIS MET SEQRES 19 A 401 ASN GLY ARG ARG SER GLY THR LEU ASN VAL PRO TYR ILE SEQRES 20 A 401 VAL GLY MET GLY GLU ALA MET LYS LEU ALA VAL GLU HIS SEQRES 21 A 401 LEU ASP TYR GLU LYS GLU VAL VAL GLY LYS LEU ARG ASP SEQRES 22 A 401 LYS LEU GLU GLU ALA LEU LEU LYS ILE PRO ASP VAL MET SEQRES 23 A 401 VAL VAL GLY ASP ARG ILE HIS ARG VAL PRO ASN THR THR SEQRES 24 A 401 LEU VAL SER VAL ARG GLY ILE GLU GLY GLU ALA MET LEU SEQRES 25 A 401 TRP ASP LEU ASN ARG SER ASN ILE ALA ALA SER THR GLY SEQRES 26 A 401 SER ALA CSS ALA SER GLU ASP LEU GLU ALA ASN PRO VAL SEQRES 27 A 401 MET VAL ALA ILE GLY ALA SER LYS GLU LEU ALA HIS THR SEQRES 28 A 401 ALA ILE ARG LEU SER LEU SER ARG PHE ASN THR GLU ALA SEQRES 29 A 401 GLU ILE ASP LYS THR ILE GLU VAL PHE SER GLN ALA ALA SEQRES 30 A 401 VAL ARG LEU ARG ASN ILE SER SER SER TYR VAL ASP LEU SEQRES 31 A 401 VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS MODRES 5WT6 CSS A 328 CYS MODIFIED RESIDUE HET CSS A 328 7 HET IPA A 501 4 HET CL A 502 1 HET PDA A 503 21 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM IPA ISOPROPYL ALCOHOL HETNAM CL CHLORIDE ION HETNAM PDA 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 PDA YLMETHYL)-AMINO]-PROPIONIC ACID HETSYN IPA 2-PROPANOL HETSYN PDA PYRIDOXYL-ALANINE-5-PHOSPHATE FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 IPA C3 H8 O FORMUL 3 CL CL 1- FORMUL 4 PDA C11 H17 N2 O7 P FORMUL 5 HOH *13(H2 O) HELIX 1 AA1 ASP A 16 ARG A 28 1 13 HELIX 2 AA2 HIS A 38 GLU A 43 1 6 HELIX 3 AA3 THR A 44 ASN A 60 1 17 HELIX 4 AA4 CYS A 72 GLU A 88 1 17 HELIX 5 AA5 GLU A 88 GLY A 93 1 6 HELIX 6 AA6 HIS A 104 LEU A 117 1 14 HELIX 7 AA7 ALA A 134 ILE A 141 1 8 HELIX 8 AA8 GLU A 164 LYS A 173 1 10 HELIX 9 AA9 HIS A 205 PHE A 207 5 3 HELIX 10 AB1 ASN A 243 HIS A 260 1 18 HELIX 11 AB2 HIS A 260 VAL A 267 1 8 HELIX 12 AB3 VAL A 267 LEU A 280 1 14 HELIX 13 AB4 GLU A 307 SER A 318 1 12 HELIX 14 AB5 THR A 362 SER A 384 1 23 SHEET 1 AA1 2 ILE A 5 TYR A 6 0 SHEET 2 AA1 2 ILE A 320 ALA A 321 1 O ALA A 321 N ILE A 5 SHEET 1 AA2 7 ASP A 66 THR A 70 0 SHEET 2 AA2 7 GLY A 214 ILE A 218 -1 O ILE A 218 N ASP A 66 SHEET 3 AA2 7 PHE A 199 SER A 203 -1 N PHE A 202 O GLY A 215 SHEET 4 AA2 7 LEU A 176 ASP A 180 1 N THR A 179 O SER A 201 SHEET 5 AA2 7 THR A 145 SER A 149 1 N VAL A 148 O HIS A 178 SHEET 6 AA2 7 HIS A 96 THR A 100 1 N HIS A 96 O ALA A 146 SHEET 7 AA2 7 GLU A 120 LEU A 124 1 O LEU A 124 N THR A 99 SHEET 1 AA3 4 VAL A 285 VAL A 287 0 SHEET 2 AA3 4 THR A 298 VAL A 303 -1 O SER A 302 N MET A 286 SHEET 3 AA3 4 ALA A 352 SER A 356 -1 O ILE A 353 N VAL A 301 SHEET 4 AA3 4 SER A 323 GLY A 325 -1 N SER A 323 O ARG A 354 LINK C ALA A 327 N CSS A 328 1555 1555 1.33 LINK C CSS A 328 N ALA A 329 1555 1555 1.34 SITE 1 AC1 4 TYR A 56 VAL A 67 ILE A 68 ASN A 235 SITE 1 AC2 1 LYS A 82 SITE 1 AC3 15 ASN A 10 CYS A 72 ALA A 73 THR A 74 SITE 2 AC3 15 HIS A 104 ASN A 155 ASP A 180 VAL A 182 SITE 3 AC3 15 GLN A 183 SER A 203 HIS A 205 LYS A 206 SITE 4 AC3 15 GLY A 240 THR A 241 ARG A 354 CRYST1 102.750 102.750 131.970 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009732 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007577 0.00000